slc19a2 (slc19a2)


Basic Information

Item Value
gene id slc19a2
gene name slc19a2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26232829 ~ 26240066 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933478.2
AGAAGAATCAAGATGAACGACTGGTTGCTTTACTTCTATGTCGTCACTTTCCTGCGCCAGGACTATGTCTATATCTTGTCCGAAGCGACGACATGAGAATTCTAAAGCAACTCTAGCTGGAAGGTCGAGCGATATCATCCGCGTTTGGAATGTCTGCGCCATGGCTTTATCCCACAGTCCTGCTGTGTATTTACGGGTTTTTCTCCAGTCTCAGACCGTCAGAGCCTTTCCTCACCGCCTTCCTGATGGGACCTGACAAAAACCTGACTGAGAGAGAGGTTGTGAATGAGATCTATCCAATATGGACATATTCCTACCTGATCttactgtttcctgttttcctgGCTACGGATTACCTCCGTTACAAGCCCGTGCTCATCATCCAGGCAGCCAGCTATGTCATCACTTACGCGATGCTGGTGAAAGCCCAGGGTGTGCTGGCCATGCAGCTTTTGGAGTTCTTCTACGGTGTGGCTACGGCTACTGAGATCGCTTACTACTCCTACATCTACAGCGTAGTCGAGCCTGCTAGTTACCAGAAAGTGACTGGTTTCTGCCGCAGTGTCACTCTGCTGGGATCAGCTGTAGGATCACTCATTGGACAGATACTGGTATCAGTGTCCCATGTTCCACTGGTTAACCTCAGCATCATCACACTGTCCTCATCCTGCTTGGCATTCCTGGCACCATGGTTTTTGCCCATGCCCAGCAAGAGCCTGTTTTTTCACCAGAGTGAGAGTGTTCCTCAGGACAAGACGGCACAGGAGCTCCCTGACAAGTCGGAGGACGGCGAGCACAAAGTGCCACTTGATGCGAATGAAGACACCACGaTTTTCAAGGAGAAACGTGGTGGCACTGGAGGTCTGGTGGAGGTCTTGAAGGCTCTTGGAGCAGATTTTATGAAGTGTTATTCATGCCGCACTCTCCTGGCCTGGTCAGTGTGGTGGGCTCTGTCTACCTGTGGCTACTTCCAAGTAATCAATTACGCCCAGGCCCTGTGGGAGAAGATCCAGTCCTCAAAAGAATTTGATATCTATAATGGTTATGTAGAAACCATATCTACTTTGCTTGggGCCCTTGCTGCTTTCAGTGTAGGATTGGTTAAGGTGCCGTGGGCTGTGTGGGGTGAACTCGCACTCTGCATTTTCTCCATAGTCATTGCTGTGGCTGTGTACGTCATGGACACAGTCAGGAATATCTGGGTGTGCTATGCTTCTTACGTGATCTTCCGAGCCACCTACATGTTGCTCATCACTATAGCAACgtACCAGATTGCAGCCAATCTAAATATGGAGAGATATGCCTTAGTGTTTGGCGTGAACACGTTCGTGGCATTGGTGCTGCAAACGCTGCTTACTGTGATTGTGGTCGACTCTGCTGGGTTGGGCCTTGATATTTTTCCCCAGTTCCTGATCTACGGTAGTTACTTTGCTGCAATCGCGGTGATCTTCCTCATAGCTTGGTTATATAAAGTGGCTACACGCAGTAGTGCTGATGCTGCTGGAGTCCAATCTGAGAGCGCAGAGAATGAAACGGACTCATCTAGTGGAGAAACTCCCATCCCCAAAGAGAGCAGTATTATTTAAGGCATAATCTAAATTTTGAGCATTTTTCATTGAAATTAggttatttattaaagtggaGATGTATTGTAAAAGCACTTATTATAATATGCTGAGTGTGTGCTCAGACCCGGAGCTAGGAGCTTCCATTTAGTTTCCGTTTATCATGGAACAGAAGTTGGAGCTGTGTGTAGTTTTGCAGCAATAACAAAGCaagcacctgtacacctatGGTGAGTagttatacagggtgtcccaaaagtctccatacataagggACTACgtatgccagcaccatgtcggtCGTGAATTCGTCACATGTTCATGGACATCCACTTCTCGGTTCatccacaacacttccagtctttttgaatttgttaataaatttggcagtagtgtcgtgtgtgatgtgcttgccatgtttcctgttaaagtccatcgcaaccttgcaacagctt

Function

symbol description
slc19a2 Predicted to enable thiamine transmembrane transporter activity. Predicted to be involved in thiamine transport and transmembrane transport. Predicted to act upstream of or within vitamin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in diabetes mellitus; megaloblastic anemia; and thiamine-responsive megaloblastic anemia syndrome. Orthologous to human SLC19A2 (solute carrier family 19 member 2).

NR:

description
PREDICTED: thiamine transporter 1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K14610 SLC19A2_3, THTR; solute carrier family 19 (thiamine transporter), member 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933478.2 True 2020 mRNA 0.47 6 26232829 26240066

Neighbor

gene id symbol gene type direction distance location
psmb3 psmb3,LOC102792592,LOC107688824 coding upstream 2913 26222530 ~ 26229916 (+)
LOC113538326 unc80,LOC107688825 coding upstream 21649 26141682 ~ 26211180 (+)
nomo nomo,LOC108273232,LOC108438153,LOC107677623,LOC107562229,LOC107709581 coding upstream 93051 26114808 ~ 26139778 (+)
LOC113538206 tgds coding upstream 157062 26068906 ~ 26075767 (+)
sox21a sox21 coding upstream 172462 26057042 ~ 26060367 (+)
faimb LOC108273096,LOC108437684,LOC103044688 coding downstream 22759 26262825 ~ 26264287 (+)
ackr3b ackr3 coding downstream 244584 26484650 ~ 26489299 (+)
trim63a NA coding downstream 290837 26530903 ~ 26532518 (+)
mlpha mlph coding downstream 300381 26540447 ~ 26553487 (+)
lrrfip1b lrrfip1,lrrfip1b,LOC107688829,LOC107596315,LOC107677622,LOC107738309 coding downstream 316950 26557016 ~ 26606730 (+)
LOC117595850 NA non-coding upstream 17396 26214465 ~ 26215433 (+)
G33340 NA non-coding upstream 99132 26090617 ~ 26133697 (+)
G33352 NA non-coding upstream 190529 26041835 ~ 26042300 (+)
G33332 NA non-coding upstream 260439 25957913 ~ 25972390 (+)
G33331 NA non-coding upstream 276582 25954869 ~ 25956247 (+)
G33383 NA non-coding downstream 3876 26243942 ~ 26298782 (+)
G33395 NA non-coding downstream 58930 26298996 ~ 26304744 (+)
G33397 NA non-coding downstream 72949 26313015 ~ 26317787 (+)
G33410 NA non-coding downstream 171190 26411256 ~ 26411456 (+)
G33440 NA non-coding downstream 317822 26557888 ~ 26558405 (+)
trak2 LOC108271640 other upstream 447939 25756814 ~ 25784890 (+)
LOC117598985 NA other upstream 1576581 24652990 ~ 24656248 (+)
G32684 NA other upstream 2211793 24020378 ~ 24021036 (+)
uhmk1 uhmk1,LOC107692420 other upstream 2579274 23633606 ~ 23653555 (+)
tmem69 tmem69 other upstream 3629393 22597595 ~ 22603436 (+)
agap1 agap1,LOC108272907,LOC103044997,LOC107586321,LOC107688827,LOC107709574 other downstream 25431 26265497 ~ 26408396 (+)
st6gal2b LOC108273345,LOC108272416,LOC107559918,LOC108437696,LOC107748583,LOC107688887,LOC103032506 other downstream 373584 26613650 ~ 26649387 (+)
adam23a adam23,LOC107705602,LOC107748557,LOC107688856,LOC107660086 other downstream 1529730 27769796 ~ 27787602 (+)
ten1 ten1 other downstream 1738731 27978797 ~ 27983171 (+)
ldlrb LOC108273208 other downstream 2881376 29121442 ~ 29176269 (+)

Expression


Co-expression Network