LOC113538427 (tmem125,LOC108440199)


Basic Information

Item Value
gene id LOC113538427
gene name tmem125,LOC108440199
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23168378 ~ 23178559 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933489.2
agagagagagagagagagagagagagagaaggaataTCACCTGCCATGCTGTTCGctcagagagagtgagtgagtgtgagagagagagagagagagagagagagagagggaatatcACCTGCCATGCTGTTcgctcagagagagagtgagtgagagagagagagagagagagagagagagagagagagagggaatatcACCTGCCATGCTGTTCGCTCagagagaggagtgagtgagagagagagagagagagagagagagagggaatatcACCTGCCATGCTGTTCGctcagagagagtgagtgagagagagagagagagtgagtgagagagagagagagagagagagagagagagagggaatatcACCTGCCATGCTGTTCGctcagagagagtgagtgagagagagagagagagagagagaaagagagaatatcACCTGCCATGCTGTTCGctcagagagagtgagtgagtgagtgagagagagagagagggaatatcACCTGCCATGCTGTTCGCTCAGACAGAGAGCCAGGGCTGATTTCAGTGCGTCGCCGCAGAGAGAAGTTGCTGCTGTTCCTCCTCAGGTCTGTCCTGTTTTGAAGGCATGGAGGTGTGGATGTGTAGAGAAGGAGACGCCGGGCTGAAGAGGCATTGTGGGATTGAGGAGCAGAAATGGACGCTTCCGCTTTATCACAGgacaGTGAGAAGTTAACCTCTTCCAGGCCTAGACAAAGACACAGAGTCTCACTTCACGGTCTGTGTCTTGCAGTCAGCCTGGGGAGAAACAAGGCATCGGCTGTTGCACACTGACCAAAGTCAAGAAAAAAGTGTGCTTTGTGAATGCTTCCTATTCAGACACATCTCCCACAGCCCTACAGAGCCTGACACCAAAGGATACTGCTTCACTCTGGATCAGACTGTGAACCCAGACGGCCTTGATGTTTGGCAGGAATCAACCCGGAAGGGTGGAGCTCTATTTGCTTTTTTCAAAGATTTATATTAACTGTTCACAAAACCAAGAGGATATTTAATCAAGGTGGAAAGCACAGGTGTTGCTCTCTGCCCCATTCCTGACATCTGTGGCTTTCCAATCTCttcactaaaaaaaacatgtcgGAGCTAGACGacttccctcctcctcctcgagGTGCCCACCAAGCCGATCCCTCCCGTATTCAGCAGGACATCCTGGAGGAGCAGGTGGAGCTGTGGTGGTTCAGCGAGCCACGGAAGTCTCTGCTGTGTTACAGCGCCTCTGTGGCCTTGGTGGTGGGCTGCGGGGTGGGTGGCGTCGGCCTGCTGTCCAGCACCACCAGCCTGTCGAGCGAGTGGCGTCTGGGTGCGGGCACGGCACTGTGCATGCTGGCGTTAGCCGTGGTGCTCAAGCAGCTGCTCAGCTCAGCCGTGCAGGACATGAACTGCGTGCGCACCCGGCAGCGCATAGACGTTCTGAAAAGCGGAGGCTTGTCTGACGTGCTGGTCGTGCTCCTCACTGGACTTTCCTTGCTCATCTGCGGAGCTGTGCTGCTCAGTGTGGCTCTGGGATACCACATGCCCAAACCGGGCCAGGCGCTCAATGATATGTTTATATCAGGAGTGGTGTTGTTGGCAGGTGGAGGGTTCACGGTGGTGGCTGTCACCATTTACTCGGTTGTGGTTTTCCTCTTGGCGAGGATAAGACCTGAGCGGAGCTTGAGAGACAGAATGCTTGGAATTTTCACTGTATCGGGGCAGATGCGTGCTCGGCGGGAGACAGCGTCAAGCCTGGCACAACTCATATGACTGTGGAattctatatattatatatatacggCTTGGACAAAAAGACAGAATCTATACAGAAATTGGgctgttaaatgttttattttcctcagaAACTACACTCCAGAAGAGGTGATCAATAAAGAAGCACAGCCACTAGCGAACATTTTGCACAGATTGATTGATGAATGTATAAAACTACAGCAATGATGGTacaaaacacatactgtattatctttcttttattatgtatatatgtactggTCTCACTGTGCTCTGAAAACATGGGTAAGACCACATTTATGGGCCTTACTCCCAAACCCAAAGCCTTTTATCGTTATGCACCATCAAGTTTTACACAGACcaatgaaataatgaattattttttagatAAAACATGTTGGCTTCTCACAGCACAACCGTCGCCTTCCAAACATGTTAATGAGCTTCACCAAACATCAATTCACCATCTGTGGGGAATTGACTGTGTGTCCTTCACACGTTTATTTATGTGGGCGAAGAGGCGTGTCCCAAATGGAGATCCATCTGGACCTTGCTTGTCAGAGCTGTTTAATGTGTGTTAGAACGTATCAGCCGTGTCAGTTTGCATGTTTGTGATTTTATACCGTGACCTCTCTCTGGCTCGGCGAGAGCAGTACACACTGTCGATCAAATAAAACCAGCTCTCCACTCATAAAGAGAGTGAAGACACTGATTGTATCtgattgtattttaaattacagctgtttattattatcattctgCACTTCCATCGACAAGTCATTTAATATACCATAAGCACATTTATAACCCTAAAAGTAAAACTTTATTGCATAAAGTAACTCTTGATTAATCTGGAGGGCTGATTAAAGAGTGTTCAGAATTtagattgtgtgtatgtgcaaaaaaaaaaaatcgttttCTAAATCAAAATGTAATATGCCATTGCATTATGAGAATGTCATTACATCATATGGCTTAATTTAGAGGGATCGAGTGTGAACTGAAATTTACcaacatattttatttgaaaaaacaaataaattatagtTAAATATGAAGAATTCTCAAGAATTACTCATGTTCAATGTTAGtatcattattaatatgatATACAGTGTTGAATGTTTAgggattattaaaataaattcattttaattgtttcaataaaaaaaatccttgtttTCTCtagaaatgttttgttatttttaaaatgcatggatgattattataaatgtacGTGTAAGGCTGGCTGTATTGGAATCTGCTCACAAgtccatgttttaaaaaatgaaaaacaaacaaacaaacaaacaaataaataaataaataaaatatatgttggTGGAAGTAAAAAAGTGAAACAACATATATGACATTTCTCtcaaattgaatacttgtacaTGAAGTATAAAATACTCACCGTCCACTccaacaggaacacctgtacacctgttcatgcatttatctaatcattcaatcatgtggcagcagcacaacgcaTACACTCATGCAGatagagcttcagttaatgttcacatcaaacatcagaatggggaacaTTGTGATCTCTGTGTAAACTAGAGACTGTCTTGTGTGAAACTCCCAgtagatcaacagtttctgaaatactcaaaccagcccatctggcaccaaaatccatgccacagttaaagtcagcgatcacacatt

Function

symbol description
tmem125 Predicted to be integral component of membrane.

NR:

description
PREDICTED: transmembrane protein 125

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933489.2 True 3456 mRNA 0.44 3 23168378 23178559

Neighbor

gene id symbol gene type direction distance location
tie1 tie1,LOC107731644,LOC107684058 coding downstream 52099 23098953 ~ 23116279 (-)
mpl mpl coding downstream 72992 23086607 ~ 23095386 (-)
prpf38a prpf38a,LOC107731643,LOC107684051 coding downstream 96849 23063527 ~ 23071529 (-)
pomgnt1 pomgnt1 coding downstream 106297 23048586 ~ 23062081 (-)
pik3r3b pik3r3,pik3r3b,LOC107717145,LOC107692397,LOC107594617,LOC107675943,LOC106584012 coding downstream 203523 22773126 ~ 22964855 (-)
fam183a fam183a coding upstream 12329 23190888 ~ 23193503 (-)
mier1a LOC108272166 coding upstream 288822 23467381 ~ 23477206 (-)
slc35d1a slc35d1,slc35d1a,LOC108272060,LOC108441641,LOC107724140,LOC107684099,LOC107758361 coding upstream 301464 23480023 ~ 23495491 (-)
LOC113538489 LOC108271594 coding upstream 318097 23496656 ~ 23503444 (-)
serbp1a serbp1,LOC108271890,LOC107594603,LOC107692416,LOC107758366 coding upstream 375691 23554250 ~ 23560790 (-)
G32244 NA non-coding downstream 125616 23042531 ~ 23042762 (-)
LOC113538262 NA non-coding downstream 173189 22990447 ~ 22995189 (-)
G32157 NA non-coding downstream 382688 22711213 ~ 22785690 (-)
G31934 NA non-coding downstream 599542 22565292 ~ 22568836 (-)
G31916 NA non-coding downstream 607770 22538323 ~ 22560608 (-)
G32629 NA non-coding upstream 500223 23678782 ~ 23683686 (-)
G32686 NA non-coding upstream 841566 24020125 ~ 24020779 (-)
G32777 NA non-coding upstream 1039934 24218493 ~ 24218937 (-)
G32781 NA non-coding upstream 1080747 24259306 ~ 24259855 (-)
G32840 NA non-coding upstream 1304104 24482663 ~ 24482990 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 574517 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 586435 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 1636950 21449546 ~ 21531428 (-)
lepr lepr other downstream 1850555 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 2739053 20359722 ~ 20429325 (-)
dmrt2b LOC108271504 other upstream 43734 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 436895 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 2501531 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 2722171 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 2902590 26081149 ~ 26105675 (-)

Expression


Co-expression Network