rbm26 (rbm26,LOC107672672,LOC107690205,LOC107746592)


Basic Information

Item Value
gene id rbm26
gene name rbm26,LOC107672672,LOC107690205,LOC107746592
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 25662000 ~ 25674496 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933607.2
TTTCACAACGTGAGTAAACAGTCGCCATTTGTAGAAACTggggaaagagaggaaaaactgAGGAAAGTATTGGGAATATTTTCTAGACGTTTCCTCGCAAAATTGTCAGATCTAATTTCTGATCAGAGGCAAATGTAATTCTGAATTATCCTGCTGTGTCCACCTGCCCTGCTGTTAAAATCACATGTTTGGAGTAATCAGTGAAAACTGTACGTAGTTTGGGGGCCGGGTAGCTTTAGTGTTAGCTTTAGTATTAGCATCCCTGGGCCTGGTGTGTTGTTAGCTTAGCACTTTTTCACCTCCAGCACTTTAGCTGAGctgtttgggtttttctttttgttttattattatttttttctcaaaaatgaTCATTGAAAACCTCGATGCCTTGAAGACGTGGCTCTCCAAAACCCTCGAACCAATATGTGATGCTGACCCGTCTGCGCTTGCTAAATACGTGGTGGCCTTGGTGAAGAAGGACAAGTCGGAGAAGGAGCTGAGAGCGCTATGCATAGACCAGTTGGATGTATTCCTCCAGAAGGaGACTCAGACATTTGTGGATAAACTTTTTGAAGCTGTGAACACGAAGAGCTACCTACCTCAGGCTGAGATGCTGAGCTCCACAGGCAGGACCGAGAGCCACACACGCTCCGACAAAGACGAGCAGAAGaaagaggagCAGCTGAGTCGGGATGATGAACGAGAGAAGAAGTTCTCCAGGAGAGTGAACCACAGCCCACAGTCCAGCTCACGTTACAGCCGAGACAGCAGGAGGAGTGATGAGCGCAAGAAAGATGATCGGTCCAGAAAGCGAGAGTACGAGCGTCCTCCGCCCAGACGTGACTCGTACCGTGAACGCTACAACCGGCgcagggggcggagctacagCCGGAGCCGGAGTCGCAGCTGGAGCAAAGACAGAGTGCGTGACCGCGACCGTGAAAGAGAGCGTGAGCGAGACcgagagcgcgagagagagcgGGAGCGCAGCAGGACACGCTCTCGCAGCCGCTCCAGGTCTAGGAGTCGAGagagGGAGCCTGGAAAACCAAAGTATGACCATGAGCGGCCAGAGGGCGGAGCCACTGAGGCCTATGTACCCCCACCCCTCGCCTCTGCTCCTAGCTCCTCCCATTTCCCTGTACCCGCCCTCAGCAGCACCATCACTGTCATCGCTCCCActcaccatggcaacagcacCACGGAGAGCTGGTCTGAATTCCACCAAGACCATGGCCCGTATGGCAGAGTGGCTCCGCCCCCTTCACGCAAGCGCTGTCGTGACTATGACGAGAAAGGTTTCTGTATGCGAGGTGATATGTGTCCATTCGACCATGGCAGTGATCCGGTGGTGGTAGAGGATGTCAACCTTCCTAGCATCCTCCCCTTCCCGCCTGCGCCGCTTCCTGTCGGGGATGGTCCGCCCCCTCCTGGTCTGCCGCCGCCTCCCGGTCTACTCCCCCCTCCACCGGTTAACCTCCGGCCCCCTGTGGCACCAGGCAGCCTCCCACCTGTCGCAGGTCCTCCTCCGCCTCTCCCAGCACTGGATGCTCCTCCAAACTCCATGACCAGCTCTGTCCCCTCCATCGTCTCCACGTCTCGTCCTCTACTCCCTCAGCCTCCGCTTCACCTGGTCACTTCAGGCATCCGACCCCCACTCACACAGCCACCGCCGCCCCTCTTCACCTCGGATTCGTTTGAACCGGACGTGTATAACCCCGAAGCTCCTAGTCTAAACTCTCGCCCTGCGTATAGACCCCGGGTCAACGTGCAGAGACCGAACCTCATTGGCCTCACTATGGGAGAAGTGGATCTTCCTCCACGAGATAAAATGTTGAACAGCAATACTGCACGGATCGTTTTGGAATCAGACTCCAGGAAGCGAGGGGTGGGGCATCATGATGGCGGCCCTCCTTCTAAAAAACCTTGGTTTGATAAgtcAAACTTCAACAAGCCCAACCATCATGGCTACCATAAGAAAGTGCCGCTGCCTCTGCCGAACACTAAGCTGGCCATCCGGCAAATACCACCTGACCTGAACAACATCAGCAAACTCAACGAGCACTTCAGCAAATTTGGGAAAATTGTCAACCTGCAGgttgcCTATAACAATGACCCTGAGAGTGCTCTGATCCAGTTCGAGTCTCCAGAGGAAGCAAAGCGCGCTATGCAGAGCACTGAGGCTGTCCTCAACAACCGATTCATCAAAGTGCACTGGCACAGAGATGACGGGCCGCctggcacacaaacacacaccccgcTCAAcgtgAGTGTGCAGCAGCCTGAAGCCACCAGTCTGAAGCAGTCGGTGAAAGATCGTCTCGGTCCTCTGCCCTCTAACAGCACAGAGCCACTGCAGGATGCCACGCCTCCATCACAGtcTTCACAGAGCGCCGCCCGGTCGTCGGTGAAGGAGCGGCTGGGTTTCTCTAAACCAGCGCCGGCTGAAGGAAAGGTCTTCTCCACCTCCACTGGACTCACGAAGACGTTTTATAACCCGGCTGCGCTGAAGCCAGGCCAAAAGGGTGTGATGACGGGGACAGCTGCCAGCTCTGAGGATGCACTGAAGAAGAAGCAGGAGGCGCTAAAACTTCAGCAagatgtgaggaagaaaaagCAGGAGATTCTGGAGAAGCACATTGAGACTCAGAAActgctgaTTTCTAAGCTAGAGAAGAACAAGTCAATGAAAGCGGAGGATAAAGCTCAGCTGATGCAGACGCTGAACACTCTGACAAACAGCATCAGCAAACTGCAGGAGGAGATCAAGGGCCTGTCcagcccacacacactgcatagtGGCATCAAAACCAAGGCCCAGgctcAGAAGGAGCTGTTGGACACTGAACTCGATCTGTACAAGAAGACACAAGCTGGAGAAGACACAGCTCAGCTCAAACTCCGATACACACAGCTGCAGCTCGAGGCAGCTAAGCGGGGCATTCTGACCCCAGGGCGAGGGAGGGGGGCCCATGCCCGGGGTCGGGGATCAGCACGGGGACGTGGACGGGGCATTAGGGGCAGACCGAGGGGGGTTCCTACCCACTCCGTGGTAGATCATCGACCCCGCGCTCTGGAGATCAGCGGCTTCACTGAGGCTGATCGAGTGGATCTGCTGCCACATTTTGCTCAATTTGGGGAGATTGAGGACTGTCAGATGGAGGACTCCAGTCTCAGTGCTGTCATCACCTTCAGAACCCGAACAGAGGCagaacagGCTGCTGTTCATGGCGTGAGGTTTAACAATCAGGATCTGCGTCTGTCCTGGTACAAACCAGCCGTCCCTCTCAGCGCAGCTGACACTGACGAGGCAGAGCCTGAGGAAGAGGAGTTCCAGGAGGACACTCTGGTGGACGACGCGCTGCTGCAGGATGACGATGAGGAAGAAGACGATAATGAGTCACGCTCCTGGCGCAGATGAAGATGTCTCTTGGCCTAGCCCCACCTCCATCGTCACAtcacttccttttttcatttcattttttgtcatatggttgtttttaattaaaaggcAGTTTGCCATGAGTATGCCATTCATGTTTTATGTATTAGCAGTAACACTGAACTGATGTCTCTCTCAGCACAGTTcagattttttctttcacagtgtaaaaaatgtcattgaattACCTTTCATTGAATCTAGTCTATTATGAGAAGCCAcgtttaatttgtaaaaatcgGGATACGATAACTAACTTTTAATTTCAAAGAGCATGTTGGGTCACATGTAGTATGACTTAATTTAGCACATTTAGCCTTTTGagctagtttgtgtttgtgtacatattttatGTATGAGTTTTAATGATTTGTATGACTGCTTTGCTTCTCCCGGCTTACTctgaaatgtcaaaaaaataaagaattgaaatggtctagaaaaaaaatcagctgaaaaaaagaagaaaaaaaaaaaaa
>XM_026933608.2
ATTTCACAACGTGAGTAAACAGTCGCCATTTGTAGAAACTggggaaagagaggaaaaactgAGGAAAGTATTGGGAATATTTTCTAGACGTTTCCTCGCAAAATTGTCAGATCTAATTTCTGATCAGAGGCAAATGTAATTCTGAATTATCCTGCTGTGTCCACCTGCCCTGCTGTTAAAATCACATGTTTGGAGTAATCAGTGAAAACTGTACGTAGTTTGGGGGCCGGGTAGCTTTAGTGTTAGCTTTAGTATTAGCATCCCTGGGCCTGGTGTGTTGTTAGCTTAGCACTTTTTCACCTCCAGCACTTTAGCTGAGctgtttgggtttttctttttgttttattattatttttttctcaaaaatgaTCATTGAAAACCTCGATGCCTTGAAGACGTGGCTCTCCAAAACCCTCGAACCAATATGTGATGCTGACCCGTCTGCGCTTGCTAAATACGTGGTGGCCTTGGTGAAGAAGGACAAGTCGGAGAAGGAGCTGAGAGCGCTATGCATAGACCAGTTGGATGTATTCCTCCAGAAGGaGACTCAGACATTTGTGGATAAACTTTTTGAAGCTGTGAACACGAAGAGCTACCTACCTCAGGCTGAGATGCTGAGCTCCACAGGCAGGACCGAGAGCCACACACGCTCCGACAAAGACGAGCAGAAGaaagaggagCTGAGTCGGGATGATGAACGAGAGAAGAAGTTCTCCAGGAGAGTGAACCACAGCCCACAGTCCAGCTCACGTTACAGCCGAGACAGCAGGAGGAGTGATGAGCGCAAGAAAGATGATCGGTCCAGAAAGCGAGAGTACGAGCGTCCTCCGCCCAGACGTGACTCGTACCGTGAACGCTACAACCGGCgcagggggcggagctacagCCGGAGCCGGAGTCGCAGCTGGAGCAAAGACAGAGTGCGTGACCGCGACCGTGAAAGAGAGCGTGAGCGAGACcgagagcgcgagagagagcgGGAGCGCAGCAGGACACGCTCTCGCAGCCGCTCCAGGTCTAGGAGTCGAGagagGGAGCCTGGAAAACCAAAGTATGACCATGAGCGGCCAGAGGGCGGAGCCACTGAGGCCTATGTACCCCCACCCCTCGCCTCTGCTCCTAGCTCCTCCCATTTCCCTGTACCCGCCCTCAGCAGCACCATCACTGTCATCGCTCCCActcaccatggcaacagcacCACGGAGAGCTGGTCTGAATTCCACCAAGACCATGGCCCGTATGGCAGAGTGGCTCCGCCCCCTTCACGCAAGCGCTGTCGTGACTATGACGAGAAAGGTTTCTGTATGCGAGGTGATATGTGTCCATTCGACCATGGCAGTGATCCGGTGGTGGTAGAGGATGTCAACCTTCCTAGCATCCTCCCCTTCCCGCCTGCGCCGCTTCCTGTCGGGGATGGTCCGCCCCCTCCTGGTCTGCCGCCGCCTCCCGGTCTACTCCCCCCTCCACCGGTTAACCTCCGGCCCCCTGTGGCACCAGGCAGCCTCCCACCTGTCGCAGGTCCTCCTCCGCCTCTCCCAGCACTGGATGCTCCTCCAAACTCCATGACCAGCTCTGTCCCCTCCATCGTCTCCACGTCTCGTCCTCTACTCCCTCAGCCTCCGCTTCACCTGGTCACTTCAGGCATCCGACCCCCACTCACACAGCCACCGCCGCCCCTCTTCACCTCGGATTCGTTTGAACCGGACGTGTATAACCCCGAAGCTCCTAGTCTAAACTCTCGCCCTGCGTATAGACCCCGGGTCAACGTGCAGAGACCGAACCTCATTGGCCTCACTATGGGAGAAGTGGATCTTCCTCCACGAGATAAAATGTTGAACAGCAATACTGCACGGATCGTTTTGGAATCAGACTCCAGGAAGCGAGGGGTGGGGCATCATGATGGCGGCCCTCCTTCTAAAAAACCTTGGTTTGATAAgtcAAACTTCAACAAGCCCAACCATCATGGCTACCATAAGAAAGTGCCGCTGCCTCTGCCGAACACTAAGCTGGCCATCCGGCAAATACCACCTGACCTGAACAACATCAGCAAACTCAACGAGCACTTCAGCAAATTTGGGAAAATTGTCAACCTGCAGgttgcCTATAACAATGACCCTGAGAGTGCTCTGATCCAGTTCGAGTCTCCAGAGGAAGCAAAGCGCGCTATGCAGAGCACTGAGGCTGTCCTCAACAACCGATTCATCAAAGTGCACTGGCACAGAGATGACGGGCCGCctggcacacaaacacacaccccgcTCAAcgtgAGTGTGCAGCAGCCTGAAGCCACCAGTCTGAAGCAGTCGGTGAAAGATCGTCTCGGTCCTCTGCCCTCTAACAGCACAGAGCCACTGCAGGATGCCACGCCTCCATCACAGtcTTCACAGAGCGCCGCCCGGTCGTCGGTGAAGGAGCGGCTGGGTTTCTCTAAACCAGCGCCGGCTGAAGGAAAGGTCTTCTCCACCTCCACTGGACTCACGAAGACGTTTTATAACCCGGCTGCGCTGAAGCCAGGCCAAAAGGGTGTGATGACGGGGACAGCTGCCAGCTCTGAGGATGCACTGAAGAAGAAGCAGGAGGCGCTAAAACTTCAGCAagatgtgaggaagaaaaagCAGGAGATTCTGGAGAAGCACATTGAGACTCAGAAActgctgaTTTCTAAGCTAGAGAAGAACAAGTCAATGAAAGCGGAGGATAAAGCTCAGCTGATGCAGACGCTGAACACTCTGACAAACAGCATCAGCAAACTGCAGGAGGAGATCAAGGGCCTGTCcagcccacacacactgcatagtGGCATCAAAACCAAGGCCCAGgctcAGAAGGAGCTGTTGGACACTGAACTCGATCTGTACAAGAAGACACAAGCTGGAGAAGACACAGCTCAGCTCAAACTCCGATACACACAGCTGCAGCTCGAGGCAGCTAAGCGGGGCATTCTGACCCCAGGGCGAGGGAGGGGGGCCCATGCCCGGGGTCGGGGATCAGCACGGGGACGTGGACGGGGCATTAGGGGCAGACCGAGGGGGGTTCCTACCCACTCCGTGGTAGATCATCGACCCCGCGCTCTGGAGATCAGCGGCTTCACTGAGGCTGATCGAGTGGATCTGCTGCCACATTTTGCTCAATTTGGGGAGATTGAGGACTGTCAGATGGAGGACTCCAGTCTCAGTGCTGTCATCACCTTCAGAACCCGAACAGAGGCagaacagGCTGCTGTTCATGGCGTGAGGTTTAACAATCAGGATCTGCGTCTGTCCTGGTACAAACCAGCCGTCCCTCTCAGCGCAGCTGACACTGACGAGGCAGAGCCTGAGGAAGAGGAGTTCCAGGAGGACACTCTGGTGGACGACGCGCTGCTGCAGGATGACGATGAGGAAGAAGACGATAATGAGTCACGCTCCTGGCGCAGATGAAGATGTCTCTTGGCCTAGCCCCACCTCCATCGTCACAtcacttccttttttcatttcattttttgtcatatggttgtttttaattaaaaggcAGTTTGCCATGAGTATGCCATTCATGTTTTATGTATTAGCAGTAACACTGAACTGATGTCTCTCTCAGCACAGTTcagattttttctttcacagtgtaaaaaatgtcattgaattACCTTTCATTGAATCTAGTCTATTATGAGAAGCCAcgtttaatttgtaaaaatcgGGATACGATAACTAACTTTTAATTTCAAAGAGCATGTTGGGTCACATGTAGTATGACTTAATTTAGCACATTTAGCCTTTTGagctagtttgtgtttgtgtacatattttatGTATGAGTTTTAATGATTTGTATGACTGCTTTGCTTCTCCCGGCTTACTctgaaatgtcaaaaaaataaagaattgaaatggtctagaaaaaaaatcagctgaaaaaaagaagaaaaaaaaaaaaa

Function

symbol description
rbm26 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human RBM26 (RNA binding motif protein 26).

NR:

description
PREDICTED: RNA-binding protein 26 isoform X2

GO: NA

KEGG:

id description
K13192 RBM26; RNA-binding protein 26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933607.2 True 3921 mRNA 0.52 22 25662000 25674495
XM_026933608.2 False 3919 mRNA 0.52 22 25662000 25674496

Neighbor

gene id symbol gene type direction distance location
obi1 rnf219 coding downstream 81458 25570021 ~ 25580542 (-)
pou4f1 pou4f1,LOC103143517,LOC107672640,LOC107709069 coding downstream 97911 25560790 ~ 25564089 (-)
LOC113538330 pcdh9,LOC107582331 coding downstream 491740 24968550 ~ 25170260 (-)
brinp3a.2 brinp3a.2,LOC108440126,LOC107711116,LOC108271609,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 1280507 24330165 ~ 24381493 (-)
brinp3a.1 brinp3a.1,LOC108271581,LOC108441513,LOC107585174,LOC107711117,LOC107732447 coding downstream 1531974 24077383 ~ 24130026 (-)
stradb stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750 coding upstream 70887 25745383 ~ 25755348 (-)
trim25l LOC108271643 coding upstream 120730 25795226 ~ 25813178 (-)
LOC113538391 NA coding upstream 137390 25811886 ~ 25817786 (-)
gpr180 gpr180 coding upstream 385959 26060455 ~ 26068892 (-)
si:ch73-193c12.2 LOC108273213 coding upstream 538257 26212753 ~ 26218578 (-)
LOC117599130 NA non-coding downstream 36 25658315 ~ 25661964 (-)
G33166 NA non-coding downstream 230032 25431758 ~ 25431968 (-)
LOC113538494 NA non-coding downstream 421647 25206722 ~ 25240353 (-)
G32923 NA non-coding downstream 837566 24824235 ~ 24824434 (-)
LOC117599074 NA non-coding downstream 862575 24794547 ~ 24799425 (-)
G33508 NA non-coding upstream 35735 25710231 ~ 25784880 (-)
G33538 fbxl3a,fbxl3,LOC108273248,LOC108436444,LOC107664003,LOC107670904 non-coding upstream 162802 25837298 ~ 25843332 (-)
G33621 NA non-coding upstream 402879 26077375 ~ 26077901 (-)
G33617 NA non-coding upstream 414882 26089378 ~ 26109660 (-)
G33645 psmb3,LOC107586359,LOC107688824,LOC102792592 non-coding upstream 547967 26222463 ~ 26227188 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 2029987 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 2436452 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 3068139 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 3080057 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 4130572 21449546 ~ 21531428 (-)
nbeal1 nbeal1 other upstream 5594 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 226234 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 406653 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 956333 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 965337 26639833 ~ 26649379 (-)

Expression


Co-expression Network