stradb (stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750)


Basic Information

Item Value
gene id stradb
gene name stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 25745383 ~ 25755348 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933620.2
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaggacacacacagaagctGCCTTGATGTTCTAATAGAGGAGTCCGGATTTGAACATCATAATCTAGATAATCCTTCAAACCAGACCACGcacgCTCATTAAGTCTGTTTATGTTGCCGGCGAGCGGTTGATGTTTAAAGCGTATCATAGAGGCAGTGTGAGAAACTGATGAATGCACTGCAGCACAGCGGGACTGCCATCAAACGCACCTCATGTCGTTCTTGGACTGCTCCTGTATCTCCGCCCACTCTCAGGTCCAGCCAATCAGCTGTGAGGATCAGTATGAGGACATCAGTGGGTCGTACCTGaGCAGTGATGGCTCGTTCTTCGGAGCTGATGATGATCTCTCCGGCTTGTCCGCTGATCCTGCAGACTATCAGTTGCTCTCAGTACTCggacggGGCTTTAATAACCTGAGCCAGGTGAGTATGGCCCGTCACAGACCGTCTGGTCGACTGGTGTGCGTGAAAAACACCAATCTGGATGAGTGTACGGAGGAGGAGCTGCTGCAGCTTATGaatGAGGCGCTGTTGTCCAGATTGTTTCGTCACCCAAACCTGCTGACGTCCAGGTTGGTGTTCAGTTCCTGCTGCCAGCTGTGGGTGCTCTCTCCACTAATGAGCTacggTTCTGCAGACTCGTTACTCAGGTCATTTTTCCCAGATGGAATGAGTGAATCTCTGGTTGCGTATCTGCTTTATGGAGTCCTGAATGCTCTGAAGTACCTGCACCACATGGGCTACATACACAGAGGTGTGAAGGCGAGTCACGTGCTGCTGTCGGCAGGAGGACATGTGTGTCTTTCTGgcctgcagtgtgtgtacagcCTCATGAGAGATGGGAGGAGGATGGAGGTCGTGTTCGATATGCCAcaacacacaccctcactgctGCCCTGGCTCAGCCCCGAGCTCCTGAGACagGATCTCCATGGTTACGGAGTGAAGTCTGATATCTACAGTGTGGGTGTGTTGGCATTGGAGCTGGTCAGTGGAAGAGTTCCGTTCCAGGACCTGCCCCCCACCCTGatgttgcTGCAGAAGCTGCGTGGTTCTCTGAGCTGCATGCTCGACGGCGCCCCCTACGCTCTGGGAGATTTCAGTGCTCTGAAGGTGTCTCGCTCCGGAGTGGACTCGGGGATCGGTGAGAGCGTGGCTGCAGGAAGTCTAACTCGGACCGCCACGGCAGAGAGACCACAAAGCCCCACCCCCAAAAACCACTCCGCTACCTTACACAACCTGCTACAGCTCTGCCTACAACAGCAACCTGAACGCAGACCATCAGCATCAGCTCTCCTCACTCATCCCTTCTTTAAACAGgtgaAGAAACACACCCCGGACTCGTTCCTCAGTCTAGTGTACCCAGCCATTCCTCTCTCCTGCCCCGTGGACGTTCCCCTGTCTCCGCCGCTGctccacactgacacacacacccacacgagCCCTGAGCCTGCGGATGGAGGAGTGTGGGATTTCTCCtaatacacactctatacactctttACACACTCTTTTAGCTTGACAGCTGTTTGTCACAGTATTACACAgtatctctctatctttctctgtcATATCTCAAACTGGAGATCAGTTCACACCTTTCCCCTACACACACTTCGTTTGCGATCCTCTATTCTGGCTGATTCTGTAGTTGTTGTTATAGAGCTACAGTGAAAATCTTCACGTTATCATCCGATCTTTGTTCCATTGTGTTCAGAAATCATGCCGAGAGTGACAGGAAACATTTCCTGTCCAATACAGACCTTAACGAGCTGAAAATTCCCATAAGCGATATTACTGGCTGTTTAAAAGTTAGATAACAGTGACTGATGTGATAACAACAGAAATAGCAACACTTAGAGATATGAGAAGTCTTGTACGAGAAGAATTGGAAAAGTACCACGTAAGTTGTGTTACATATTTTTCCAACATGGATGTTATATCTCTTTCTGCCCTAAGACCTTAGTTTAACTACAGTTAAAAGGCTTGACCTTACGAtattttcagttattatttgTCACTTTTgatattaaaatcatattaaaatattttctctttttaaaaagtatatgcTACACTAAAGCCTTTAAactagtaaaataaataatatttgtttaaattaatacCTGCATAaacacagcagtaaacaaaaaaagtttaaaaaaaggaaaagagtgagaaactaatgataatactaataattttatttttttaatcaccatTAAGCCATGCTgtgatttactgtatatttccaTCCTTTTATAGTACCGGAGCTCAGCTCCTCCTGTGCTCCTGCCTTATTTAACCCCTTAAGGTTCCACTTTCATTAAGACATCATGAGGTCACGAGGTCAGATTTTTTGTTTGGTATTTCCTCGTGTTCATGAATACAGTTTTATTCTCAAACATTTATAGATGCATTATTAAACCTCAGTGATTTCAGACACACCACTGTAGTTGTGAAACCGATATACTGAGCCTCCAACGCTGGGAAAAAGAAGTGTGCGTGACTgtagaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatgcactATGAACGACCTCTCCAAAACCtcggattttttttcccagtgcaGAAACCTGAACCTCGTGTTAACAGAACCTGTGAAGAAACACAAAGTCACTTCCATACTGTTGAAGAACTAAAGACTGTGATTGACTCCTTATGGACTAAagtcatgtttatgtttttttaatgctgtcaTGTAAACTGAGTCATTGTAATGGGTTATAAATATATTCTTACCCAGTTTCTTAA

Function

symbol description
stradb Predicted to enable ATP binding activity and protein kinase activity. Involved in activation of protein kinase activity and protein export from nucleus. Located in aggresome; cytosol; and nucleus.

NR:

description
PREDICTED: STE20-related kinase adapter protein beta

GO: NA

KEGG:

id description
K17532 STRADB; STE20-related kinase adapter protein beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933620.2 True 2829 mRNA 0.45 12 25745383 25755348

Neighbor

gene id symbol gene type direction distance location
rbm26 rbm26,LOC107672672,LOC107690205,LOC107746592 coding downstream 70887 25662000 ~ 25674496 (-)
obi1 rnf219 coding downstream 164841 25570021 ~ 25580542 (-)
pou4f1 pou4f1,LOC103143517,LOC107672640,LOC107709069 coding downstream 181294 25560790 ~ 25564089 (-)
LOC113538330 pcdh9,LOC107582331 coding downstream 575123 24968550 ~ 25170260 (-)
brinp3a.2 brinp3a.2,LOC108440126,LOC107711116,LOC108271609,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 1363890 24330165 ~ 24381493 (-)
trim25l LOC108271643 coding upstream 39878 25795226 ~ 25813178 (-)
LOC113538391 NA coding upstream 56538 25811886 ~ 25817786 (-)
gpr180 gpr180 coding upstream 305107 26060455 ~ 26068892 (-)
si:ch73-193c12.2 LOC108273213 coding upstream 457405 26212753 ~ 26218578 (-)
ccdc80l1 ccdc80,LOC108273094,LOC107565956 coding upstream 488592 26243940 ~ 26252248 (-)
LOC117599130 NA non-coding downstream 83419 25658315 ~ 25661964 (-)
G33166 NA non-coding downstream 313415 25431758 ~ 25431968 (-)
LOC113538494 NA non-coding downstream 505030 25206722 ~ 25240353 (-)
G32923 NA non-coding downstream 920949 24824235 ~ 24824434 (-)
LOC117599074 NA non-coding downstream 945958 24794547 ~ 24799425 (-)
G33538 fbxl3a,fbxl3,LOC108273248,LOC108436444,LOC107664003,LOC107670904 non-coding upstream 81950 25837298 ~ 25843332 (-)
G33621 NA non-coding upstream 322027 26077375 ~ 26077901 (-)
G33617 NA non-coding upstream 334030 26089378 ~ 26109660 (-)
G33645 psmb3,LOC107586359,LOC107688824,LOC102792592 non-coding upstream 467115 26222463 ~ 26227188 (-)
G33697 NA non-coding upstream 484119 26239467 ~ 26242883 (-)
nbeal1 nbeal1 other downstream 6566 25680090 ~ 25738817 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 2113370 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 2519835 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 3151522 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 3163440 22572432 ~ 22581943 (-)
LOC113538393 NA other upstream 145382 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 325801 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 875481 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 884485 26639833 ~ 26649379 (-)
ndufs1 ndufs1,LOC103033212,LOC107555450,LOC107748553,LOC107705604,LOC107660088,LOC107566318 other upstream 1990776 27746124 ~ 27757546 (-)

Expression


Co-expression Network