psmb3 (psmb3,LOC102792592,LOC107688824)


Basic Information

Item Value
gene id psmb3
gene name psmb3,LOC102792592,LOC107688824
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26222530 ~ 26229916 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933639.2
TCGCATtagaagacgaagaagaagccTGAGGCGGAAGTAGCTGCTGGAAGAAACTGTGTAGTCACTGTGTGTGACCGGTCTCAAACCAAGCtattagtaaattaaataattttgcgTTTTGGTTGCTTTCTTCATTACCAGCACCATGTCTATAATGTCATATAATGGAGGGGCTGTCATGGCCATGCGTGGGAAGGACTGCGTTGCAATTGCGTCTGATCGGCGGTTTGGTATCCAAGCCCAGATGGTCACCACAGACTTTCAAAAAATCTTCCCCATGGGTGACAGACTCTACATTGGCCTGGCGGGACTGGCCACAGATGTGCAGACAGTATCTCAACGGCTCAAATTCCGTCTCAACCTGTACGAGCTGAAAGAGGGTCGTCAGATCAAGCCCAAGACCTTCATGAGCATGGTGTCCAACCTGCTGTATGAGAGGAGGTTTGGACCGTACTACATTGAGCCTGTGATTGCTGGTCTGGACCCAAAAACCTTCGAGCCTTTCATCTGTTCCTTGGACCTGATTGGCTGCCCCATGATAACAGAAGACTTTGTGGTCAGTGGCACTTGTGCCGAGCAGATGTATGGCATGTGTGAGTCGTTATGGGAGCCTAACATGGAGCCAGAGGATCTGTTTGAGACTATTTCACAGGCAATGCTGAATGCAGTCGATAGAGATGCTGTTTCTGGCATGGGAGTTATAGTGCATGTCATTGAGAAAGATAAGATAACTACACGGACCCTGAAGGCCAGAATGGACTAGAAACACCAATGCCACTGCTTTTCTCTCctcagaattcttttttttttttgtatgtaatagaaaaaaacattttggatcCATTTCTCCTTTAAGATGTGTTGTTCAATAAATTGATCTACCATTTGA

Function

symbol description
psmb3 Predicted to enable threonine-type endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex, beta-subunit complex. Orthologous to human PSMB3 (proteasome 20S subunit beta 3).

NR:

description
PREDICTED: proteasome subunit beta type-3

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02735 PSMB3; 20S proteasome subunit beta 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933639.2 True 889 mRNA 0.46 6 26222530 26229916

Neighbor

gene id symbol gene type direction distance location
LOC113538326 unc80,LOC107688825 coding upstream 11350 26141682 ~ 26211180 (+)
nomo nomo,LOC108273232,LOC108438153,LOC107677623,LOC107562229,LOC107709581 coding upstream 82752 26114808 ~ 26139778 (+)
LOC113538206 tgds coding upstream 146763 26068906 ~ 26075767 (+)
sox21a sox21 coding upstream 162163 26057042 ~ 26060367 (+)
abcc4 abcc4,LOC107659955,LOC107678162 coding upstream 171572 25993932 ~ 26050958 (+)
slc19a2 slc19a2 coding downstream 2913 26232829 ~ 26240066 (+)
faimb LOC108273096,LOC108437684,LOC103044688 coding downstream 32909 26262825 ~ 26264287 (+)
ackr3b ackr3 coding downstream 254734 26484650 ~ 26489299 (+)
trim63a NA coding downstream 300987 26530903 ~ 26532518 (+)
mlpha mlph coding downstream 310531 26540447 ~ 26553487 (+)
LOC117595850 NA non-coding upstream 7097 26214465 ~ 26215433 (+)
G33340 NA non-coding upstream 88833 26090617 ~ 26133697 (+)
G33352 NA non-coding upstream 180230 26041835 ~ 26042300 (+)
G33332 NA non-coding upstream 250140 25957913 ~ 25972390 (+)
G33331 NA non-coding upstream 266283 25954869 ~ 25956247 (+)
G33383 NA non-coding downstream 14026 26243942 ~ 26298782 (+)
G33395 NA non-coding downstream 69080 26298996 ~ 26304744 (+)
G33397 NA non-coding downstream 83099 26313015 ~ 26317787 (+)
G33410 NA non-coding downstream 181340 26411256 ~ 26411456 (+)
G33440 NA non-coding downstream 327972 26557888 ~ 26558405 (+)
trak2 LOC108271640 other upstream 437640 25756814 ~ 25784890 (+)
LOC117598985 NA other upstream 1566282 24652990 ~ 24656248 (+)
G32684 NA other upstream 2201494 24020378 ~ 24021036 (+)
uhmk1 uhmk1,LOC107692420 other upstream 2568975 23633606 ~ 23653555 (+)
tmem69 tmem69 other upstream 3619094 22597595 ~ 22603436 (+)
agap1 agap1,LOC108272907,LOC103044997,LOC107586321,LOC107688827,LOC107709574 other downstream 35581 26265497 ~ 26408396 (+)
st6gal2b LOC108273345,LOC108272416,LOC107559918,LOC108437696,LOC107748583,LOC107688887,LOC103032506 other downstream 383734 26613650 ~ 26649387 (+)
adam23a adam23,LOC107705602,LOC107748557,LOC107688856,LOC107660086 other downstream 1539880 27769796 ~ 27787602 (+)
ten1 ten1 other downstream 1748881 27978797 ~ 27983171 (+)
ldlrb LOC108273208 other downstream 2891526 29121442 ~ 29176269 (+)

Expression


Co-expression Network