pde6d (pde6d)


Basic Information

Item Value
gene id pde6d
gene name pde6d
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20467149 ~ 20472065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936757.2
GGGTGGTttagctgtcaatcacagaTACAGGCTCTTTTTACAGTAGGTTGAGAAGAACGATTGAGTATATCTCTGTTCAGATTAACGCAGTGCTGTTGGTTAAAAAAGTGATATATCCAGCTGGGTAAATTGTCATTTCTTAGGATATTTGTCATATTCTGACGAATaggttttgggttttttttattcaccaaAGCGGACTGTTTTTCGAAGCCATGTCTTCGGACGAAGACCGAGCAAAGGAGATTCTGAAGGGCTTTAAATTAAACTGGATGAACCTGAGGGACGCAGAGACGGGGAAAGTTCTCTGGCAGGGGACTGAAGATCTCTCTGTTCCTGGTGTAGAACATGAAGCTCGGGTTCCCAAAAAGATCCTAAAATGTAAAGCTGTTTCCAGAGAGCTTAATTTCTCCTCATCGGAAAAGCTGGAAAAGTTTCGTCTGGAGCAGAAGGTTCTCTTCAAAGGCCAGTGTCTAGAAGAGTGGTTCTTTGAATTTGGCTTTGTGATCCCTAATTCTACAAACACATGGCAGTCCTTGATAGAGGCAGCACCCGAGTCACAGATGATGCCTGCTAACGTGTTAACTGGAAATGTTGTCATAGAGACGAAATTCTACGACGACGAGCTTCATGTCAGCACCTCTCGAGTACGGCTTTTCTACGTCTGAGATGTGAAGCCtctccttttttaaattctgtcaTTCAGAAGGATGCACACATCgctgtgagttttttttaatggccaGACGAGACTCTGCTTAATGAGTATTTCCATGGCACCATGACAACGGCACTAAAGGGAACAAGTCGAGCAAACTAAATTTCAGGTTAAACAGTCATACCAGTTTAATGACAGATAAAGACTTGGAAACAAGGGCAGTGATGCTCATGTCAACCTGACCatgtaaattgttttatttgtacatttttttcccccctcacttatctttttttttttttttt

Function

symbol description
pde6d Acts upstream of or within eye development and kidney development. Predicted to be located in cytoplasmic vesicle membrane; cytoskeleton; and cytosol. Predicted to be active in cytoplasm. Is expressed in epiphysis; olfactory bulb; olfactory placode; and retina. Human ortholog(s) of this gene implicated in Joubert syndrome 22. Orthologous to human PDE6D (phosphodiesterase 6D).

NR:

description
retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13758 PDE6D; retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936757.2 True 963 mRNA 0.42 5 20467149 20472065

Neighbor

gene id symbol gene type direction distance location
usp13 usp13,LOC107659032 coding upstream 107498 20335631 ~ 20359651 (+)
ndufb5 ndufb5,LOC107709185,LOC107659010,LOC107692354 coding upstream 133458 20329443 ~ 20333691 (+)
actl6a actl6a coding upstream 142570 20315025 ~ 20324579 (+)
si:ch211-201h21.5 LOC108271508,LOC108427703 coding upstream 201656 20258821 ~ 20265493 (+)
zgc:172121 LOC108271828 coding upstream 217691 20245574 ~ 20249458 (+)
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding downstream 1206 20473271 ~ 20480074 (+)
ptmaa NA coding downstream 40724 20512789 ~ 20516555 (+)
meltf meltf coding downstream 186754 20658819 ~ 20671746 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding downstream 202336 20674401 ~ 20683491 (+)
shroom2a shroom2 coding downstream 352275 20824340 ~ 20871696 (+)
G30489 NA non-coding upstream 37900 20428913 ~ 20429249 (+)
G30485 NA non-coding upstream 43216 20423727 ~ 20423933 (+)
G30467 NA non-coding upstream 62594 20404351 ~ 20404555 (+)
G30455 NA non-coding upstream 86167 20380770 ~ 20380982 (+)
G30448 NA non-coding upstream 94087 20372706 ~ 20373062 (+)
LOC113534552 NA non-coding downstream 8909 20480974 ~ 20484378 (+)
G30536 NA non-coding downstream 12400 20484465 ~ 20487210 (+)
G30543 NA non-coding downstream 32974 20505039 ~ 20505637 (+)
G30545 NA non-coding downstream 34258 20506323 ~ 20506646 (+)
G30620 NA non-coding downstream 208335 20680400 ~ 20680770 (+)
LOC113543059 c11h1orf146 other upstream 446923 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 929952 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1379938 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1518412 18932683 ~ 18948737 (+)
trnai-aau NA other upstream 1649674 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 64908 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 542773 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2125530 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3161541 23633606 ~ 23653555 (+)
G32684 NA other downstream 3548313 24020378 ~ 24021036 (+)

Expression


Co-expression Network