si:ch73-15b2.5 (LOC108272055)


Basic Information

Item Value
gene id si:ch73-15b2.5
gene name LOC108272055
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16400949 ~ 16406482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938250.2
GTGAAGTGTGATGTCAATCAATGAGCCACACCTGAGGAGTCAAATCTGCAGCAGACGAGTGAGGACTTGCTGTCAGTGAGCAGggaagagaggtcagaggtccaTCTTCACGGCTTTAAATTGGTGTGAGACCAAATGGCCTACAGCCATGCTCCAGTTTGTGACTCTCCACGGTCTGAGATGGAGCAACACCGTTTCATAACGACTCAAGAGGATTCCCAAGCACCAGAAACAGTTTTTGGCGCCTCAGGTGGGATTGCTGAAGCTCTGAGATCAGTTGCGAGAGCAGACACGTGGAGTCTTCAGCGGGTTTTTCTCCAGACTGCATCACTCCTCAATGCAGAGGATCAAAACCCCAGTCTCACTCTCGCGCCAGATTCCCCTGTTCTGCTCAGTGCACGAGATGAGGACAAACGctccATGACCGATACTCAGGACAAAATTCAAGAGGAAACATTTGAAGTGAACATAAAATACATCACTGGTTCAGTGCCTCTGTATCAGGAGTACTGGCTGAAATGTATGAAGGCCGAGTTACAGAAGGCGCAGCATAAAAAACTGGCAGGCATTGTGGAAGCACGGTGTCGATCTGCCGGGCCCTCTCCTGCTGCACCAAGCCCAACTTGTGTATCAAGCCCGCCAGGACTGCATGTGGCACCATACGCCCTGTGGCAGCAGCTGCCCGAAGTAAAGAGGCAAAACTTGCTGCACACACTTACAGCCAGAGACATTCGCCATCAGGAGGCCATGTTTGAACTGATTGTGTCAGAGGCTTCATATCAGAAGAGTTTGCGAGTGGCAGTTGGACTGTTTCAGTCCTCGGCTCAGCTGAAGCAAACTTTAACTCCCGTGCAGAATCATGTCTTATTTTCCAACTTAAAGGAAGTCTGCAGGGTCAGTGAGGGATTTCTTCAGGATCTGGAGACTCGACTGGGGCAGAATGTGGTGATGTGTAAGGTTGGAGACATTGTACTGAATCACAAATCAAAGTTTCGTCGAGTCTACGTGCCCTATGTCACCAACATGATGTATCAGGAGACCCTTATTGCAAACCTTTTAGAAGAAAACCGGAAATTTGTGCTGGCCTTAAAGAAGCTTGAGAAGGACCCACTTTGCCAGAGACAGACACTCAAGTCCTTCCTGATCCTTCCCTTCCAAAGGATAACAAGATTAAGGCTTATTTTAGAGAATATCCTTAAAAGGACCGACGAACACTCCACTGACATTCCCAACCTAAAGAGTGCAATTGAAGCTGTACGAGAGGTAGTAGTGGAGTGTGACTGCAACGTCCAGCAAATGAAACGGACAGAGGAACTGGTTAGCTTGGAAAAGCTTGTGGATTTTGCCAGTGTCAAGTCAGTACCTTTGATCGTAAGTGGCCGTTATCTGATTCGAGCGGGACCCTTGAAAAAGTTGATGGTCAAGAGTAATCAGACCTCAGGCTCCCTGGTCTCTCGCACAGACATCTACCTGCATCTCTTCAATGACCTCTTGCTCCTCTCAGTCAAGAATGGCAACAGATTCAGCGTTCAAGATCATGCAGTGTTTCCTGCCAATGTTCGTGTAGAGGAGTTAAAGACTAAGATGTTGGGACTGCCACCTGATGCCTTCCTGCTCCATCTCACCCAAAACCACTTACGAGCTGCTACTGCTGTTATACTCACTGCACAGACACGGATGGAAAAAGAGACCTGGCTCCAACTTTTATCTTCACAGAATTGCACCATGGCTAATACAGAGACCAAGAAtgtttaaacacttttattaaGTATTATATGTAACTTTTTTGAATCCACTTGTATGACTAAACCTGCTAGAACGTCAGATCATATAGATTGTGAACTTTAAGTTATACAtgaaacattatttatagtaaataaagTTTGTAATAAAGTCA
>XM_034310450.1
GTGAAGTGTGATGTCAATCAATGAGCCACACCTGAGGAGTCAAATCTGCAGCAGACGAGTGAGGACTTGCTGTCAGTGAGCAGggaagagaggtcagaggtccaTCTTCACGGCTTTAAATTGGTGTGAGACCAAATGGCCTACAGCCATGCTCCAGTTTGTGACTCTCCACGGTCTGAGATGGAGCAACACCGTTTCATAACGACTCAAGAGGATTCCCAAGCACCAGAAACAGTTTTTGGCGCCTCAGGTGGGATTGCTGAAGCTCTGAGATCAGTTGCGAGAGCAGACACGTGGAGTCTTCAGCGGGTTTTTCTCCAGACTGCATCACTCCTCAATGCAGAGGATCAAAACCCCAGTCTCACTCTCGCGCCAGATTCCCCTGTTCTGCTCAGTGCACGAGATGAGGACAAACGctccATGACCGATACTCAGGACAAAATTCAAGAGGAAACATTTGAAGTGAACATAAAATACATCACTGGTTTGCCTCTGTATCAGGAGTACTGGCTGAAATGTATGAAGGCCGAGTTACAGAAGGCGCAGCATAAAAAACTGGCAGGCATTGTGGAAGCACGGTGTCGATCTGCCGGGCCCTCTCCTGCTGCACCAAGCCCAACTTGTGTATCAAGCCCGCCAGGACTGCATGTGGCACCATACGCCCTGTGGCAGCAGCTGCCCGAAGTAAAGAGGCAAAACTTGCTGCACACACTTACAGCCAGAGACATTCGCCATCAGGAGGCCATGTTTGAACTGATTGTGTCAGAGGCTTCATATCAGAAGAGTTTGCGAGTGGCAGTTGGACTGTTTCAGTCCTCGGCTCAGCTGAAGCAAACTTTAACTCCCGTGCAGAATCATGTCTTATTTTCCAACTTAAAGGAAGTCTGCAGGGTCAGTGAGGGATTTCTTCAGGATCTGGAGACTCGACTGGGGCAGAATGTGGTGATGTGTAAGGTTGGAGACATTGTACTGAATCACAAATCAAAGTTTCGTCGAGTCTACGTGCCCTATGTCACCAACATGATGTATCAGGAGACCCTTATTGCAAACCTTTTAGAAGAAAACCGGAAATTTGTGCTGGCCTTAAAGAAGCTTGAGAAGGACCCACTTTGCCAGAGACAGACACTCAAGTCCTTCCTGATCCTTCCCTTCCAAAGGATAACAAGATTAAGGCTTATTTTAGAGAATATCCTTAAAAGGACCGACGAACACTCCACTGACATTCCCAACCTAAAGAGTGCAATTGAAGCTGTACGAGAGGTAGTAGTGGAGTGTGACTGCAACGTCCAGCAAATGAAACGGACAGAGGAACTGGTTAGCTTGGAAAAGCTTGTGGATTTTGCCAGTGTCAAGTCAGTACCTTTGATCGTAAGTGGCCGTTATCTGATTCGAGCGGGACCCTTGAAAAAGTTGATGGTCAAGAGTAATCAGACCTCAGGCTCCCTGGTCTCTCGCACAGACATCTACCTGCATCTCTTCAATGACCTCTTGCTCCTCTCAGTCAAGAATGGCAACAGATTCAGCGTTCAAGATCATGCAGTGTTTCCTGCCAATGTTCGTGTAGAGGAGTTAAAGACTAAGATGTTGGGACTGCCACCTGATGCCTTCCTGCTCCATCTCACCCAAAACCACTTACGAGCTGCTACTGCTGTTATACTCACTGCACAGACACGGATGGAAAAAGAGACCTGGCTCCAACTTTTATCTTCACAGAATTGCACCATGGCTAATACAGAGACCAAGAAtgtttaaacacttttattaaGTATTATATGTAACTTTTTTGAATCCACTTGTATGACTAAACCTGCTAGAACGTCAGATCATATAGATTGTGAACTTTAAGTTATACAtgaaacattatttatagtaaataaagTTTGTAATAAAGTCA

Function

NR:

description
rho guanine nucleotide exchange factor 19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938250.2 True 1897 mRNA 0.46 13 16400949 16406482
XM_034310450.1 False 1894 mRNA 0.46 13 16400949 16406482

Neighbor

gene id symbol gene type direction distance location
LOC113541386 cf125,uqcc2,LOC108440614,LOC107580205,LOC107667355,LOC106565356 coding downstream 2548 16394241 ~ 16398401 (-)
frs3 frs3,LOC107667350,LOC107584505,LOC107568202,LOC107673473,LOC107712068 coding downstream 14729 16372782 ~ 16386220 (-)
eno1b eno1b,LOC108271510,LOC108440571,LOC107721178,LOC107568188,LOC107712086 coding downstream 46808 16346585 ~ 16354141 (-)
rereb LOC108271943,LOC108440553,LOC107721179,LOC107584416 coding downstream 54669 16327871 ~ 16346280 (-)
iho1 ccdc36 coding downstream 101043 16288171 ~ 16299906 (-)
ddi2 ddi2,LOC102794950,LOC107721177,LOC107673502,LOC107667352 coding upstream 94 16406576 ~ 16416819 (-)
prkcda LOC108271968,LOC108440644,LOC107582675,LOC103030273,LOC107667398,LOC107721176,LOC107673500,LOC107712078 coding upstream 12778 16419260 ~ 16430096 (-)
LOC113531657 LOC108272136 coding upstream 30358 16436840 ~ 16454566 (-)
rad54l rad54l coding upstream 69943 16476425 ~ 16488929 (-)
LOC113523777 artn coding upstream 85199 16491681 ~ 16519158 (-)
G28508 NA non-coding downstream 41428 16358139 ~ 16359521 (-)
G28515 NA non-coding downstream 71528 16329108 ~ 16329421 (-)
G28385 NA non-coding downstream 134194 16266556 ~ 16266755 (-)
G28384 NA non-coding downstream 135789 16264924 ~ 16265160 (-)
G28383 NA non-coding downstream 136707 16263614 ~ 16264242 (-)
G28537 NA non-coding upstream 55620 16462102 ~ 16489915 (-)
G28779 NA non-coding upstream 164308 16570790 ~ 16571524 (-)
G29119 NA non-coding upstream 647606 17054088 ~ 17054656 (-)
G29167 LOC108272186 non-coding upstream 986976 17393458 ~ 17394467 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding upstream 988284 17394766 ~ 17396199 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 265234 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 905740 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 939948 15456635 ~ 15461001 (-)
G27843 NA other downstream 1101930 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1524959 14872948 ~ 14875990 (-)
G29158 NA other upstream 866473 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1065848 17472330 ~ 17529315 (-)
G29263 NA other upstream 1542675 17949157 ~ 17949718 (-)
G29279 NA other upstream 1664505 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1741746 18148228 ~ 18195628 (-)

Expression


Co-expression Network