tspo (tspo,LOC107721166,LOC107568174,LOC107667354)


Basic Information

Item Value
gene id tspo
gene name tspo,LOC107721166,LOC107568174,LOC107667354
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16391412 ~ 16394007 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938484.2
CTGCATTGTTATTTAACGTTTCAGGACGTGTTTAACCCCACGCACAGCCTTCACCCCGTCTAGAACAACGACACACCTGGTATTTCAAGTCATATAAGAATTTTCTGCATCTCTTTGTTGGAGCCATGTGGACGGCCATGCTGGGACTGACCGCCCTACCACATGTTGGTGGGATCTGTGGAGCCTTTATCACAAGAAGAGAGACGAAAACGTGGTATGTCTCGCTTAACAAACCGTCATGGAGGCCACCCAACTCTGCTTTTGGAGTAGTATGGACAGCTTTATACACTGGCATGGGGTATGGTTCATACCTGGTGTATAAAGAGCTGGGAGGCTTCACAGAAGATGCTATGGTCCCACTGGGACTCTATGGCCTGCAGCTGGCACTGAACTGGGCCTGGACCCCTATCTTTTTTGGGGCACACAAGATCAAACTGGCACTCATTGAGCTTGTTGTGCTGACGGGCACAGTGGCCGCCACCATGGTGTCCTGGTACCCAGTGAACCGCACTGCCACACTCCTCCTGACTCCATACCTGGCCTGGCTCTGCTTGGCCACCTCCCTCAACTACTGTATCTGGAGGGACAATCCTGACACCAAAGAAGACTAGAGAGGgcaaatatgtaaataacatGCACTAGTAGGCACATTATGACTCTTCATggccattaaaacaaatatgCCTGTAACCATATTCAAGCGAATATACGAATTAAATCATGGCAGCTGCTTGACTAATGAAGTTCTCAAGTAGGAGAATTAATATATACTAACATTTAGCTCACATCTCTGttggctttttaaaataaaatattttaatatgtttatatcaATATGTAATTTCTCTGTTAATAACTTTTGATTTCTTGTTAGTAAAAAAAGACAATCCAATCCACCCACACAACTAATGAacatttaagcaaaaaaaaaaaaaaaaaaaaaaaaaaatccactacaATTTTGCCTGCATGATTGATTTTGTatcaattattcatttaatggTTTGTATGtgttccaaataaaaaaaaatgttggccGACA
>XM_026938572.2
CATTGTTATTTAACGTTTCAGGACGTGTTTAACCCCACGCACAGCCTTCACCCCGTCTAGAACAACGACACACCTGGTATTTCAAGCCATGTGGACGGCCATGCTGGGACTGACCGCCCTACCACATGTTGGTGGGATCTGTGGAGCCTTTATCACAAGAAGAGAGACGAAAACGTGGTATGTCTCGCTTAACAAACCGTCATGGAGGCCACCCAACTCTGCTTTTGGAGTAGTATGGACAGCTTTATACACTGGCATGGGGTATGGTTCATACCTGGTGTATAAAGAGCTGGGAGGCTTCACAGAAGATGCTATGGTCCCACTGGGACTCTATGGCCTGCAGCTGGCACTGAACTGGGCCTGGACCCCTATCTTTTTTGGGGCACACAAGATCAAACTGGCACTCATTGAGCTTGTTGTGCTGACGGGCACAGTGGCCGCCACCATGGTGTCCTGGTACCCAGTGAACCGCACTGCCACACTCCTCCTGACTCCATACCTGGCCTGGCTCTGCTTGGCCACCTCCCTCAACTACTGTATCTGGAGGGACAATCCTGACACCAAAGAAGACTAGAGAGGgcaaatatgtaaataacatGCACTAGTAGGCACATTATGACTCTTCATggccattaaaacaaatatgCCTGTAACCATATTCAAGCGAATATACGAATTAAATCATGGCAGCTGCTTGACTAATGAAGTTCTCAAGTAGGAGAATTAATATATACTAACATTTAGCTCACATCTCTGttggctttttaaaataaaatattttaatatgtttatatcaATATGTAATTTCTCTGTTAATAACTTTTGATTTCTTGTTAGTAAAAAAAGACAATCCAATCCACCCACACAACTAATGAacatttaagcaaaaaaaaaaaaaaaaaaaaaaaaaaatccactacaATTTTGCCTGCATGATTGATTTTGTatcaattattcatttaatggTTTGTATGtgttccaaataaaaaaaaatgttggccGACA

Function

symbol description
tspo Acts upstream of or within primitive erythrocyte differentiation. Predicted to be located in membrane. Predicted to be active in mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axial blood vessel; blastomere; hematopoietic system; nervous system; and pleuroperitoneal region. Orthologous to several human genes including TSPO (translocator protein).

NR:

description
translocator protein

GO:

id name namespace
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05770 TSPO, BZRP; translocator protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938484.2 True 1042 mRNA 0.42 4 16391412 16394007
XM_026938572.2 False 1005 mRNA 0.42 4 16391415 16394007

Neighbor

gene id symbol gene type direction distance location
ppil1 ppil1,LOC107667353,LOC107673584 coding upstream 25475 16363671 ~ 16365937 (+)
si:ch211-157b11.14 LOC108271613 coding upstream 63260 16321000 ~ 16328152 (+)
LOC113527565 NA coding upstream 70840 16317108 ~ 16320572 (+)
c2h1orf159 c11h1orf159 coding upstream 78168 16306061 ~ 16313244 (+)
akap14 akap14 coding upstream 88956 16301268 ~ 16302456 (+)
LOC113544464 LOC100335019,LOC108438034,LOC103026398,LOC100706528,LOC101066223 coding downstream 66394 16460401 ~ 16463536 (+)
lrrc41 lrrc41 coding downstream 70936 16464943 ~ 16475146 (+)
hyi hyi coding downstream 660125 17054132 ~ 17066099 (+)
LOC117595909 NA coding downstream 785236 17179243 ~ 17184683 (+)
glulb LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462 coding downstream 998322 17392329 ~ 17396139 (+)
G28410 NA non-coding upstream 30065 16358082 ~ 16361347 (+)
G28405 NA non-coding upstream 45326 16345645 ~ 16346086 (+)
G28404 NA non-coding upstream 54718 16336192 ~ 16336694 (+)
G28402 LOC108271943 non-coding upstream 56760 16333451 ~ 16334652 (+)
G28361 NA non-coding upstream 121860 16268709 ~ 16269552 (+)
G28446 NA non-coding downstream 42114 16436121 ~ 16440771 (+)
LOC117599087 NA non-coding downstream 95071 16489078 ~ 16494312 (+)
G28574 NA non-coding downstream 139868 16533875 ~ 16535345 (+)
G28676 ptprf non-coding downstream 335207 16729214 ~ 16731205 (+)
LOC113524191 NA non-coding downstream 448237 16842244 ~ 16843385 (+)
mustn1a LOC108272082,LOC108439813 other upstream 209103 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 288164 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 600968 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 1086918 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2885408 13490161 ~ 13506004 (+)
tomm6 tomm6 other downstream 4238 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2380763 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2423395 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2538676 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2667090 19061097 ~ 19087211 (+)

Expression


Co-expression Network