scly (scly)


Basic Information

Item Value
gene id scly
gene name scly
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19052122 ~ 19060672 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938931.2
GAAATTACTCAAGCGAAATCTCTAGTATTTATGGCTGGCTATATGATAATTAATAGGTTGTAAAATTAGCAGCACGCGGTGGATGGCTGTGTGTGAGGCTGGGCTGGGCTTACACGTGTCTGTCGGATGTTGTAAAAATGacAATGTGTGAGAAGGCTGGCTCCTCAGATCCTCTGGCGCAGAGTCCACAGGACAAGGCAGCGGTGGACCTGGACCATCACCGTAAGCGTGTGGAGCATGTGGTTAGTCCTGCTTTGAGCAGAATCTATATGGACTACAATGCCACTACTCCAGTTGATCCTGAGGTGGTCCGTGTGGTCACTGAGGCTTTAACTGAAGCTTGGGGGAACCCCAGCAGCATGTACCTGCCAGGCCTGAAAGCCAAAGACATCATTAATCAGTCGCGAGAGAGCGTAGCCAGGATGGTTGGTGGAAAGGCAACGGACATCATATTTACATCAGGTGGCACTGAGGCTAATAACATGGTGTTCCACTCAGCGATGGAACACTACTGGAAGAACAGCATGCCAGCTGAGGGCGGACGTGAGGAAAATTATCATCTTAATGGCAAAAGGATCCTTCctcacatcatcacatccaATGTGGAGCATGATTCTGTCAAACTCGTGGCTGAACACCTGGTAAAAATGGGCAAGGCAGATGTCACGTTCCTGCCTGTTTCTAGAGTGACGGGCcgggtggaggtggaggacgTGATGGCAGCGCTACGTCCCTCCACATGCCTGGTGTCAGTAATGCTGGCCAACAATGAGACAGGCGTTATTATGCCAATTAGGGAGATTTGTCAGAGGGTGAAGGCAGCAAAAAGATCACCGTCTTCTCCCAGAATTCTGCTGCACACGGATGCGGCGCAGGCCATCGGGAAGATCCGTGTGGATGCCCAAGAGCTGGGGGTGGATTACATTACAATAGTTGGACACAAGTTTTACGCTTCTCGAATCGGCGCCTTGTTTGCGAATGGTCCTGGAACGATGACTCCTCTTTACCCTTTGCTCTTTGGCGGAGGACAGGAGCGCAACTTTAGACCAGGGACTGAGAACACAGCAATGATTGCTGGTCTGGGGAAGGCTGCAGAGTTGGTGACAGCAAACCTGGTGAAAGACGAGTCTCATCTGCTGGATATCAGACTTTACCTGGAGCAGAGGCTGCTGACTGTGTTTGGAAAAGAGAAGCTTCGTTTTAACAGTCATTTCCATGGAACAGACACACTACCCAACACGTGCAACGTGTCTATTTTGGGACAAGGACTTCATGGCCGAAGAGTGCTGTCCACATGTAGGAGATTACTGGCCAGCGTGGGCGCTGCCTGTCACTCAGACCACGGAGATCAGCCTTCCTATATTCTGCTGAACTGTGGGATCCCATACCATGTAGCAATAAATGCTCTGAGGATTAGTGTGGGTCGAGGGACATCACGGGAGGATGTGGACATCGTGGTAGAGGACCTCCGGGACACAGTGGAGCGATTGGAGCAAATGAATTAGAGTCTTTTTCCTAGAGCACCGCTTGTGGTGGGGATGTTGAACAACAGAAACTCATGCTTTGGTATCATTAGCTGAAGGTAATGATCAAGGCAGGGAAAGCGGTAAGAGGTGACAGATTATGACTTAAAATAACACAGTTCTATTGTGGCTtagagtttattttaaatgggTTAATTTTTATGGTATCGAGATTCCTCTTCCTTTGGTACACTGTAACGATACAATGACTGGTTGTGTACAATGACAGGTTATGTACAGTGACAGGTTATGTACAGCTAAATGCACTAATTATCTAAAGTACTGTTACAGGCCTGAATGtttaaagtgaattatttattaatttggttaatatatattcttaatatatatacaatggCTTTTATGGAAGCATAGGTTGAGCATGCATGTTGTATTAAAGTAGAAATATCTGTAGTGCATTGCactgaatgtgcacaaatgaagcTGGAATATTATTAGCATGTATCAAGTAGGTGGTACTcttgtttggctttttttttttgtttttttaaacctgatgtTGAATTGTGTTCTGTCATCATTAAAGATCACAAGCTTCAA
>XM_026939015.2
CTTGTTAGGACACCGGCACCACTGGTGACGCAAGCGCCCCCAGTGGGAGGAGCCTGGGTTGGTGTACTTCCTGTTTagggtctgtctgtctgtcatcaAAGAGGATGCCGGTAAATCATTAACAAGATACAAGTCTTCTAacAATGTGTGAGAAGGCTGGCTCCTCAGATCCTCTGGCGCAGAGTCCACAGGACAAGGCAGCGGTGGACCTGGACCATCACCGTAAGCGTGTGGAGCATGTGGTTAGTCCTGCTTTGAGCAGAATCTATATGGACTACAATGCCACTACTCCAGTTGATCCTGAGGTGGTCCGTGTGGTCACTGAGGCTTTAACTGAAGCTTGGGGGAACCCCAGCAGCATGTACCTGCCAGGCCTGAAAGCCAAAGACATCATTAATCAGTCGCGAGAGAGCGTAGCCAGGATGGTTGGTGGAAAGGCAACGGACATCATATTTACATCAGGTGGCACTGAGGCTAATAACATGGTGTTCCACTCAGCGATGGAACACTACTGGAAGAACAGCATGCCAGCTGAGGGCGGACGTGAGGAAAATTATCATCTTAATGGCAAAAGGATCCTTCctcacatcatcacatccaATGTGGAGCATGATTCTGTCAAACTCGTGGCTGAACACCTGGTAAAAATGGGCAAGGCAGATGTCACGTTCCTGCCTGTTTCTAGAGTGACGGGCcgggtggaggtggaggacgTGATGGCAGCGCTACGTCCCTCCACATGCCTGGTGTCAGTAATGCTGGCCAACAATGAGACAGGCGTTATTATGCCAATTAGGGAGATTTGTCAGAGGGTGAAGGCAGCAAAAAGATCACCGTCTTCTCCCAGAATTCTGCTGCACACGGATGCGGCGCAGGCCATCGGGAAGATCCGTGTGGATGCCCAAGAGCTGGGGGTGGATTACATTACAATAGTTGGACACAAGTTTTACGCTTCTCGAATCGGCGCCTTGTTTGCGAATGGTCCTGGAACGATGACTCCTCTTTACCCTTTGCTCTTTGGCGGAGGACAGGAGCGCAACTTTAGACCAGGGACTGAGAACACAGCAATGATTGCTGGTCTGGGGAAGGCTGCAGAGTTGGTGACAGCAAACCTGGTGAAAGACGAGTCTCATCTGCTGGATATCAGACTTTACCTGGAGCAGAGGCTGCTGACTGTGTTTGGAAAAGAGAAGCTTCGTTTTAACAGTCATTTCCATGGAACAGACACACTACCCAACACGTGCAACGTGTCTATTTTGGGACAAGGACTTCATGGCCGAAGAGTGCTGTCCACATGTAGGAGATTACTGGCCAGCGTGGGCGCTGCCTGTCACTCAGACCACGGAGATCAGCCTTCCTATATTCTGCTGAACTGTGGGATCCCATACCATGTAGCAATAAATGCTCTGAGGATTAGTGTGGGTCGAGGGACATCACGGGAGGATGTGGACATCGTGGTAGAGGACCTCCGGGACACAGTGGAGCGATTGGAGCAAATGAATTAGAGTCTTTTTCCTAGAGCACCGCTTGTGGTGGGGATGTTGAACAACAGAAACTCATGCTTTGGTATCATTAGCTGAAGGTAATGATCAAGGCAGGGAAAGCGGTAAGAGGTGACAGATTATGACTTAAAATAACACAGTTCTATTGTGGCTtagagtttattttaaatgggTTAATTTTTATGGTATCGAGATTCCTCTTCCTTTGGTACACTGTAACGATACAATGACTGGTTGTGTACAATGACAGGTTATGTACAGTGACAGGTTATGTACAGCTAAATGCACTAATTATCTAAAGTACTGTTACAGGCCTGAATGtttaaagtgaattatttattaatttggttaatatatattcttaatatatatacaatggCTTTTATGGAAGCATAGGTTGAGCATGCATGTTGTATTAAAGTAGAAATATCTGTAGTGCATTGCactgaatgtgcacaaatgaagcTGGAATATTATTAGCATGTATCAAGTAGGTGGTACTcttgtttggctttttttttttgtttttttaaacctgatgtTGAATTGTGTTCTGTCATCATTAAAGATCACAAGCTTCAA
>XM_026939069.2
ATGTGAAGGTCCCACTGATTTTAGGCATTGCTGTTATTTATGACTAATTTTTTTAGGATACTGATTTACAATTTTTCATCGACTTCTGGATTAcacatccctgctgaaaaatctaGATTTTTCcagtctgaccagctaccatAACTCAGGGCGAGCTGGTTAAGCCGGCAGACCTTTGCCAGCTGacAATGTGTGAGAAGGCTGGCTCCTCAGATCCTCTGGCGCAGAGTCCACAGGACAAGGCAGCGGTGGACCTGGACCATCACCGTAAGCGTGTGGAGCATGTGGTTAGTCCTGCTTTGAGCAGAATCTATATGGACTACAATGCCACTACTCCAGTTGATCCTGAGGTGGTCCGTGTGGTCACTGAGGCTTTAACTGAAGCTTGGGGGAACCCCAGCAGCATGTACCTGCCAGGCCTGAAAGCCAAAGACATCATTAATCAGTCGCGAGAGAGCGTAGCCAGGATGGTTGGTGGAAAGGCAACGGACATCATATTTACATCAGGTGGCACTGAGGCTAATAACATGGTGTTCCACTCAGCGATGGAACACTACTGGAAGAACAGCATGCCAGCTGAGGGCGGACGTGAGGAAAATTATCATCTTAATGGCAAAAGGATCCTTCctcacatcatcacatccaATGTGGAGCATGATTCTGTCAAACTCGTGGCTGAACACCTGGTAAAAATGGGCAAGGCAGATGTCACGTTCCTGCCTGTTTCTAGAGTGACGGGCcgggtggaggtggaggacgTGATGGCAGCGCTACGTCCCTCCACATGCCTGGTGTCAGTAATGCTGGCCAACAATGAGACAGGCGTTATTATGCCAATTAGGGAGATTTGTCAGAGGGTGAAGGCAGCAAAAAGATCACCGTCTTCTCCCAGAATTCTGCTGCACACGGATGCGGCGCAGGCCATCGGGAAGATCCGTGTGGATGCCCAAGAGCTGGGGGTGGATTACATTACAATAGTTGGACACAAGTTTTACGCTTCTCGAATCGGCGCCTTGTTTGCGAATGGTCCTGGAACGATGACTCCTCTTTACCCTTTGCTCTTTGGCGGAGGACAGGAGCGCAACTTTAGACCAGGGACTGAGAACACAGCAATGATTGCTGGTCTGGGGAAGGCTGCAGAGTTGGTGACAGCAAACCTGGTGAAAGACGAGTCTCATCTGCTGGATATCAGACTTTACCTGGAGCAGAGGCTGCTGACTGTGTTTGGAAAAGAGAAGCTTCGTTTTAACAGTCATTTCCATGGAACAGACACACTACCCAACACGTGCAACGTGTCTATTTTGGGACAAGGACTTCATGGCCGAAGAGTGCTGTCCACATGTAGGAGATTACTGGCCAGCGTGGGCGCTGCCTGTCACTCAGACCACGGAGATCAGCCTTCCTATATTCTGCTGAACTGTGGGATCCCATACCATGTAGCAATAAATGCTCTGAGGATTAGTGTGGGTCGAGGGACATCACGGGAGGATGTGGACATCGTGGTAGAGGACCTCCGGGACACAGTGGAGCGATTGGAGCAAATGAATTAGAGTCTTTTTCCTAGAGCACCGCTTGTGGTGGGGATGTTGAACAACAGAAACTCATGCTTTGGTATCATTAGCTGAAGGTAATGATCAAGGCAGGGAAAGCGGTAAGAGGTGACAGATTATGACTTAAAATAACACAGTTCTATTGTGGCTtagagtttattttaaatgggTTAATTTTTATGGTATCGAGATTCCTCTTCCTTTGGTACACTGTAACGATACAATGACTGGTTGTGTACAATGACAGGTTATGTACAGTGACAGGTTATGTACAGCTAAATGCACTAATTATCTAAAGTACTGTTACAGGCCTGAATGtttaaagtgaattatttattaatttggttaatatatattcttaatatatatacaatggCTTTTATGGAAGCATAGGTTGAGCATGCATGTTGTATTAAAGTAGAAATATCTGTAGTGCATTGCactgaatgtgcacaaatgaagcTGGAATATTATTAGCATGTATCAAGTAGGTGGTACTcttgtttggctttttttttttgtttttttaaacctgatgtTGAATTGTGTTCTGTCATCATTAAAGATCACAAGCTTCAA
>XM_026939139.2
TAAAAATGGTAACAGCAAATTTTGAGCACCAACTTAGAATCAAAGTGTGTACATTCATATAAAGAAAGCgcttagtgaagatgaatgaataagtgaAAGGATGTAAATAGCTGCTCAGGAGATTTGacAATGTGTGAGAAGGCTGGCTCCTCAGATCCTCTGGCGCAGAGTCCACAGGACAAGGCAGCGGTGGACCTGGACCATCACCGTAAGCGTGTGGAGCATGTGGTTAGTCCTGCTTTGAGCAGAATCTATATGGACTACAATGCCACTACTCCAGTTGATCCTGAGGTGGTCCGTGTGGTCACTGAGGCTTTAACTGAAGCTTGGGGGAACCCCAGCAGCATGTACCTGCCAGGCCTGAAAGCCAAAGACATCATTAATCAGTCGCGAGAGAGCGTAGCCAGGATGGTTGGTGGAAAGGCAACGGACATCATATTTACATCAGGTGGCACTGAGGCTAATAACATGGTGTTCCACTCAGCGATGGAACACTACTGGAAGAACAGCATGCCAGCTGAGGGCGGACGTGAGGAAAATTATCATCTTAATGGCAAAAGGATCCTTCctcacatcatcacatccaATGTGGAGCATGATTCTGTCAAACTCGTGGCTGAACACCTGGTAAAAATGGGCAAGGCAGATGTCACGTTCCTGCCTGTTTCTAGAGTGACGGGCcgggtggaggtggaggacgTGATGGCAGCGCTACGTCCCTCCACATGCCTGGTGTCAGTAATGCTGGCCAACAATGAGACAGGCGTTATTATGCCAATTAGGGAGATTTGTCAGAGGGTGAAGGCAGCAAAAAGATCACCGTCTTCTCCCAGAATTCTGCTGCACACGGATGCGGCGCAGGCCATCGGGAAGATCCGTGTGGATGCCCAAGAGCTGGGGGTGGATTACATTACAATAGTTGGACACAAGTTTTACGCTTCTCGAATCGGCGCCTTGTTTGCGAATGGTCCTGGAACGATGACTCCTCTTTACCCTTTGCTCTTTGGCGGAGGACAGGAGCGCAACTTTAGACCAGGGACTGAGAACACAGCAATGATTGCTGGTCTGGGGAAGGCTGCAGAGTTGGTGACAGCAAACCTGGTGAAAGACGAGTCTCATCTGCTGGATATCAGACTTTACCTGGAGCAGAGGCTGCTGACTGTGTTTGGAAAAGAGAAGCTTCGTTTTAACAGTCATTTCCATGGAACAGACACACTACCCAACACGTGCAACGTGTCTATTTTGGGACAAGGACTTCATGGCCGAAGAGTGCTGTCCACATGTAGGAGATTACTGGCCAGCGTGGGCGCTGCCTGTCACTCAGACCACGGAGATCAGCCTTCCTATATTCTGCTGAACTGTGGGATCCCATACCATGTAGCAATAAATGCTCTGAGGATTAGTGTGGGTCGAGGGACATCACGGGAGGATGTGGACATCGTGGTAGAGGACCTCCGGGACACAGTGGAGCGATTGGAGCAAATGAATTAGAGTCTTTTTCCTAGAGCACCGCTTGTGGTGGGGATGTTGAACAACAGAAACTCATGCTTTGGTATCATTAGCTGAAGGTAATGATCAAGGCAGGGAAAGCGGTAAGAGGTGACAGATTATGACTTAAAATAACACAGTTCTATTGTGGCTtagagtttattttaaatgggTTAATTTTTATGGTATCGAGATTCCTCTTCCTTTGGTACACTGTAACGATACAATGACTGGTTGTGTACAATGACAGGTTATGTACAGTGACAGGTTATGTACAGCTAAATGCACTAATTATCTAAAGTACTGTTACAGGCCTGAATGtttaaagtgaattatttattaatttggttaatatatattcttaatatatatacaatggCTTTTATGGAAGCATAGGTTGAGCATGCATGTTGTATTAAAGTAGAAATATCTGTAGTGCATTGCactgaatgtgcacaaatgaagcTGGAATATTATTAGCATGTATCAAGTAGGTGGTACTcttgtttggctttttttttttgtttttttaaacctgatgtTGAATTGTGTTCTGTCATCATTAAAGATCACAAGCTTCAA

Function

symbol description
scly Predicted to enable catalytic activity. Orthologous to human SCLY (selenocysteine lyase).

NR:

description
selenocysteine lyase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01763 SCLY; selenocysteine lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938931.2 False 2084 mRNA 0.46 13 19053278 19060672
XM_026939015.2 False 2084 mRNA 0.47 13 19053132 19060672
XM_026939069.2 True 2129 mRNA 0.46 13 19052122 19060672
XM_026939139.2 False 2070 mRNA 0.46 13 19053410 19060672

Neighbor

gene id symbol gene type direction distance location
kif1aa kif1a,kif1aa,LOC108427666,LOC107593169 coding upstream 2372 18988003 ~ 19049750 (+)
atg4b atg4b coding upstream 94342 18951689 ~ 18957780 (+)
farp2 farp2 coding upstream 135116 18858439 ~ 18917006 (+)
LOC113527312 NA coding upstream 194960 18841437 ~ 18857162 (+)
dzip1l LOC108271535 coding upstream 437297 18600959 ~ 18614825 (+)
klhl30 klhl30,LOC107696751,LOC107753621,LOC107752665,LOC107694118 coding downstream 29212 19089884 ~ 19096027 (+)
crocc2 LOC108272137 coding downstream 37065 19097737 ~ 19152457 (+)
sned1 sned1,LOC106560635,LOC107753672,LOC107694110 coding downstream 93405 19154077 ~ 19196248 (+)
ryk ryk,LOC107752642,LOC107696766,LOC107694116 coding downstream 137129 19197801 ~ 19250494 (+)
slco2a1 slco2a1 coding downstream 200447 19261119 ~ 19283561 (+)
G29641 NA non-coding upstream 1079 19050824 ~ 19051043 (+)
G29640 NA non-coding upstream 1684 19050226 ~ 19050438 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding upstream 361115 18688653 ~ 18691007 (+)
LOC113530672 NA non-coding upstream 584802 18464884 ~ 18467320 (+)
LOC113536874 NA non-coding upstream 692087 18358202 ~ 18360035 (+)
G29656 NA non-coding downstream 131877 19192549 ~ 19195409 (+)
G29674 NA non-coding downstream 139643 19200315 ~ 19202099 (+)
G29792 NA non-coding downstream 198376 19259048 ~ 19259266 (+)
G29819 NA non-coding downstream 354933 19415605 ~ 19416908 (+)
LOC113533855 NA non-coding downstream 477313 19537985 ~ 19540117 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 103385 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 216401 18774770 ~ 18835721 (+)
trnai-aau NA other upstream 234647 18817402 ~ 18817475 (+)
tomm6 tomm6 other upstream 2651011 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 2869813 16181171 ~ 16182309 (+)
LOC113533886 espnl other downstream 425 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 473673 19534345 ~ 19537197 (+)
LOC113543059 c11h1orf146 other downstream 939374 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 1476301 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 1954166 21014838 ~ 21017867 (+)

Expression


Co-expression Network