ndufb5 (ndufb5,LOC107709185,LOC107659010,LOC107692354)


Basic Information

Item Value
gene id ndufb5
gene name ndufb5,LOC107709185,LOC107659010,LOC107692354
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20329443 ~ 20333691 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942739.2
AAGTTCTCGGTAAAGCACTGCCCAAAACAATCATGGCGGCGTTGAGCGTCCTGAGGGCTGCGGCGGCGTTTGCCGCCAGGATAAACCCCTTAAAACGGGCAAATCAGTCGTCAGATCTACTTTCCAGGGCAGTAGTGCGCTCAGAACAAGTTGCTGTCCGTTATGGAAGCCATGGGAAGAGAATGTTTGTCATCAAACCCACTGACTTTTATGACAGAAGATTTCTCAATTTACTGCAATATTACATCCTGCTCACTGGGATTCCCGTTGCAGCGTTTGTGAcatttgtgaatgttttcatCGGTGAGGCTGAATTGGCTGAAATCCCTGAGGGCTATGAGCCAGAGCATTGGGAGTACTATAAGCATCCCATTACTCGATGGATTGCCCGGAACATTTACGACAGCCCAGTGAAGGATTATGAGAAAATGATGGCACTTATCCAAATTGAGGCTGAGAAGGCTGAAATGAGACAAAAACAACTTGAGGTTCGGAAGCACATGAGAGCAAAAGGAGATGGACCCTGGTTTTATATTGATACAATTGATAAGAATCTAATTGACCAGAGCCCCAAAGCAACACCTGACAATTAAACCTGGAGGGACATCTGATGATCACCTCGAACCTGCCCGAACTATTGTCATTATACAATGTATAATGGATACTGATATTTGTGCAAATATATTTGTGTTCTTTTGCCACTGGCACCAATAAAGTGTAGAAGCCAAA

Function

symbol description
ndufb5 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Orthologous to human NDUFB5 (NADH:ubiquinone oxidoreductase subunit B5).

NR:

description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K03961 NDUFB5; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942739.2 True 729 mRNA 0.44 6 20329443 20333691

Neighbor

gene id symbol gene type direction distance location
actl6a actl6a coding upstream 4864 20315025 ~ 20324579 (+)
si:ch211-201h21.5 LOC108271508,LOC108427703 coding upstream 63950 20258821 ~ 20265493 (+)
zgc:172121 LOC108271828 coding upstream 79985 20245574 ~ 20249458 (+)
atp1b1a atp1b1 coding upstream 121690 20199525 ~ 20207753 (+)
rpl5b LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646 coding upstream 216924 20104204 ~ 20112519 (+)
usp13 usp13,LOC107659032 coding downstream 1940 20335631 ~ 20359651 (+)
pde6d pde6d coding downstream 133458 20467149 ~ 20472065 (+)
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding downstream 139580 20473271 ~ 20480074 (+)
ptmaa NA coding downstream 179098 20512789 ~ 20516555 (+)
meltf meltf coding downstream 325128 20658819 ~ 20671746 (+)
G30382 nme7,LOC107732015 non-coding upstream 94671 20233975 ~ 20234772 (+)
G30288 evi5 non-coding upstream 289469 20037735 ~ 20039974 (+)
G30224 NA non-coding upstream 411075 19918145 ~ 19918368 (+)
G30049 NA non-coding upstream 509072 19820142 ~ 19820371 (+)
G29999 NA non-coding upstream 763420 19565810 ~ 19566023 (+)
G30436 NA non-coding downstream 52 20333743 ~ 20334121 (+)
G30442 NA non-coding downstream 26899 20360590 ~ 20361838 (+)
G30445 pex5l non-coding downstream 34122 20367813 ~ 20368152 (+)
G30448 NA non-coding downstream 39015 20372706 ~ 20373062 (+)
G30455 NA non-coding downstream 47079 20380770 ~ 20380982 (+)
LOC113543059 c11h1orf146 other upstream 309217 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 792246 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1242232 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1380706 18932683 ~ 18948737 (+)
trnai-aau NA other upstream 1511968 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 203282 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 681147 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2263904 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3299915 23633606 ~ 23653555 (+)
G32684 NA other downstream 3686687 24020378 ~ 24021036 (+)

Expression


Co-expression Network