prelid3b (prelid3b,LOC107749404,LOC107556737,LOC103464385)


Basic Information

Item Value
gene id prelid3b
gene name prelid3b,LOC107749404,LOC107556737,LOC103464385
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4359120 ~ 4365171 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945430.2
GGTGGCGGTAATGGACCGGAAGCTGGTTTTGCAACCGCTATAAAGCCTCATAtgcagaagaagaagcagcactTGCCGGTCAAGTCTTCAGAGCCGATCACAAGACACGATGAAGATCTGGACGTCAGAACACGTTTTCAAcCACCCATGGGAGACAGTGACCAAAGCAGCTATGCAGAAGTACCCCAACCCCATGAACCCTAGTGTATTTGGAGTAGATGTGTTGGACCGAAGAGTGGACCAGCAAGGCCGGCTTCACAGCAAACGTCTACTCAGCACAGAATGGGGCCTTCCATCTATAGTCAATTCAaTCATTGGTAATGCACGTGCATGTACGTATGTTCAAGAGCATTCACTCGTGGACCCCAAAGAGAAGACTTTGGAGCTGAAGTCTACAAATATTACATTTACCAACATGGTGTCTGTAGATGAAAGGCTTGTCTACAAACCACATCCAGATGACCCATTAAAGACTGTGCTGACCCAGGAGGCCATCATCTCTGTGAAAGGAGTCAGTTTGAGCAGTTACCTAGAGGGACTTATGGCAAACACTATCTCAACTAATGCCGGAAAGGGCCGTGAAGCAATGGAGTGGGTTATCAGGCGTCTGAATGCAGAGATTGGGGAGCTAACCATTACAGCAAGAGGCACAATGCGGACACCCATGGCTGCAGCAGTCGTAGAAAAATGAACTTTTCGTGTCTCTGCGCTCTTTAACACCTTTCTTTGCGGACCACTTCAGTGTATCTTTTCTCGTTCTGTCCTACTTTCTATgctgttttttgcatttgtggaACAGAGTTCTCCCCATCTCCCTTGTACAATTGACTCTATATTAGAGGCTGGAGGGACACAAATCGGGAAGCGAATCTCTGCTTCATTTAATATTGAAAACAGCCTGTTTGCACTGAAGAACAAGCAAGATGTGGTTTTGAGTGTATTTAATAggtgattacacacatttacacttactCTGACgtttataactttataattGATCAGAgcaagcatatatatatatagtgtgtaacgagaaaacattttatttatttattttttatatatttccacCACAGAAATGCTAACTTGATGTGATAGCTGTTAGCTTTTATTCATTCTAATAAAGTTGGCATTTTTGTACACATGTACATTGAAGGTAATAA
>XM_034310026.1
AGCCTCATAtgcagaagaagaagcagcactTGCCGGTCAAGTCTTCAGAGCCGATCACAAGACACGATGAAGATCTGGACGTCAGAACACGTTTTCAAGTTAGTACTcCACCCATGGGAGACAGTGACCAAAGCAGCTATGCAGAAGTACCCCAACCCCATGAACCCTAGTGTATTTGGAGTAGATGTGTTGGACCGAAGAGTGGACCAGCAAGGCCGGCTTCACAGCAAACGTCTACTCAGCACAGAATGGGGCCTTCCATCTATAGTCAATTCAaTCATTGGTAATGCACGTGCATGTACGTATGTTCAAGAGCATTCACTCGTGGACCCCAAAGAGAAGACTTTGGAGCTGAAGTCTACAAATATTACATTTACCAACATGGTGTCTGTAGATGAAAGGCTTGTCTACAAACCACATCCAGATGACCCATTAAAGACTGTGCTGACCCAGGAGGCCATCATCTCTGTGAAAGGAGTCAGTTTGAGCAGTTACCTAGAGGGACTTATGGCAAACACTATCTCAACTAATGCCGGAAAGGGCCGTGAAGCAATGGAGTGGGTTATCAGGCGTCTGAATGCAGAGATTGGGGAGCTAACCATTACAGCAAGAGGCACAATGCGGACACCCATGGCTGCAGCAGTCGTAGAAAAATGAACTTTTCGTGTCTCTGCGCTCTTTAACACCTTTCTTTGCGGACCACTTCAGTGTATCTTTTCTCGTTCTGTCCTACTTTCTATgctgttttttgcatttgtggaACAGAGTTCTCCCCATCTCCCTTGTACAATTGACTCTATATTAGAGGCTGGAGGGACACAAATCGGGAAGCGAATCTCTGCTTCATTTAATATTGAAAACAGCCTGTTTGCACTGAAGAACAAGCAAGATGTGGTTTTGAGTGTATTTAATAggtgattacacacatttacacttactCTGACgtttataactttataattGATCAGAgcaagcatatatatatatagtgtgtaacgagaaaacattttatttatttattttttatatatttccacCACAGAAATGCTAACTTGATGTGATAGCTGTTAGCTTTTATTCATTCTAATAAAGTTGGCATTTTTGTACACATGTACATTGAAGGTAATAA

Function

symbol description
prelid3b Predicted to enable phosphatidic acid transfer activity. Predicted to be involved in phospholipid transport. Predicted to be active in mitochondrial intermembrane space. Is expressed in several structures, including alar plate midbrain region; intermediate cell mass of mesoderm; musculature system; optic vesicle; and ventral mesoderm. Orthologous to human PRELID3B (PRELI domain containing 3B).

NR:

description
PREDICTED: PRELI domain containing protein 3B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945430.2 True 1163 mRNA 0.43 6 4359120 4365171
XM_034310026.1 False 1129 mRNA 0.42 6 4359120 4365128

Neighbor

gene id symbol gene type direction distance location
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding downstream 319836 4034071 ~ 4039284 (-)
si:busm1-52i16.2 LOC108272376 coding downstream 333142 4023790 ~ 4025978 (-)
si:ch211-181l5.2 LOC108273231 coding downstream 350543 4004622 ~ 4008577 (-)
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding downstream 400301 3938000 ~ 3958819 (-)
tubb1 tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746 coding downstream 513396 3839963 ~ 3845724 (-)
LOC117596284 NA coding upstream 82196 4447367 ~ 4447479 (-)
LOC117596286 NA coding upstream 93165 4458336 ~ 4458447 (-)
LOC113545959 NA coding upstream 110681 4475852 ~ 4483914 (-)
igfbp2a LOC108273244,LOC108438161 coding upstream 225213 4590384 ~ 4618467 (-)
inha inha,LOC107586362 coding upstream 352239 4717410 ~ 4719627 (-)
G21486 NA non-coding downstream 4805 4354099 ~ 4354315 (-)
G21441 NA non-coding downstream 87091 4271809 ~ 4272029 (-)
LOC113545816 NA non-coding downstream 103758 4245757 ~ 4255362 (-)
G21413 NA non-coding downstream 114684 4169002 ~ 4244436 (-)
G21422 NA non-coding downstream 127025 4192003 ~ 4232095 (-)
G21546 NA non-coding upstream 62022 4427193 ~ 4429341 (-)
G21552 rabl3 non-coding upstream 77685 4442856 ~ 4443450 (-)
G21554 NA non-coding upstream 80632 4445803 ~ 4446215 (-)
G21555 NA non-coding upstream 85291 4450462 ~ 4450778 (-)
G21557 NA non-coding upstream 95760 4460931 ~ 4462016 (-)
trnaf-gaa_14 NA other downstream 26949 4332099 ~ 4332171 (-)
G21434 NA other downstream 102033 4256668 ~ 4257087 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 581132 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 622234 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 987966 3348308 ~ 3371154 (-)
obsl1a obsl1 other upstream 448104 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 746291 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 1040796 5405967 ~ 5414086 (-)
romo1 romo1,LOC102788570 other upstream 1166866 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 1591468 5956639 ~ 5965183 (-)

Expression


Co-expression Network