igfbp2a (LOC108273244,LOC108438161)


Basic Information

Item Value
gene id igfbp2a
gene name LOC108273244,LOC108438161
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4590384 ~ 4618467 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945449.2
GGGTCACTATTCAGTCAGTCCAAAATAACCAATACCTCAACATGCTATTCAtctaaaaatgctgttttcttttttacctCAGAGATTTGTGATTGTTTGTCACAGGGGAAATTCATGGCATGTAAGCGTGCAGAGAGTTGCGGGAGACAGAACCACTTGCCCGCAGAATGCGGGGGAAAAGTGCGCGTGTCTCCCGTGGCTGCTGTGCTCGCGCCCACAGCGACCGGGAGGAAACGAAGCCGCTTGCGCGCATTTTTGGATTGACCCAGATGCGCGCGCTCCCCTCAGGATGTGTTATGATGTCAGCGCTACATGAGCCCCGATTGGACACCGAGCAGAGCCCAAGTTGTTGTACCTCACCTGTCTGCGAGCGCGCTTCTGTCGCCACTTTTCTTTACCTGAAGCCGACGGAAGAGAGGTGCAAGAGACCCAGTTACAATGTCGTACGTGCTGctggagctgctgctgttggtggCGTTTGCGGACGCCGCGCGTGCCGAGCTCGTGTTCCGCTGCCCAAGCTGCAGCGCCGAGCGCCAGGCGGCATGTCCCGCTCTCACTGCCGAGAGCTGCGGCGAGATCGTGCGTGAGCCGGGCTGCGGCTGCTGCCCCGTATGTGCACGCCGGGCCGGAGAACTGTGTGGTGTGTACACACCGCGCTGCGCCAGCGGCCTTCGCTGTTACCCCGAGCCGGACTCAGAGCTGCCGCTCGAGCAGCTAGTGCGCGGCCTCGGTCGCTGCGCGCTCAAAGCGGACGCGGAGCCCAGCACAGGGAGCGCTGAACTGAGCGGTGAGGTTTTGGAGATTCCGGAAGCAGAACAAACTGAAGTCCCTCCGATCAGAAGGCCCACAAAGGACAGTCAGTGGATGGGCCCTAAAGAGAGTGCTGTCATCCATCACCGGCAGCAGATGAAGACAAAGATGAAGTATAAAGCAGAGGAACCCAAGGCATCACGCACCAAGCTGAGTCAGTGTCAGCAGGAGCTGGAGCAGGTACTTGAGAGGATCTCCAAAATGCCTTTCCGAGACAATCGTGGCCCTCTGGAGGACCTCTACTCTGTGCACATACCCAACTGCGACAAGAGGGGCCAGTACAACTTGAAACAGTGTAAGATGTCAGTGAATGGACACCGGGGTGAGTGCTGGTGTGTGAACCCCCACACAGGCAGACACATCCAGATCTCCCCAGTGGTGAGAGGTGACCCCAACTGCATTCAGTACATCAATGCCTTAGAGATGGAGCCACCTTCAGCATCGCAAAACTAAAAGTGTCAAAGAGAATCGATCCTGTGGGCCTCCAACTTCAAATCTGAGAACCACTCTAAAAATATTACATCTAGTAGGACCATATGCAGAAACACCGCTGCATTGTTGCAAAAATGTTACAAAGGATTGACCCATTTATATTACACCATACATGTAGATCAAAAGGACTCAGATGGTATAAAGGTCACTGAAGAAAAAGTCTGTACACTAGTACTGAAACATTTTGGTCATATCTTtggaaagaaaatgtaattacaaCTTTGTTAGTGATATTAATGGTGTCACATCCTTATTTCATCTGCTTTaagaatattttacatattcattctgttttctgaatgtacaagtaaaacaaaatgaataatgttCAGTATTTTAAGTATTTCATGGTGTCATTTGAAGGATGACATTAAAACTGGTATTAAACTCTGA

Function

NR:

description
PREDICTED: insulin-like growth factor-binding protein 2

GO:

id name namespace
GO:0043567 regulation of insulin-like growth factor receptor signaling pathway biological_process
GO:0007507 heart development biological_process
GO:0008156 negative regulation of DNA replication biological_process
GO:0001525 angiogenesis biological_process
GO:0001558 regulation of cell growth biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0048640 negative regulation of developmental growth biological_process
GO:0040015 negative regulation of multicellular organism growth biological_process
GO:0005576 extracellular region cellular_component
GO:0031994 insulin-like growth factor I binding molecular_function
GO:0031995 insulin-like growth factor II binding molecular_function

KEGG:

id description
K23575 IGFBP2; insulin-like growth factor-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945449.2 True 1698 mRNA 0.51 5 4590384 4618467

Neighbor

gene id symbol gene type direction distance location
LOC113545959 NA coding downstream 106470 4475852 ~ 4483914 (-)
LOC117596286 NA coding downstream 131937 4458336 ~ 4458447 (-)
LOC117596284 NA coding downstream 142905 4447367 ~ 4447479 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding downstream 225213 4359120 ~ 4365171 (-)
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding downstream 551100 4034071 ~ 4039284 (-)
inha inha,LOC107586362 coding upstream 98943 4717410 ~ 4719627 (-)
nufip1 nufip1 coding upstream 592029 5210496 ~ 5219287 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding upstream 646445 5264912 ~ 5324988 (-)
atg3 atg3,LOC107659953,LOC107752093,LOC107581307,LOC107551927,LOC107713119 coding upstream 727642 5346109 ~ 5393521 (-)
dtd1 dtd1 coding upstream 803735 5422202 ~ 5425120 (-)
LOC113545826 NA non-coding downstream 20712 4550571 ~ 4569672 (-)
G21592 NA non-coding downstream 43675 4540227 ~ 4546709 (-)
G21557 NA non-coding downstream 128368 4460931 ~ 4462016 (-)
G21555 NA non-coding downstream 139606 4450462 ~ 4450778 (-)
G21554 NA non-coding downstream 144169 4445803 ~ 4446215 (-)
G21693 NA non-coding upstream 81357 4699824 ~ 4700057 (-)
LOC113545947 NA non-coding upstream 145442 4763909 ~ 4765538 (-)
LOC113545964 NA non-coding upstream 156821 4775288 ~ 4777331 (-)
G21751 NA non-coding upstream 166366 4784833 ~ 4785735 (-)
G21810 NA non-coding upstream 208083 4826550 ~ 4826923 (-)
trnaf-gaa_14 NA other downstream 258213 4332099 ~ 4332171 (-)
G21434 NA other downstream 333297 4256668 ~ 4257087 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 812396 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 853498 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 1219230 3348308 ~ 3371154 (-)
obsl1a obsl1 other upstream 194808 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 492995 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 787500 5405967 ~ 5414086 (-)
romo1 romo1,LOC102788570 other upstream 913570 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 1338172 5956639 ~ 5965183 (-)

Expression


Co-expression Network