igfbp5a (LOC108273291)


Basic Information

Item Value
gene id igfbp5a
gene name LOC108273291
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4566734 ~ 4587196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945450.2
GCGCAGCTCGGCAGGACCCGCCTCTGGAGTCGGGGAGGTTTAAACGGAGTGCAGCGCGCCTCCCCTTCACCGAGCTGAACATGTGCTGAGCTCTTTGCATCCGAAAGTGGATTCTCGGAACTCTCCTGCTCATTGGTGTCATTTggaaaagaagcacagagatcaTCGCGTGGAGAGCAGCCAGCGTCTACGAAAGCCGCGTTTTCAGTTGATGAACTCCGGAATTTTTTCATTCAGGCGCGAGACGGAGCGCGAAGCTGCCGCAATCGTATCATTGGTGCATTTGTATTTGGATTCATCCAACGTTCCATAACGTTTAAACTGGACATTGTGAGACTGACGCATGATCCGTACTCCGAACTGATTCGATTCAGTCAATTTATTCCCCCCATCAGCTAACTGCTCCATGGGTGTGGAGGGGAGGAAGACACTATTTACCGCGTGCGCCTTGATCGCGCTCGTGCCCGCCTGTTTCACCTCCTACGTGCCGTGCGAGCCGTGCGATCTGAAGGCGCTGTCCATGTGTCCACCCGTACCCACAGGCTGCCAGGCGGTGAAGGAGCCGGGCTGCGGCTGCTGCTTCACCTGCGCGCTGCGGGAAGGACACGAGTGCGGCGTCTACACGGGCACGTGCGCCGCGGGTTTGCGCTGCCTACCGCGCGCTGGGGAGGAGAAGCCGCTGCATGCGCTGCTACACGGCAGGGGGGTGTGCATGAACGAGAAGGGCTACCAGCCGGCCCGGGATCAAGAGTCACTTCACCATTCCAAGGTGCTATTGTTTCCTCAAGACCACATCAACAACAAGAAGGTCCTGGCTGTTCATAAGGACAGGAAGCAGCTACAGTCCAAGCTCAGGACCATGGGCCATATGGACTACTCCCCTCTCAGCATAGAGAAGGGCCAGCCTGAAATGGGACTGTGTCGGAGGAAGCTGGACATAATTGTCCGGAGGATGAAGGACATGCCCAGAGTCATggctctgtctctctatctgcctaACTGTGACAAGAAAGGCTTCTTCAAGCGCAAACAGTGTAAACCCTCCAGGGGGCGGAAGCGAGGCATTTGCTGGTGTGTTGATAAATATGGTGCCATGATGCCGGGAACCAACTACAGTGGAGGCAACATCCAGTGTAGAGAGCCAGAGaacaacagcaataacaaaTGAAGAGTCTCTTTCTTGATAACAGGTCCCTTCTTCATCTTGCCATATTCTGTTAACTGCCAAATCACCTAAAGAATCTGTAaaagttaatatatatatataggcaaaGTTAGAAAACAGATTTAATTAATTGCACTAAGATAGTGCATATCATTAACAAACAATGGAATTATGGAATGATCAATTTTTCAGTACTAGAGCACTTTCAAGTTCTTTCAGAGCACTTTTCCATATAATCTTAAATATGTGGGTTTTTCTTAACTCTgtcaatgtacagtataaatgaTCAGTGCTATTATAGCAGTCCTTTTCCTTCCCAAAAATAACAGCTGTCACTGACTATAGAAAGTAAACTTATCAACTCAAAAA

Function

NR:

description
PREDICTED: insulin-like growth factor-binding protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945450.2 True 1534 mRNA 0.50 4 4566734 4587196

Neighbor

gene id symbol gene type direction distance location
LOC117599286 rabl3 coding upstream 123093 4442811 ~ 4443641 (+)
LOC113545914 NA coding upstream 141190 4392506 ~ 4425544 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding upstream 322297 4135052 ~ 4244437 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding upstream 438876 4112174 ~ 4127858 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding upstream 456411 4060891 ~ 4110323 (+)
stk11ip stk11ip,LOC107663072 coding downstream 63810 4651006 ~ 4692028 (+)
LOC113545978 NA coding downstream 72813 4660009 ~ 4660123 (+)
LOC113545806 NA coding downstream 121391 4708587 ~ 4717273 (+)
wbp4 wbp4 coding downstream 535524 5122720 ~ 5127596 (+)
LOC113530419 ccdc122 coding downstream 553205 5140401 ~ 5154427 (+)
G21577 NA non-coding upstream 40402 4525923 ~ 4526332 (+)
G21514 NA non-coding upstream 108888 4457272 ~ 4457846 (+)
LOC113545955 NA non-coding upstream 131998 4429407 ~ 4434736 (+)
G21475 NA non-coding upstream 225394 4341127 ~ 4341340 (+)
G21469 NA non-coding upstream 230098 4336254 ~ 4336636 (+)
G21629 NA non-coding downstream 71018 4658214 ~ 4663379 (+)
G21763 NA non-coding downstream 220927 4808123 ~ 4808427 (+)
G21771 NA non-coding downstream 243707 4830903 ~ 4834058 (+)
G21791 NA non-coding downstream 292013 4879209 ~ 4902000 (+)
LOC113545969 NA non-coding downstream 324607 4911803 ~ 4913793 (+)
trnah-gug_1 NA other upstream 214986 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 238874 4275073 ~ 4327860 (+)
LOC113545962 NA other upstream 824428 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 979091 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 988426 3550225 ~ 3578308 (+)
spega speg other downstream 167070 4754266 ~ 4759645 (+)
G21835 NA other downstream 500938 5088134 ~ 5088578 (+)
G21901 NA other downstream 621150 5208346 ~ 5208864 (+)
mych LOC108272607 other downstream 906526 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 914449 5501645 ~ 5503231 (+)

Expression


Co-expression Network