LOC113545865


Basic Information

Item Value
gene id LOC113545865
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3540809 ~ 3544535 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945492.2
AGacagtaacagtgtgtaacaaaGCAGGAGCTTTAATATCTTTCTGAAGTGGAGTTGGTGTGGAGATCTGGGAGTGTGAACTCAAGATGAagatcctcctcatcttcaCCCTCTGCCTGATCTCAGGGCTCACCATAGAGGACACTGGGACGTACCAGTGTGGAGTTGATAAAAATGAGAAAGACATTTACCCATCAGTGGAATGGAAGGTAAAGGAAGTTTCAGGGGGTTTGATCTCTAGAGAAGTGACTGCATATGCAGGGGGAGGAATCAACATCAAATGGAGATATGAGGATGAATATAAAGACAAACCAAAATCTTTCTGTAAGATCGGAACACAACAATGGTGTTTTAATCgaacagaaacaaaactaaacagtaAATGGTCACATGATGGCAGATTCGCAGTTCATGACAACAGAAGTGCAGGATTCTTCAATGTGTTTATCAGACAGCTGATTACGGAGGACACTGGAACATACGTGTGTGCTGTTGCTGTGTCTGATGAAATAAAGACCTGCACTGTAGTGAAGCTGAATGTAACAGAAGATCTGTCCTATGAGAAGTCCATCAGCAAGACTGTCCATGTAGGAGGAGATTTGAACTTCAGCTGTAAATACCCAGAATCCCTCAGTGGCAACAAGTTTCTCTGCAAGAGGCTGCAAACTGCTGCTTGTCCTCAAAAAACATCTGTTAAAGAAAGTAGGAAAGATGTAAATATGGGGAAGTTCTCCCTGTATGATGACAGTGCAGAAAAAATCTTCAATGTGAGTATTAGAAATGTAACTGAGCAGGACTCTGGGGAATACTGGTGTGGAGCCTCCTGGAAATCTGATGGATACAAGGTTTATTTCACACAGATCAACCTGACAGTTACTGAGCCACGTGTCTCAGGTTCAACCTCAAAACCAACACAacctttcatcatcatcatcatcaccgtcACCATCGttggcatcatcatcatcatcatcatctgaccTTATACAAGCTTCTCCTCCTGCAGGATTACCAGCTTCCACTGTGATCACTGTGTCTGtaattctgctgctgctgttcctgaTTGGAATCATATTGCTCACTTTGACTCTACAAAAGAGACATAAGATGCAAGGTACCcccacacacagaaaacacatgataaaatgtttaacaCGAACATGCAGGTGGGAGGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945492.2 True 1177 mRNA 0.43 5 3540809 3544535

Neighbor

gene id symbol gene type direction distance location
sema5bb LOC108271639,LOC108430840 coding upstream 25726 3448150 ~ 3515083 (+)
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding upstream 149240 3377514 ~ 3391569 (+)
gad1b gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324 coding upstream 202875 3297314 ~ 3337934 (+)
erich2 LOC108271660 coding upstream 246297 3283888 ~ 3294512 (+)
ssb ssb coding upstream 298836 3233539 ~ 3241973 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding downstream 44532 3589067 ~ 3613541 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding downstream 89561 3634096 ~ 3649254 (+)
aamp aamp,LOC107750832 coding downstream 122741 3667276 ~ 3681466 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding downstream 142086 3686621 ~ 3704908 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding downstream 310425 3854960 ~ 3920608 (+)
LOC117599318 NA non-coding upstream 158213 3379891 ~ 3382596 (+)
G20868 NA non-coding upstream 187124 3331762 ~ 3353685 (+)
LOC113545973 NA non-coding upstream 322098 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 329878 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 388295 3152314 ~ 3152514 (+)
G21136 NA non-coding downstream 104796 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 109216 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 122210 3666745 ~ 3666972 (+)
G21178 NA non-coding downstream 137446 3681981 ~ 3682254 (+)
G21197 NA non-coding downstream 168772 3713307 ~ 3714991 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 173522 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 347348 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 476782 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 550328 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 551934 2988803 ~ 2988875 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 5690 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 35213 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 184117 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 730538 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 807142 4351677 ~ 4351748 (+)

Expression


Co-expression Network