nelfcd (nelfcd,LOC107685805,LOC107554192,LOC107666106)


Basic Information

Item Value
gene id nelfcd
gene name nelfcd,LOC107685805,LOC107554192,LOC107666106
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3686621 ~ 3704908 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945525.2
AAAATGTCGTCATATGACGTAATACATGTGCGCCAACTGTTTAGAGTTTTGCATGATTGTAAAGGCAACAAGCTATAAAACAAGTTAGGTGCTTTGCTGTACGAGTGACACTTAATTATGGATGAAGAATACTATAGCGGTGCTGGAGAGTGGGATGGGCAAGAAGCTAATGTGGAAGAAGACGGCTACGCGGATACAGAGGGAGATGATAAAGTACAAGAGGAATGCTTGCAGAAGTTCTCCAGTAGGGACTACATCATGGAGCCCACAGTGTTTAACACGCTGAAAACCTATTTCCAGGCAGGTGGTTCTCCTGAGCACGTTATTCAACTCCTGTCGGAGAATTATTCTGCTGTGGCCCAAACAGTGAACCTGCTGGCTGAGTGGCTCATTCAGATGGGTGTGGAGCCAGCTCAGGTGCAGGAACGAGTAGAGAACCATCTGAAGAGCCTCCTCATCAAACACTTTGACCCACAAAAAGCTGACTCTATTTTCACAGTAGAAGGAGAGACACCAGCATGGCTAGAGCAGATGATTGCTCACACTACGTGGAGAGATCTCTTTTACAAACTAGCTGAAGCTCATCCAGACTGCCTGATGCTCAACTTCACAGTCAAGCTGATCTCAGATGCAGGATACCAAGGGGAGATCACAAGCGTGTCTACAGCCTGTCAGCAGCTGGAAGTTTTCTCCCGAGTGTTACGTACCTCGCTCTCCACACTGCTTGATGGGGGAGAACAAAACCTAGAGAAAAACCTACCCGAGTTTGCTAAGATGGTGTGTCACGGTGAGCACACGTACCTTTTTGCTCAGGCCATGATGTCCATTCTGGCACAGGAGGAGCAGGGCGGATCGGTTGTGCGTCGCATTGGGCAAGAAGTGCAGAAGTTTGCCCTTCAGAGTGGTCATGATGCAAGTCAGATAACACTGGCACTAGGGACAGCGGCGGCGTACCCACGTGCCTGTCAGGCACTTGGTGCAATGCTCTCCAAAGGGGCACTTAATCCTGCAGATATCACAGTTCTTTTCAAGATGTTCAGCAGCATGGACCCTCCGCCCGTAGAACTGATCCGTGTTCCAGCCTTCCTGGATCTGTTCATGCAGTCTTTGTTTAAACCTGGAGCCAAGATAAACCAGgatcacaaacacaaatatattcaCATTCTGGCCTATGCAGCCAGTGTGGTGGAGACGTGGAAGAAGAACAAGCGTGTAAATATCAATAAGGATGAGCTGAAGTCCACCTCCAAAGCCATTGAGACTGTTCATAATCTGTGCTGTAATGAGAATAAAGGAGCTACAGAGCTAGTGGCAGAACTCAGCACTCTGTACCAGTGCATCAGGTTTCCAGTAGTAGCAATGGGGGTGTTAAAGTGGGTCGACTGGACTGTGTCAGAACCTCGTTACTTTCAGCTGCAGACAGATCACACCCCCATCCATTTGGCCTTATTGGATGAGatCAGTACATGCCATCAACTCCTACACCCGCAGGTGCTGCAGCTGCTTGTCAAACTCTTTGAAACAGAACATTCCCAACTTGACGTCATGGAACAGCTGGAGCTGAAGAAGACTTTGCTTGACCGCATGGTTCACCTATTAAGTCGAGGCTATGTTCTGCCTGTTGTCAGCTACATGCGTAAATGCCTGGAGAAACTCAATACAGACATCTCGCTCATCAGATATTTTGTAACTGAGGTTCTGGACGTGATCACTCCACCATACACCTCTGACTTTGTTCAGCTCTTTTTACCAATCCTGGAGAACGACAGTATAGCTGGAACCATCCGCACTGAAGGGGAGCATGATCCTGTGACTGAATTCATTGCACACTGCAAATCCAATTTCATCATGATAAACTGAGACCAGCCAACACTTCTAACCTGCAGAAACTTTGCAGTTGTTTTAATCCAAGAAGACCAGGATCGTAATGTCCAATCAAGAGGCCAGTGAAAGCTCAAGCATCAACATACGCAGTTTAGAATAAAAGAGCTATATGCATTCAATCTCAGCACAGCAATTACTTTAGTATGgtcaccattttcttttcagatcCTAATGAAGACTTGTGGATAGTAGAGCTGATGTTAAACCAGGTGTTTTAGCCAGGACATTTGTAAAACACTTAAATGTAGGTTATTTTAAaagttagcattttttttattgaaatgtgCTTTGTAGCAAGAATCCATTGTGACCATTTTGATCAtcccttttctttttgtatgatatttttctttcagtaaaaaaaaggaaactgacATCCTCTGGTTGCTGTGAAGTGACGAGATTATCATTAGCAAAAAAGCAAAACCCAGACTCAAAATAATTCAAAGATTTATTTAAGATGAAGTAAAAGGTGGAAGCTAAAACATAATGGGtgtcaaggggaaaaaaaacttgtataAACAGTTTAGTGCATTTTTATTCAATTCACTTTTCAGGACCATGTTGAACATGCAGTGTTCTATGGTCAATAAatcaaatggttaaaaaaaaaaaaaa

Function

symbol description
nelfcd Predicted to enable RNA binding activity. Predicted to be involved in negative regulation of transcription elongation from RNA polymerase II promoter. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFCD (negative elongation factor complex member C/D).

NR:

description
Negative elongation factor D

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15181 TH1L, NELFD; negative elongation factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945525.2 True 2502 mRNA 0.44 15 3686621 3704908

Neighbor

gene id symbol gene type direction distance location
aamp aamp,LOC107750832 coding upstream 5155 3667276 ~ 3681466 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding upstream 37367 3634096 ~ 3649254 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding upstream 73080 3589067 ~ 3613541 (+)
LOC113545865 NA coding upstream 142086 3540809 ~ 3544535 (+)
sema5bb LOC108271639,LOC108430840 coding upstream 171538 3448150 ~ 3515083 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding downstream 150052 3854960 ~ 3920608 (+)
dzip1 NA coding downstream 264877 3969785 ~ 4005335 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 355983 4060891 ~ 4110323 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding downstream 407266 4112174 ~ 4127858 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding downstream 430144 4135052 ~ 4244437 (+)
G21178 NA non-coding upstream 4367 3681981 ~ 3682254 (+)
G21168 NA non-coding upstream 19649 3666745 ~ 3666972 (+)
G21138 NA non-coding upstream 32654 3653751 ~ 3653967 (+)
G21136 NA non-coding upstream 34643 3649331 ~ 3651978 (+)
LOC117599318 NA non-coding upstream 304025 3379891 ~ 3382596 (+)
G21197 NA non-coding downstream 8399 3713307 ~ 3714991 (+)
G21203 NA non-coding downstream 27009 3731917 ~ 3733093 (+)
G21212 NA non-coding downstream 45125 3750033 ~ 3758428 (+)
LOC113545823 NA non-coding downstream 124681 3829589 ~ 3836969 (+)
LOC113545954 NA non-coding downstream 141705 3846613 ~ 3848899 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 98978 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 108313 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 319334 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 493160 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 622594 3053331 ~ 3064027 (+)
LOC113545962 NA other downstream 23744 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 570165 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 646769 4351677 ~ 4351748 (+)
spega speg other downstream 1049358 4754266 ~ 4759645 (+)
G21835 NA other downstream 1383226 5088134 ~ 5088578 (+)

Expression


Co-expression Network