rab22a (rab22a,LOC107554197,LOC106517659,LOC108231697)


Basic Information

Item Value
gene id rab22a
gene name rab22a,LOC107554197,LOC106517659,LOC108231697
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3750018 ~ 3777988 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945529.2
gtGACACACCCGCTCTTCAAGATGGTGGTCACTGTATTGCTGTGTCTGCAAGACGAGCTAGTCACGAAACTATTTAAGATTTGAGCGTTAACATTTGCCAGTTTGCTTTTCGTTTAGTTAATCAAACGTTTTGGGTGCCAGGGTATCTCTCAATACGAGATatatattgtcatatttgtTGGAGAAGAGTCGCGTTTTGAAGTATGTGGGTCGTCTGCTGGACAGATAGCTATAGCTTACGTCAAAACATGGCAGTAGTTAGTGACGACTTTTATGAAACAGTCTGGGATGTTTAGGAGCGTTTTCTTGGTTTGAGGGATCAAAATGTCGCTCAGAGAGCTGAAAGTGTGCTTGCTTGGGGACACTGGGGTTGGGAAGTCAAGTATTGTGTGCAGATTTGTAGAGGACAGCTTTGATCCCAACATTAATCCTACAATTGGTGCATCATTTATGACGAAGACAGTACAGTACCAAAATGAGCTCCATAAGTTTCTTATTTGGGACACAGCAGGACAAGAAAGgTTTCGTGCCCTTGCCCCTATGTACTACAGAGGCTCAGCTGCAGCAATCATTGTTTATGACATTACAAAAGAGgagTCCTTTCTAACTTTGAAGAACTGGGTAAAAGAGCTCCGTCAACATGGACCGCCCAACATAGTGGTGGCCATTGCTGGCAACAAATGTGATCTCTCTGATGCCAGGGAGGTACTGGAGAAGGATGCCAAGGACTATGCTGACTCTATCCATGCTATTTTTGTTGAAACTAGTGCCAAAAATGCTATTAACGTCAATGAAATCTTCACTGAGATAAgTCAGAAGATTCCACTTTTAGACACGAGTGACTCAGGTGTGAGGGGCTTGAAACTGCGACGTGATCAATCAGACGTAACCAGGGAACGCACTTGCTGCTAATGCACAATTAGGCCAAATCTATTTCTACCTTCTTTCACCTCTTCATTACTAAGAAACAGAATGGATAACAGTGAAATTATAATAGGAGCACAGGATCTTAATGACATCACCACCTTGGAATCTTCCTCAGTCTAAACCCCAAACAGAGCCCTTtgtaggaaaaaagaaaaaaaattctgcccATTGCATTGCTCTCTGGAGTTCTTGTTACAAAGGAAACTGCTACTCTTATGACTGTTTGTCTGTGGCTAACTAAAGTGGAATAGACTTCGGTATACCAGCTCTGGTCTCTCAGACCTCAAGtcactttgtgtttattttttgtaaatcttaaaacatctaaaaggaaaaagaaaaaagacactgGTTTTATTCCTGttgagaaaacaaaatgttgcTCTGGATCTCTGTTCCTCCATAACCTATATCAATACATCTTTGTGTGCATACTTGAGGCTCACATGGTTTCCTTTTTAGATTTTATGATAAGGTAAGTTTTCTGACTGATTGTGGATCAGAAGTAACTAAGCAAATTgtacaaaaaagaaattaatctaTCTACTTTAAGACTATGGACCAACATTTATCTGAAGAAGTGTTGCTGATGTTTTTTCTTGTGGTAGAATCATTTTGGGCTTTTTGGaatccttttttcctttcagcttGCATCAAGAGAATTCAATGGCCTGATCCAACAGTATGATTTACACAGTGAATACGCTCCATTTCATATAGTTCCAAATTGGTTCCATGGTTAAATGTGTCACTAGTAGAATCAGTTGTTGATCATTTTTAGTGTTGTGGTAGTCTTTTTTAGTGTTATGTTAGTCTTGAATTGACTGAAGTCCACCATTTAAGTCACACATCCCCAATCCTGGTCCTGGTCAGAGGGAGTACCGTCTGTCATTTTAGTATTTTCTCtactcccaacacacctgattcaactaatcagctaattaacagcccttcctaagttgaagtgggtgtgttagaggagGGAAACTCTAAATTGTGCAGGACAGAGGGTACTCCAGAGCCAGGGTGATTTAACAcatttctaattaattaatctatttCTAATAAATCACATTCACTTCTTTCTAATTCCACAGAGTTTCTGCTAGGAAGTTTTGGTGCCCTGTTTGGTGTCTGGGAATGTTGCAGTTTACCAGATAAATCAGTATAATTCTGGTCGTATGTTAACTACTACTGCTgcaagaaaacactgaaattttggGCTATACAAAAATGACACCATGaagtaaaattaacatttaattaactttttttttttttacacacagtcaatatgtaaataaacatatataaaatagtgAACGGGCCTTTGAAAGCAACAAACAGCCGAGAACAagaaaacacactaacaaaaaatattactttaagaCACGGctgctaataacattttatttagctttactTTAACTCGATTGAAATGTGTTTAAAGAAGCACCCAAACCTTTCAACGCATATTCTCAAATGTATGACATTTCTGCTTATTTATAGCTGGACCAGCGTTATAAGTCTCTGACCTGAACATGTTCCACACTGTCTTGATTAGGCTGATAAGAATCGCTTGCTTTtaggaagaaactttgaaaaGTCGACTGTTTTGCAATTGTCTGTATTAACTGTGTGATTGTACAGTGACCATTTACTGGTCGGTCTCGATATCAGCCACCTTGAGTTCCACAAGGAAAAGGAAGTTTCAACTTTGAAATTTGAATTGAGTAAAGTAGTATCTGGCTGGGTAAGAGGAAATTTTAATTGTGACTGTGACAGGAATCTTTCTGAAGATTCTGTGACTGAATAACGTATCTGGATTTTCTGTGCACGTCAGCAGCAAGTTCCACCTATAAGAACATCCAGAGTTTCCATCCCTCAAACAAACCCCCAATGACAAGATTTGTACTTTGCTATCTGTCTAATTTTCTCAGATAAAATGGATATTAAAAATGCTTGGTAACCATTTAGCAAACTACATGAATCCCAATTTAATTCCTGTCTTGTCTTTtgaacacaaacactgcagctATGATGTGCTAGAAAACAACGATTCTACAGCAGTGGCTAGCAGCAGGTAGATACGcaaccaccagcagcagcacgCTTAAACAGCTACATGTAAACAGtgcctttttttccttcagcatATTGTCTATGTTCATTTAAAGTGCCATGCATTACTGAATAAAAGGAGGTGTagaaaata
>XR_004579840.1
gtGACACACCCGCTCTTCAAGATGGTGGTCACTGTATTGCTGTGTCTGCAAGACGAGCTAGTCACGAAACTATTTAAGATTTGAGCGTTAACATTTGCCAGTTTGCTTTTCGTTTAGTTAATCAAACGTTTTGGGTGCCAGGGTATCTCTCAATACGAGATatatattgtcatatttgtTGGAGAAGAGTCGCGTTTTGAAGTATGTGGGTCGTCTGCTGGACAGATAGCTATAGCTTACGTCAAAACATGGCAGTAGTTAGTGACGACTTTTATGAAACAGTCTGGGATGTTTAGGAGCGTTTTCTTGGTTTGAGGGATCAAAATGTCGCTCAGAGAGCTGAAAGTGTGCTTGCTTGGGGACACTGGGGTTGGGAAGTCAAGTATTGTGTGCAGATTTGTAGAGGACAGCTTTGATCCCAACATTAATCCTACAATTGGTGCATCATTTATGACGAAGACAGTACAGTACCAAAATGAGCTCCATAAGTTTCTTATTTGGGACACAGCAGGACAAGAAAGgTTTCGTGCCCTTGCCCCTATGTACTACAGAGGCTCAGCTGCAGCAATCATTGTTTATGACATTACAAAAGAGgagTCCTTTCTAACTTTGAAGAACTGGGTAAAAGAGCTCCGTCAACATGGACCGCCCAACATAGTGGTGGCCATTGCTGGCAACAAATGTGATCTCTCTGATGCCAGGCAGAGCCAAAGAGCCTACTGGGACAGAATGCCCCTGCTTGTGAACCTGAGATGTCTGGCAAGACCTTCGTTTCCACTGGTGGTCACTAGTCATGCTGGTGGTATAAAACACTTCCCCAAGCAGATCTGCTGTCCCAAATGGATGGCACATTTGGCACCCCCAGCCAGGTCAACTCTGTCTGTGGGTCTGGCTCCTCGTGCTGAAACATCAACTGAGGACTGCAACTTGGGAGGTACTGGAGAAGGATGCCAAGGACTATGCTGACTCTATCCATGCTATTTTTGTTGAAACTAGTGCCAAAAATGCTATTAACGTCAATGAAATCTTCACTGAGATAAgTCAGAAGATTCCACTTTTAGACACGAGTGACTCAGGTGTGAGGGGCTTGAAACTGCGACGTGATCAATCAGACGTAACCAGGGAACGCACTTGCTGCTAATGCACAATTAGGCCAAATCTATTTCTACCTTCTTTCACCTCTTCATTACTAAGAAACAGAATGGATAACAGTGAAATTATAATAGGAGCACAGGATCTTAATGACATCACCACCTTGGAATCTTCCTCAGTCTAAACCCCAAACAGAGCCCTTtgtaggaaaaaagaaaaaaaattctgcccATTGCATTGCTCTCTGGAGTTCTTGTTACAAAGGAAACTGCTACTCTTATGACTGTTTGTCTGTGGCTAACTAAAGTGGAATAGACTTCGGTATACCAGCTCTGGTCTCTCAGACCTCAAGtcactttgtgtttattttttgtaaatcttaaaacatctaaaaggaaaaagaaaaaagacactgGTTTTATTCCTGttgagaaaacaaaatgttgcTCTGGATCTCTGTTCCTCCATAACCTATATCAATACATCTTTGTGTGCATACTTGAGGCTCACATGGTTTCCTTTTTAGATTTTATGATAAGGTAAGTTTTCTGACTGATTGTGGATCAGAAGTAACTAAGCAAATTgtacaaaaaagaaattaatctaTCTACTTTAAGACTATGGACCAACATTTATCTGAAGAAGTGTTGCTGATGTTTTTTCTTGTGGTAGAATCATTTTGGGCTTTTTGGaatccttttttcctttcagcttGCATCAAGAGAATTCAATGGCCTGATCCAACAGTATGATTTACACAGTGAATACGCTCCATTTCATATAGTTCCAAATTGGTTCCATGGTTAAATGTGTCACTAGTAGAATCAGTTGTTGATCATTTTTAGTGTTGTGGTAGTCTTTTTTAGTGTTATGTTAGTCTTGAATTGACTGAAGTCCACCATTTAAGTCACACATCCCCAATCCTGGTCCTGGTCAGAGGGAGTACCGTCTGTCATTTTAGTATTTTCTCtactcccaacacacctgattcaactaatcagctaattaacagcccttcctaagttgaagtgggtgtgttagaggagGGAAACTCTAAATTGTGCAGGACAGAGGGTACTCCAGAGCCAGGGTGATTTAACAcatttctaattaattaatctatttCTAATAAATCACATTCACTTCTTTCTAATTCCACAGAGTTTCTGCTAGGAAGTTTTGGTGCCCTGTTTGGTGTCTGGGAATGTTGCAGTTTACCAGATAAATCAGTATAATTCTGGTCGTATGTTAACTACTACTGCTgcaagaaaacactgaaattttggGCTATACAAAAATGACACCATGaagtaaaattaacatttaattaactttttttttttttacacacagtcaatatgtaaataaacatatataaaatagtgAACGGGCCTTTGAAAGCAACAAACAGCCGAGAACAagaaaacacactaacaaaaaatattactttaagaCACGGctgctaataacattttatttagctttactTTAACTCGATTGAAATGTGTTTAAAGAAGCACCCAAACCTTTCAACGCATATTCTCAAATGTATGACATTTCTGCTTATTTATAGCTGGACCAGCGTTATAAGTCTCTGACCTGAACATGTTCCACACTGTCTTGATTAGGCTGATAAGAATCGCTTGCTTTtaggaagaaactttgaaaaGTCGACTGTTTTGCAATTGTCTGTATTAACTGTGTGATTGTACAGTGACCATTTACTGGTCGGTCTCGATATCAGCCACCTTGAGTTCCACAAGGAAAAGGAAGTTTCAACTTTGAAATTTGAATTGAGTAAAGTAGTATCTGGCTGGGTAAGAGGAAATTTTAATTGTGACTGTGACAGGAATCTTTCTGAAGATTCTGTGACTGAATAACGTATCTGGATTTTCTGTGCACGTCAGCAGCAAGTTCCACCTATAAGAACATCCAGAGTTTCCATCCCTCAAACAAACCCCCAATGACAAGATTTGTACTTTGCTATCTGTCTAATTTTCTCAGATAAAATGGATATTAAAAATGCTTGGTAACCATTTAGCAAACTACATGAATCCCAATTTAATTCCTGTCTTGTCTTTtgaacacaaacactgcagctATGATGTGCTAGAAAACAACGATTCTACAGCAGTGGCTAGCAGCAGGTAGATACGcaaccaccagcagcagcacgCTTAAACAGCTACATGTAAACAGtgcctttttttccttcagcatATTGTCTATGTTCATTTAAAGTGCCATGCATTACTGAATAAAAGGAGGTGTagaaaata

Function

symbol description
rab22a Predicted to enable GTPase activity. Predicted to be involved in endocytosis and intracellular protein transport. Predicted to be active in early endosome. Orthologous to human RAB22A (RAB22A, member RAS oncogene family).

NR:

description
Ras-related protein Rab-22A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945529.2 False 3142 mRNA 0.38 7 3750018 3777988
XR_004579840.1 True 3371 misc_RNA 0.39 8 3750018 3777988

Neighbor

gene id symbol gene type direction distance location
ctsz ctsz,LOC107729770,LOC107596856,LOC107708086,LOC107666025 coding downstream 38261 3704874 ~ 3711757 (-)
LOC113545819 LOC108271666 coding downstream 211997 3530784 ~ 3538021 (-)
unc50 unc50,LOC107672653,LOC107686789,LOC107746628 coding downstream 314807 3427322 ~ 3435211 (-)
slc25a12 slc25a12,LOC108271646,LOC108430860,LOC107686753,LOC107582326 coding downstream 334616 3393976 ~ 3415402 (-)
tatdn2 tatdn2,LOC107667383,LOC107582679,LOC107748398,LOC107585107 coding downstream 697741 3044007 ~ 3052277 (-)
vapb vapb,LOC101078863 coding upstream 10482 3788470 ~ 3805609 (-)
LOC113545812 LOC107667744,LOC107582924 coding upstream 39529 3817517 ~ 3823283 (-)
tubb1 tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746 coding upstream 61975 3839963 ~ 3845724 (-)
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding upstream 160012 3938000 ~ 3958819 (-)
si:ch211-181l5.2 LOC108273231 coding upstream 226634 4004622 ~ 4008577 (-)
G21303 NA non-coding downstream 34975 3713299 ~ 3715043 (-)
G21153 NA non-coding downstream 93346 3656395 ~ 3656672 (-)
LOC117599952 LOC108271653,LOC108271638,LOC108271644,LOC108271652 non-coding downstream 198067 3549631 ~ 3551951 (-)
G21031 gorasp2,LOC107709057 non-coding downstream 403883 3344474 ~ 3346135 (-)
G20991 NA non-coding downstream 539087 3210509 ~ 3210931 (-)
G21306 NA non-coding upstream 7152 3785140 ~ 3785554 (-)
G21358 NA non-coding upstream 154148 3932136 ~ 3932568 (-)
G21377 NA non-coding upstream 215891 3993879 ~ 3999636 (-)
G21382 NA non-coding upstream 231143 4009131 ~ 4009340 (-)
LOC113545971 NA non-coding upstream 266576 4044564 ~ 4062409 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 13132 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 378864 3348308 ~ 3371154 (-)
LOC113545802 NA other downstream 1116338 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 1927350 1756160 ~ 1822668 (-)
slc48a1b LOC108271834,LOC107585148,LOC108441111,LOC107733581,LOC107711080,LOC103044934,LOC107685336 other downstream 2712422 1028827 ~ 1037596 (-)
G21434 NA other upstream 478680 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 554111 4332099 ~ 4332171 (-)
obsl1a obsl1 other upstream 1035287 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 1333474 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 1627979 5405967 ~ 5414086 (-)

Expression


Co-expression Network