gnas (gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173)


Basic Information

Item Value
gene id gnas
gene name gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3854960 ~ 3920608 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945572.2
GCGCCTTCGGTCCGCAGAAGCCCCACTTGCTGACGTTTTGTGAATGTCATGTGATTAGCCGCGGTCCGTATACAGGGTTCAATGAGAGCTGTTTGCCCCACCCATCTCTTCAGCGCTATCTAGCTCAATGTACGATTCAGTGAGAAAGGGGAAAAATCGGCAAAAAATACTCTCGGAGAGCGGATCCGATCGCGTCCATCCGAGAAGTGACACGTTCCGTCCGCCAAGAGCTTACTGTCACTGCGGTATTTGTCTTTTTACACACGGGTTCTCGTCGCGGCTCTAAATGCACATGTATAACCCCGTCTTTCTGCAAAGGCGAATTCAAAACGGGTGAAAGAAAAGCGTAGCCTGACGGCGGACCCTGCCTGCGAAATGCGGTGAAAAATACCGAAGAATTGCGTTGATCGGAGCAGCTGCGTGAGCCGCGTGCGCCGTTAGGAAGCCATACGGATTGTTGTTTGCGTGAAGCGAGTCTACGGATGTGAGGAGAAATTCAAATTACAGCAGCAAACcgagaagacaaaaaaaagcgcCTCTTTTGATTTGAATAGCCACAAAAGCCATCGGTTATCATTTACAGAACAAGAGGAAAATATACAGTTACATgtgggatttcttttttttttattaaaagaaaaaaagctttctaTCTTTTGACACATCATTTCATAGcggagtttaaaaaaaggttcatGTCGGCCACGGCTCGAGGCGGAATGAACCGCAGGCCGTCCGTTTGGGGAAGATATTTATCTCTTCAggtctttttttaaacccttcCTCTATCCCTTTTCCCCGTGTTAGCGTGTCGGTGAACGGATGtgacaggaaaagaaaagaaaccccGTTTTCGTAGATGATTTTGCGAGGAGTGCCGGCCGCGACTGTCATTTTGGGGAAGCGACTATGGATTGTCGACGAGAAATTTGTTAAATCGCCTTCGGATTTCTGGAACAGCAAGACAAAGACCTTCATGTAACGCCGTGgaggcatacacacacatatatacacacacacataacacacacagacagacacacacatacacatacacatccaaCGCGAAGTGTAAAACTCCCGCTCGGATATTACTGCACCAAAAAAGCTCAGGAGGACTCGGCCTTGTGTGTAGGCAGGCCTTGGTGTTTTCACCACCATCACAAGCCCTCCGTTTCTTGCCTAAAGCTCCTACTGAGCACTCACCCAAAGGCATAGCTTTCATATTGCTTCACCCCTTCATCCCTTTAAACGACTGaccccatccatccatctatccatccatccatcccagtGTGCTGTTCTTCCAGGGAGTGTGCATATGCACAGAGAAATGTCACAATTCCCAATCCTTGGGATTTGAACACGTGCCAAGGAATCAAGGAATTTTTTGGCtgtctgatactgatactgtacaTTCATCCCCCCTACCATCCacaaaaaacatttccttttcGTATTGGGACGTTGGGAAGATGGGTTGTTTGGGCAACAGTAAAACAGAAGACCAGCGTAATGAGGAGAAGGCCCAGAGAGAAGCAAACAAAAAGATAGAGAAACAGttacagaaagacaaacagatatACAGAGCGACCCATCGGCTACTACTGTTAgGAGCTGGAGAATCGGGCAAAAGCACTATAGTCAAACAGATGCGCATTTTACATGTCAATGGCTTCAATGCTGAggagaaaaaacagaaaattcagGATATTaagaataatataaaagaaGCTATAGAGACTATTGTGACTGCAATGAACAGTTTGGTACCTCCAGTTCAGTTAGCCTGTCCAGCAAACCAGTTTCGAATCGAGTACATCCTCAATTTAACCAATCAAAAAGACTTTGAATTCACCCCGGAATTTTATGAACACACAAAGACTCTGTGGCACGACGAGGGAGTAAGAGCCTGCTTTGAGAGATCCAATGAGTATCAGCTGATTGACTGTGCTCAGTACTTCCTAGATAAGATTGACACTATAAAGCAAAGTGACTACACGCCTACTGATCAGGATTTGTTGAGGTGCAGAGTGCTGACCTCAGGGATCTTTGAGACGAGGTTCCAAGTGGACAAAGTTAATTTTCACATGTTTGATGTTGGTGGTCAAAGAGATGAACGAAGGAAATGGATCCAGTGTTTTAAtgATGTGACTGCCATTATATTTGTGGTGGCCAGCAGCAGCTACAATATGGTCATCCGAGAAGACAATCAAACCAACCGTCTCCAGGAGGCATTGAACCTGTTCAAGAACATATGGAACAATAGATGGCTTCGAACCATTTCTGTTATTCTTTTCCTAAATAAGCAAGACCTACTAGCCGAGAAGGTTCTGGCGGGAAAATCGAAAATAGAGGAGTATTTCCCGGAGTTTTCACGCTACACAACACCAGATGATGCTACACCTGAACTGGGGGAAGACCCACGAGTTACAAGAGCAAAATATTTCATCCGGGATGAGTTCCTGAGGATCAGTACAGCAAGTGGGGACGGTCGCCACTACTGCTATCCACACTTCACTTGTGCTGTGGACACAGAAAACATCCGCCGGGTGTTCAATGACTGCCGTGACATCATCCAGCGCATGCATCTCCGGCAATATGAGCTCTTGTGATTGCCACAGCACCGCTGGAACCCAGTCTAGAACTTTCTACAGGCTTCCTGTCCTACTCATGCCCCAAAAATGCAACCATGAAACTTACTATTTATGAGTTTCCAGGACACACAGCAACATatgagacacacaaacacaggcttTCTCCATCCTGAGATCGCTGAGGGGCAAGGAGAATACTGTATCGGTAATGAACAAGGGTGACTGTGCAATCCAGAAAAAGACAATATAGCCAATGACCACCAATGTTAAAAGAGAAAGCGTGTgaatacatacacatatgctgagagagaaaggaaaaaataaatgtttgaccGGGACTGCCGAATATCTGCACACTTGTCGAGGCTCTGCTCAGGATGAGGAAGATATTTATATGGCATTCACAAAGACACACGTGTACAATTCTGCTCCACTCCCTCTGTCCTATGTATGTTAAACATTAGCCATGTGTTTCTAATGATGTACttaccacacacatgcacaccactATTGTGAAACTCCACTCTTTGCCTGAGTGAGCCTGTTGTCTCCCCTCTTCTCTCAAAATGGACTAACCCATGGAGAAGAGAAAATGATGGACTGATGCAAAGACATGGTGAAAGAATGTAGACCTTTATGGTTTGCTTGAAAGGATAAAAAGGGGGTAGAATTATGGAGTATTTTCAGCCCCGGGTTGCTGTGCTAGCAGAGCGGAGAATGACTCAAACACAAGACCCATCACATGATTCTTTTCTCCAAATGCAACAAGGAGAAATAGTGAGAACATACAATGCATAGATTCATGCAGAACAGCCAattacagtgcaaaaaaatttatatgtgcgtgcacacacacagatatatatctgtgtattcctgtaacagcacgtcagCTCTTCTGTTTCATGGTTTCATCTGTTGAGTGTTATGCACTCTGTGTGCAAATAATGCCTTTATTCACAGTTTTAACCTTCCATTTTCCAAGATACCATAACTATACATTCTCTCCCACTCactctatcagtctgtctgtctgtatcttcTCCCTTTCACTCCTCCTGCTCCCTGCTGCAGTCATCTTGTACACTGACGTGGGGActgagagttaaaaaaaaatatatatatcatgacATGGAAAAGGGGTACAAAATTCAAGCAACTCGTCGCTCCtatttttactctctctcttcccccttAATCCCTTCGGCTTggctttttgtctttatttctctGCTGGATCATTATTCTTGTACagactgtaaaatgtaatattttgtacaactttattgaagaaaaaaagtaattgtaGAAGCTC

Function

symbol description
gnas Predicted to enable G-protein beta/gamma-subunit complex binding activity; GTPase activity; and signaling receptor binding activity. Predicted to be involved in adenylate cyclase-activating dopamine receptor signaling pathway and sensory perception of chemical stimulus. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in brain; gill; head; heart; and olfactory epithelium. Human ortholog(s) of this gene implicated in several diseases, including ACTH-independent macronodular adrenal hyperplasia 1; McCune Albright syndrome; pituitary adenoma 3; progressive osseous heteroplasia; and pseudohypoparathyroidism (multiple). Orthologous to human GNAS (GNAS complex locus).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(s) subunit alpha

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K04632 GNAS; guanine nucleotide-binding protein G(s) subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945572.2 True 3912 mRNA 0.44 12 3854960 3920608

Neighbor

gene id symbol gene type direction distance location
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding upstream 150052 3686621 ~ 3704908 (+)
aamp aamp,LOC107750832 coding upstream 173494 3667276 ~ 3681466 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding upstream 205706 3634096 ~ 3649254 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding upstream 241419 3589067 ~ 3613541 (+)
LOC113545865 NA coding upstream 310425 3540809 ~ 3544535 (+)
dzip1 NA coding downstream 49177 3969785 ~ 4005335 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 140283 4060891 ~ 4110323 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding downstream 191566 4112174 ~ 4127858 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding downstream 214444 4135052 ~ 4244437 (+)
LOC113545914 NA coding downstream 471898 4392506 ~ 4425544 (+)
LOC113545954 NA non-coding upstream 6061 3846613 ~ 3848899 (+)
LOC113545823 NA non-coding upstream 17991 3829589 ~ 3836969 (+)
G21212 NA non-coding upstream 96532 3750033 ~ 3758428 (+)
G21203 NA non-coding upstream 121867 3731917 ~ 3733093 (+)
G21197 NA non-coding upstream 139969 3713307 ~ 3714991 (+)
G21251 NA non-coding downstream 620 3921228 ~ 3927167 (+)
G21255 NA non-coding downstream 14166 3934774 ~ 3935373 (+)
G21267 NA non-coding downstream 74892 3995500 ~ 3995788 (+)
G21269 NA non-coding downstream 91767 4012375 ~ 4012680 (+)
G21271 NA non-coding downstream 93062 4013670 ~ 4013897 (+)
LOC113545962 NA other upstream 112654 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 267317 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 276652 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 487673 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 661499 3182307 ~ 3193461 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 354465 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 431069 4351677 ~ 4351748 (+)
spega speg other downstream 833658 4754266 ~ 4759645 (+)
G21835 NA other downstream 1167526 5088134 ~ 5088578 (+)
G21901 NA other downstream 1287738 5208346 ~ 5208864 (+)

Expression


Co-expression Network