aamp (aamp,LOC107750832)


Basic Information

Item Value
gene id aamp
gene name aamp,LOC107750832
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3667276 ~ 3681466 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945579.2
CCTCGTTCACAGTGTGCGCAGCCATATTGCTTTGACGTCACTCCAGAAATGAATGGTGGGAAGGAACTGGTAATTGACAAGACTACTCCAAGCTGACGAGTTAAGTTAAGGGGgcgttttcttttgcttttactggttggaggtggggaattacaagttgctaCCTCGACTCGAACGCAGCAGTAGGTGCCTTTGTAATGCCGTCTTCCAAACGACTTCCTtgtttaagtgcactacaaaatgtacaaagtaATGGGGTCTGTgtcctatctagtgcactatttaTGTAGTTGGAAGTCGTTTGGGACGGGTCAGCCTTGTAAACGTCACCGCTGGGTCCAGCTAATCCAGCTAACACGTGAATTTAGGTACCGATTTTTGACTTAAGATTACATTTGACATTTTGCTGTGAAACTTTATTGCTTATATTTGGTTAAATGAGGATACGCTGTTGGAGTTTTCAGCCTTACGAGACGCTTTTTAGTACTATAGTGTAATAGCAAAGGCAGAGGCAAGTCACCACGCTAGCTAAGTTTAGTTGGACAGCATCGCACAGGCCATGGAGAACTCTGAAGAAGATACTGTGCAGCTTCATGGAGACGAGGAAATCATCGAAGTTATTGACTTGAATGACACAGAACAGACAACCACAGatgATCTTGCAGAGGAATTGGAAGATGTGGATTTTGCAGAAGCTGAAGGAACTGCAGATGATGAAGGCTGGGAGACAGAGGATGAGATGGAGGCAGACCAGGATGACAGCGAGCTCACGTTCATCAAACACACCGGTTCTGTTTTCTGCGTCAGTTTGGACCCAGTAACAAACAACCTGGCCATCACAGGTGCTGAGGACGACAAAGCTTATGTATGGAACGTCATCGATGGAGACGTGTCGTTTGAGTGTACAGGCCATAAGGACTCAGTTACATGTGCAACATTCAGCCATGACTCAAAGCTGGTGGCGTCCGGGGACATGAGTGGTCTGATTAAAGTGTGGAAGGTTGAAGCCAAAGAGGAGATCTGGTCTTTTGAAGTAGGAGATCTAGAGTGGCTGCAGTGGCACCCCTGTGCACCAGTGTTGCTTGCAGGTACTGCTGATGGCAATATGTGGATGTGGAAGATACCAAGTGGAGAATGTAAGACCTTCCAGGGACCCAACTGTCAGGCAACAAGTGGAAAAATCCTTCCCGATGGAAAAAGAGCGATGGTGGGTTATGAGGATGGGACCCTGCGTCTGTGGGACCTTAAGCAAGGCAATACAATCCATGTCATTAAAGGTTACGATGGCCACCAGGGGCCACTGACATCTATGGAGTGCAACAAGGATGGAACCCTGGTTCTCACAGGATCAACTGATGGACAGGCTAAACTCATTAACACATCAACAGGCAAGGTACTGGGTTCATTCTCGATTGAGAACACTGAGGAGAAAAACACGATGGAGGAGCAGGATTCCATCTCAGTGGAGTCTGTAGGATTTTGTAATGTGCTGCCCCTGATTGCTGTGGCATATCTGGATGGCACTCTGGCCATATACGACTTGACCACACAGAGCCTTAGACACAGGTGTAAACATGATGTAGGGATCGTCCATCTTCAGTGGGAGCAGACCTCAGCCGTGGTGGCTACCTGTAATCTAGGTGGAGTTGTGACTCTGTGGGATGCTCGCTCAGGAAACATGGTGGCTGAATATCGTGGTCACACAGCAGAGATCCTGGACTTCACGCTCAACCGAGATGCTTCCATGGCTGTGACAGCAGGTGGGGACCACAAAGCCAAAGTCTTCTGTCTTCAGAGGCCTGATCGATAGGACAAGATTGACTTTCCCCATGGATTGAAACAACCAGTTAGACTGTTTCCACATCCTCAGAGAATGGTCTTGCCCCCTAATGTTTTACTGACTGAATCCAGCTGTTTCCCAGTTCTACAGACTAGTGTTTTTACACAATTAAGTGTAATTTGGTGATTACTCACAAATTTGCTCAGACTGACTGGCTTCAGAAGCTTAAGACATCCTGACCactgtgatttttgtttttgggtGAGTCATTCATAATTGCTTCATTTATGTGTAATCTGTAATGTATATTGGCATTACATTTCAATTATGggtgaataaatctgaaattttaCCACTTTGCATGACAAAGTGAAATAATCAGCACGAGTTTGTTGATTCCTGCTGTATACTTTTTGCTCATGAATTCTTTGACCTAGTTAAGACACAACCCATTTTGACTTCTGTTTAGTCTTTTCATGTAGTTCATCACCAGTAAAACATAAGGCACACTTTGGTTATGTATTGATAATAAAGGAATACTAAtacat

Function

symbol description
aamp Predicted to be active in cytosol. Is expressed in several structures, including digestive system; immature eye; nervous system; neural plate; and segmental plate. Orthologous to human AAMP (angio associated migratory cell protein).

NR:

description
PREDICTED: angio-associated migratory cell protein

GO: NA

KEGG:

id description
K24725 AAMP; angio-associated migratory cell protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945579.2 True 2328 mRNA 0.45 11 3667276 3681466

Neighbor

gene id symbol gene type direction distance location
fam210b fam210b,LOC102797503,LOC106566122 coding upstream 18022 3634096 ~ 3649254 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding upstream 53735 3589067 ~ 3613541 (+)
LOC113545865 NA coding upstream 122741 3540809 ~ 3544535 (+)
sema5bb LOC108271639,LOC108430840 coding upstream 152193 3448150 ~ 3515083 (+)
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding upstream 275707 3377514 ~ 3391569 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding downstream 5155 3686621 ~ 3704908 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding downstream 173494 3854960 ~ 3920608 (+)
dzip1 NA coding downstream 288319 3969785 ~ 4005335 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 379425 4060891 ~ 4110323 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding downstream 430708 4112174 ~ 4127858 (+)
G21168 NA non-coding upstream 304 3666745 ~ 3666972 (+)
G21138 NA non-coding upstream 13309 3653751 ~ 3653967 (+)
G21136 NA non-coding upstream 15298 3649331 ~ 3651978 (+)
LOC117599318 NA non-coding upstream 284680 3379891 ~ 3382596 (+)
G20868 NA non-coding upstream 313591 3331762 ~ 3353685 (+)
G21178 NA non-coding downstream 515 3681981 ~ 3682254 (+)
G21197 NA non-coding downstream 31841 3713307 ~ 3714991 (+)
G21203 NA non-coding downstream 50451 3731917 ~ 3733093 (+)
G21212 NA non-coding downstream 68567 3750033 ~ 3758428 (+)
LOC113545823 NA non-coding downstream 148123 3829589 ~ 3836969 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 79633 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 88968 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 299989 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 473815 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 603249 3053331 ~ 3064027 (+)
LOC113545962 NA other downstream 47186 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 593607 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 670211 4351677 ~ 4351748 (+)
spega speg other downstream 1072800 4754266 ~ 4759645 (+)
G21835 NA other downstream 1406668 5088134 ~ 5088578 (+)

Expression


Co-expression Network