dzip1


Basic Information

Item Value
gene id dzip1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3969785 ~ 4005335 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945604.2
GGAatgttcctcctcctcctcctcctcctcctcctctcttaCGTCACGGCCGCCCGCATCGTCCAGGGTAACTCGAGTTCCCCACTTCACAGagTTTGTCAGCAATGTGGGCCACGCGCTTTTGTTTCCATGGAGACTGACAGGACGTCACTCAGCGCGCAGAGGAACCGCTGCTGAAGCTTCTTCAAAATACAGCATGCCATTTTACAGCAATGTCTACTACCCGTTTTCATCAGAGCCCCACAGCGCTCATGCCACATCTTTGATGAATTCCCCTGAGTGTCAGCCATCCTCAGACCAGCAGATCAGACCTCCCGGCTTGGCCATGTCAGGAGCCTCCGTTCCTCCTCCGTTCAAGTTTCGCACCCGTCGCGAGAGTGTGGACTGGCGTCGGATTAATGCAATCGATGTGGACCGGGTGGCCAGTGAGCTGGACTTTCAGATGCTCCAGGAGCACATCGCAGGGGTGACATTCTGCAGCTTAGAAGGTGAGCGATGCCTGAACTGTCAGAGCCAAGTGGACCCGGCGCTGCTCAAGCTCTTCCGGCTAGCCCAACTCACAATTGAATACCTGCTGCACTCTCAGGACTGCCTGACTCTCAGCCTGCAGGCTGCTGAGCAGCAGCTTCAGACCGAGACCAGAGAGAAGCAGCATCTCCAGGTGCAGCTGCAGAAGCAGAGCCAGGACGCCAAGCTGTTAAAAGAAGAGCTAAAGCAGCGGAAGAAGATTATTGCCTCTCAGCAAGCCATGATCAGTGCAGGCCTAACTAATTACCATAAGTGCCAACATTGTGAAAAAGCCTTCatgaacatctcattcctgCAACGTCACCTGCAACGCAGGCATCCTGTGGAGCATGACATTAAACTGATCGCTGATAATCAGAAGGATCTTCAGACAAAAAAGCTACAAGAAGAGATCATCAGGCTGCAGGATCAGCTAACCCTGGCTAAATCTGAAATGGAGACCCAGCAAAAGGATTACAATACCAAACAGGAGAAGGATCTAACTCAGAAGCAGGCTGACTTTATGAAACAGCTGGAAATCTGGAAGGAAAATGAGCGTGTGCGCATGAACAGCAAAATTGATGAAGTTAAGCAGGCCTGTCAGAGAGACATGGACTCCATGcatcagaaaaacagaaacctaGAGAAACAAGTGTTGAAGCTGCAGCAAAGCAGTAAGATGCAGGAGAACATGCAGCCTGTGCAGGGACAAGCAAGTTCGGTGCGGAGCAGTGAAGACAAACAGAAGCAGGAGGTTACTCATCTCCAACAGAAGCTCCACCAACAGgaAATCAAGTGGgcagcaaaaatgcaaaaaataaaggaagaatACGAGAGCGAGAAAAATCAGCTCCAGACAGCATTGGCACAGACGCACTCCACTGTCTCCAAGGAGAAGAAAAGGTTAGAGAGGCAGGTGGAGGAACTGGAAGTCAGGCTGgaagagcagcagcagctcatcACATCCCAAAACATGCAGataAAATATTTCTCACCTAAGTCAACAATGCAACAAGAAGAGTTTGCAGCTGTTGCAGCAGCTCCAGAACCTAAAACGAGAGTGGTGGTCAGTGAGCAGTCCAGCTTGGTCTATAAATTGGATCCTATAGTGGAGCTTTCAGAGGAGGACAAAGATTCATCAAGCTTCTCAGAGGGCCCTGCTGAGAGCCAGTCAAGGCAGCAGAAAGTGAAAGAGCTACTGAAGAACCCCAGCCTCAAAAGGGACATGCACTTGGCTGTGCAGCAAAGCCTCCATGACAAGCTGTTACAATTAGGCATTGAGCCTGCTGTTGGTGGGCTCTCTAAGACAACATTTGATAGCGCCTTGGCTCGTGTGGTCTCTGAGAGGCAGCAGAGGCAGAGGGAATGTACTGAGTACCGTAAGATGCAGAAGGATCTCAGCCAAAATCTAGACAGAAGAGTTAAGGAACGGAGCACACGTCCAGTTGCCAAGCCCAAACAATCAGGACACGttcgAACGCTACCTCAGTCCAGGCCACGGTCCAACAGTCTTCCTGTTACAGTCACCAAAGTAGCGTCAGGCCCTCTGGCCAGACGGCAGTACACACCGCAGCCAGCTCATCAAAACAACACTTCCACTCGTCCCACAACCTCCACGCCAATGGCCCCTCACAAAGTCCCTCGATTCAGTCAAGATGAAGACTCCTCAGAAGAAGAGGAATCTACCAAAGACTCTCCTCAGGCGCAGAAAGCCACAGTGAAAAGCCACTCCCCAGGAGTTCAGCAGCACACTGCTCCCCCAGCTCTAGCCTCATTTCAGAAAGCAGCACAGAGCTCTGGATCTCACCAGGCCCCAGTGTTTAGCAAGATGGAAGTGACCGTGCAGGAAAGCGAGAGTGAGTGGACAGAAGGCAGCGAGATGGAGGAGATTTCCTTAGATCAACTGCAGAAGCACACAGACCAGAATGGAAATGTTCCAAAGACTTCATGCAGTTATGTGAAGGCACTAAGCAATAATCTGGAGAAGCAGCCTGCAGACCAAGGGCATAAAAGAACAGCAGGAGTTGCCATCCCAGATAAACCTACTGGAGTCACTAACACAAATGATGCAGTGTGGGAGATTAAACACACTGATTTCGCAGGACGAAACGACGATGACTGGGATATTTCCTCTCTAGAGGATGTCCCTCCTGCACACAAATCCGGTTCTGCCCCTGTAAAGAACAGCATAGACAAGAGTCTTGACACCAGCACTAGTGTGTGGGGAACTTTTACTGGCAAAGGACAAGAGCCAGgtcTGAAAGATACTGGCAGCACTCTGAAGAGCAGTATTGTGACAGTTAGTGACTGGGATGACTCAGATGGCACATAAATATAATAGCATTTAGCAATAAGCAATAATAatccaaaaacaacacacagaaTAAAATGGACTAAAcagatttctttattttgaatgCTGCTGATGGAACATGTTCAGAGATGTTTGCGCTAATATGCTGCAAGTCGTACACATAAATATTCAAGTAACTGTAATAATACTCAAGATCCTTAGTACATGTGGTGAAGTTCAAAACTATTCAGGGACCACAAAAGCAATATAGACTTTTCTTTGTACTTCACAATGTCATTGATATATAGTGTTAAAAATTTTACATAAATTTTAAACCTTATGTGAATTTATAGTAAAttttcatggatttttttttaatcatggaaaaaagtgtgtaaacagtacagttttgttaaattgtgctttacttttttatttctaagaCTATGCATATCTGTGTATCTGAGGTGTGCATGgaactgttttttcccccccattcACTCCCAAAAGGAATTCTGACTAATCCCCCACTGTTCTCGCAAAAAGTTTGACTCAcagttatattttttgtttgctccatgtgcattttttttaaaacaaaatatactgCTATTACCCATTATTATCGATGCTGCATGAACTAAtatgttcaaaaataatttttttctttacaaagaCTGTGACTGTCATCTACTATGACTGTCGGTCATATAAGAATTTCCTCTGAATGGGTTATGTTCCTTTATTGTACCTTGTTGCTCTTTGGCAACATACATGTAATGATAAAATGAATcattgttaaaaa

Function

NR:

description
PREDICTED: zinc finger protein Dzip1-like isoform X3

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0035082 axoneme assembly biological_process
GO:0001568 blood vessel development biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0021984 adenohypophysis development biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16470 DZIP1; zinc finger protein DZIP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945604.2 True 3605 mRNA 0.46 20 3969785 4005335

Neighbor

gene id symbol gene type direction distance location
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding upstream 49177 3854960 ~ 3920608 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding upstream 264877 3686621 ~ 3704908 (+)
aamp aamp,LOC107750832 coding upstream 288319 3667276 ~ 3681466 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding upstream 320531 3634096 ~ 3649254 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding upstream 356244 3589067 ~ 3613541 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 55556 4060891 ~ 4110323 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding downstream 106839 4112174 ~ 4127858 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding downstream 129717 4135052 ~ 4244437 (+)
LOC113545914 NA coding downstream 387171 4392506 ~ 4425544 (+)
LOC117599286 rabl3 coding downstream 437476 4442811 ~ 4443641 (+)
G21255 NA non-coding upstream 34412 3934774 ~ 3935373 (+)
G21251 NA non-coding upstream 42618 3921228 ~ 3927167 (+)
G21250 NA non-coding upstream 51163 3915752 ~ 3918622 (+)
G21249 NA non-coding upstream 108807 3858214 ~ 3860978 (+)
LOC113545954 NA non-coding upstream 120886 3846613 ~ 3848899 (+)
G21269 NA non-coding downstream 7040 4012375 ~ 4012680 (+)
G21271 NA non-coding downstream 8335 4013670 ~ 4013897 (+)
G21281 NA non-coding downstream 105865 4111200 ~ 4111704 (+)
G21293 NA non-coding downstream 150665 4156000 ~ 4156320 (+)
G21297 NA non-coding downstream 197221 4202556 ~ 4204963 (+)
LOC113545962 NA other upstream 227479 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 382142 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 391477 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 602498 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 776324 3182307 ~ 3193461 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 269738 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 346342 4351677 ~ 4351748 (+)
spega speg other downstream 748931 4754266 ~ 4759645 (+)
G21835 NA other downstream 1082799 5088134 ~ 5088578 (+)
G21901 NA other downstream 1203011 5208346 ~ 5208864 (+)

Expression


Co-expression Network