si:ch211-181l5.2 (LOC108273231)


Basic Information

Item Value
gene id si:ch211-181l5.2
gene name LOC108273231
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4004622 ~ 4008577 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945607.2
CGGGCTTCAGCATGCATAACAACCTAAGGGAGGTTGTCTTTCAGAGCCAGACGCCTCagtgttcttttctctttcaataTAATCCTTTCTGGCAATTCATGTACAGCTTTGTTTGATCAACTTAAGCAGGATATTCCCTTCTCTTGGAGTCTCTCTTAGACTGTAGTATGAAGCCAGCAAAATGAATCGCACGGCTATGATGTATTTAGAAATTGGCTGCTTTTTGTGTTGCATTTGTGGATGGATTCTGATCTGTTCTACGCTGCCTACCGAGTACTGGAATTTCTCTGAGGTAGGTGATGCTGTACTCACCACGGTCAACTACTACTCCAACCTGTGGATGGATTGTGTATCTGACACCACTGGTGTTTCTGACTGCAAGTACTATCCTTCCTTGATGGCCCTTCCAGATATCCCTAGATCATGGaaggtgttcttgatctggccatcTGTTTTCCTTCACCGTGGAAAGACTTattctgtcatccaccacagttgttttctgtggtcttctgggccttttggtgttcctgagcttaCCAGTAAAGTTTTCTTGCATGTCACACGTGCCCTGGCCATTGTCTCTGTAATTCTGGGATTTTGGGGGTCCGTGCTCACCTTGATTGGAATGAAGTGCACGAAGATTGGGGGTTCTGAACTTGTTAATACAAGAATAACATTAGCAGCTGCCTTTACCTATATGGCATCAGGACTCTGTGGTATGGCAGTGTACTCCATGTGGGGAAACAGAATACGGGCAGAATTTGTGGATGTCAACTACAAGCCACAGAAatTTGAACTTGGTGCAGCATTATTCATAGGATGGGGAGGTTCCAGTTTGGTTATATGTGGAAGTGCAGTTTTGTGTTATTTCtctgggagagagagatttagcTCAGGGTCAAATGACACACTGGTTCAGGCAGATGCTTACACGAGAGCTCGATCGAGAGGGACATATGTGACTGCTCGAACCAGAGGAACCTATACGTTGCCTGCCTACTCCAAGGCCAATACAGCAATCATGCCCCCCTTATTCCAATCAGGCAGAGAGAGCAAGGGAACCAGAAAAACACAAAGGACATATACAGCCCGAAGGACAGCAGCGTCCGTGCCGCTCATGGATTCTTATGTGTGAAGCCCGTGTTTTGGAAACAATATATTGAGTGGATCTGACTTAGGAGCTCTTTCATCAAGAACAGATACCCAGGAAAAGATAACCAGGGATGAAATTTAATTATGTGAATTTATAGTACCCTCCAAAAAAAGGTATTTTTATAAAAGCATGCACATTCTCTGAAAAAGTAGTAATCAGTCCAttcagaataataattaaaaaaaaacctttgggtAGCTCATTCCTtacaatggatggatggatggataatagatttttttacaatttacaaaaatgtattcaCCAGTTTAACAGTAGGTGTGCCTTAATGGTACCACTTACAGCATATGTAAGATACATGATGTGTAAATCTCTCTCCTTAAAGGGGGATCCCTCTGTTTTTCCCAGACCAACATCACTTTTAGTTACCCTTACAAGACTTCTTCAAATTTCTGTTAATCAGTTAATCAATAGCTATTCTGTTAATAGCTATTGTAACTAAAGAACTATTAtgcattatctttttttttgtttttaacaatgATTCATTTTATCATTACATGTATGTTGCCAAAGAGCAACAAGGTACAATAAAGGAACATAACCCATTCAGAGGAAATTCTTATATGACCGACAGTCATAGTAGATGACAGTCACAGtctttgtaaagaaaaaaattatttttgaacataTTAGTTCATGCAGCATCGATAATAATGGGTAATAGcagtatattttgttttaaaaaaaatgcacatggagcaaacaaaaaatataactgTGAGTCAAACTTTTTGCGAGAACAGTGGGGGATTAGTCAGAATTCCTTTTGGGAGTgaatgggggggaaaaaacagttcCATGCACACCTCAGATACACAGATATGCATAGtcttagaaataaaaaagtaaagcacaatttaacaaaactgtactgtttacacacttttttccatgattaaaaaaaaatccatgaaaaTTTACTATAAATTCACATAAGGTTTAAAATTTATGTAAAATTTTTAACACTATATATCAATGACATTGTGAAGTACAAAGAAAAGTCTATATTGCTTTTGTGGTCCCTGAATAGTTTTGAACTTCACCACATGTACTAAGGATCTTGAGTATTATTACAGTTACTTGAATATTTATGTGTACGACTTGCAGCATATTAGCGCAAACATCTCTGAACATGTTCCATCAGCAGcattcaaaataaagaaatctgTTTAGTCCATTTTA
>XM_026945608.2
CGGGCTTCAGCATGCATAACAACCTAAGGGAGGTTGTCTTTCAGAGCCAGACGCCTCagtgttcttttctctttcaataTAATCCTTTCTGGCAATTCATGTACAGCTTTGTTTGATCAACTTAAGCAGGATATTCCCTTCTCTTGGAGTCTCTCTTAGACTGTAGTATGAAGCCAGCAAAATGAATCGCACGGCTATGATGTATTTAGAAATTGGCTGCTTTTTGTGTTGCATTTGTGGATGGATTCTGATCTGTTCTACGCTGCCTACCGAGTACTGGAATTTCTCTGAGGTAGGTGATGCTGTACTCACCACGGTCAACTACTACTCCAACCTGTGGATGGATTGTGTATCTGACACCACTGGTGTTTCTGACTGCAAGTACTATCCTTCCTTGATGGCCCTTCCAGTTTTCTTGCATGTCACACGTGCCCTGGCCATTGTCTCTGTAATTCTGGGATTTTGGGGGTCCGTGCTCACCTTGATTGGAATGAAGTGCACGAAGATTGGGGGTTCTGAACTTGTTAATACAAGAATAACATTAGCAGCTGCCTTTACCTATATGGCATCAGGACTCTGTGGTATGGCAGTGTACTCCATGTGGGGAAACAGAATACGGGCAGAATTTGTGGATGTCAACTACAAGCCACAGAAatTTGAACTTGGTGCAGCATTATTCATAGGATGGGGAGGTTCCAGTTTGGTTATATGTGGAAGTGCAGTTTTGTGTTATTTCtctgggagagagagatttagcTCAGGGTCAAATGACACACTGGTTCAGGCAGATGCTTACACGAGAGCTCGATCGAGAGGGACATATGTGACTGCTCGAACCAGAGGAACCTATACGTTGCCTGCCTACTCCAAGGCCAATACAGCAATCATGCCCCCCTTATTCCAATCAGGCAGAGAGAGCAAGGGAACCAGAAAAACACAAAGGACATATACAGCCCGAAGGACAGCAGCGTCCGTGCCGCTCATGGATTCTTATGTGTGAAGCCCGTGTTTTGGAAACAATATATTGAGTGGATCTGACTTAGGAGCTCTTTCATCAAGAACAGATACCCAGGAAAAGATAACCAGGGATGAAATTTAATTATGTGAATTTATAGTACCCTCCAAAAAAAGGTATTTTTATAAAAGCATGCACATTCTCTGAAAAAGTAGTAATCAGTCCAttcagaataataattaaaaaaaaacctttgggtAGCTCATTCCTtacaatggatggatggatggataatagatttttttacaatttacaaaaatgtattcaCCAGTTTAACAGTAGGTGTGCCTTAATGGTACCACTTACAGCATATGTAAGATACATGATGTGTAAATCTCTCTCCTTAAAGGGGGATCCCTCTGTTTTTCCCAGACCAACATCACTTTTAGTTACCCTTACAAGACTTCTTCAAATTTCTGTTAATCAGTTAATCAATAGCTATTCTGTTAATAGCTATTGTAACTAAAGAACTATTAtgcattatctttttttttgtttttaacaatgATTCATTTTATCATTACATGTATGTTGCCAAAGAGCAACAAGGTACAATAAAGGAACATAACCCATTCAGAGGAAATTCTTATATGACCGACAGTCATAGTAGATGACAGTCACAGtctttgtaaagaaaaaaattatttttgaacataTTAGTTCATGCAGCATCGATAATAATGGGTAATAGcagtatattttgttttaaaaaaaatgcacatggagcaaacaaaaaatataactgTGAGTCAAACTTTTTGCGAGAACAGTGGGGGATTAGTCAGAATTCCTTTTGGGAGTgaatgggggggaaaaaacagttcCATGCACACCTCAGATACACAGATATGCATAGtcttagaaataaaaaagtaaagcacaatttaacaaaactgtactgtttacacacttttttccatgattaaaaaaaaatccatgaaaaTTTACTATAAATTCACATAAGGTTTAAAATTTATGTAAAATTTTTAACACTATATATCAATGACATTGTGAAGTACAAAGAAAAGTCTATATTGCTTTTGTGGTCCCTGAATAGTTTTGAACTTCACCACATGTACTAAGGATCTTGAGTATTATTACAGTTACTTGAATATTTATGTGTACGACTTGCAGCATATTAGCGCAAACATCTCTGAACATGTTCCATCAGCAGcattcaaaataaagaaatctgTTTAGTCCATTTTA

Function

NR:

description
PREDICTED: claudin-10A isoform X1

GO:

id name namespace
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945607.2 True 2362 mRNA 0.38 6 4004622 4008577
XM_026945608.2 False 2224 mRNA 0.38 5 4004622 4008577

Neighbor

gene id symbol gene type direction distance location
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding downstream 45803 3938000 ~ 3958819 (-)
tubb1 tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746 coding downstream 158898 3839963 ~ 3845724 (-)
LOC113545812 LOC107667744,LOC107582924 coding downstream 181339 3817517 ~ 3823283 (-)
vapb vapb,LOC101078863 coding downstream 199013 3788470 ~ 3805609 (-)
ctsz ctsz,LOC107729770,LOC107596856,LOC107708086,LOC107666025 coding downstream 292865 3704874 ~ 3711757 (-)
si:busm1-52i16.2 LOC108272376 coding upstream 15213 4023790 ~ 4025978 (-)
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding upstream 25494 4034071 ~ 4039284 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding upstream 350543 4359120 ~ 4365171 (-)
LOC117596284 NA coding upstream 438790 4447367 ~ 4447479 (-)
LOC117596286 NA coding upstream 449759 4458336 ~ 4458447 (-)
G21377 NA non-coding downstream 4986 3993879 ~ 3999636 (-)
G21358 NA non-coding downstream 72054 3932136 ~ 3932568 (-)
G21306 NA non-coding downstream 219068 3785140 ~ 3785554 (-)
G21303 NA non-coding downstream 289579 3713299 ~ 3715043 (-)
G21153 NA non-coding downstream 347950 3656395 ~ 3656672 (-)
G21382 NA non-coding upstream 554 4009131 ~ 4009340 (-)
LOC113545971 NA non-coding upstream 35987 4044564 ~ 4062409 (-)
G21400 LOC108272755 non-coding upstream 68551 4077128 ~ 4077827 (-)
G21341 NA non-coding upstream 102705 4111282 ~ 4111654 (-)
G21333 ddx3x,LOC108272611,LOC103389314,LOC100708206,LOC101487926 non-coding upstream 114418 4122995 ~ 4127844 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 226634 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 267736 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 633468 3348308 ~ 3371154 (-)
LOC113545802 NA other downstream 1370942 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 2181954 1756160 ~ 1822668 (-)
G21434 NA other upstream 248091 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 323522 4332099 ~ 4332171 (-)
obsl1a obsl1 other upstream 804698 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 1102885 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 1397390 5405967 ~ 5414086 (-)

Expression


Co-expression Network