npepl1 (npepl1,LOC107666140,LOC107554193)


Basic Information

Item Value
gene id npepl1
gene name npepl1,LOC107666140,LOC107554193
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3715807 ~ 3736886 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945609.2
GTTGTCAAGGTGTGAAAAAATTGACATGTGAATGCATTAATAACACATCTACAACCCGCAAACAAACAGCGTGTTGTTCAGGTGTGAACAATCGTGTAGTTTTGAGCCGAATGGCCTTCCATAATAAAGAGCCGGCTGTAGGAGTCGATTCATTCGCGAAAGAAAACATCTCTAGCCCAAACATGGCGAATGTACTGCTCGAGTTCAAGGCTTCAGTCGGTGACTTGGAGCCCCAGAGCTGCCCATTGCTCATCATCGGGCAGCTCGGATACTTGCAACAAATAAACTGGAATCAAGTTAAAGGGAAACTGCTGCCGGTGGTGACCAAAGAGACTTGGCAGTTGGCGTTAAGCAGTCTCAATCCCAACCCTACAGACAGTTGCCCACTGTATCTGAATTATGCGAGTGTGGCAGCACTGCCCTCTCGCGTAAGCCGTCACAACAGTCCATCCTCTGCCCACTTTCTTACTCGGTTGGTTCGCACCTGTTTGCCCGCTGGCAGCAACCGCTGCATCCTGATGCTGTGTGAACAGTCTGATGTGTTTGCATCAGCGTGTGCCATTGCCCGTGCTTTCCCACTCTTCACTCGCCGCTCTACCTCATGCACAATGGAGAAGAAGCGCGTCACCGTGGAGTTTGTCATTGTCGGCCAGGAAAATAGCCATTTGGATCCTTCCACAATCAAGTCTCTTAACAATGTGGCTGATGGTGTTCGTCTGGCAGCACGAATTGTGGACACTCCTTGCAATGAGATGAATACCGACCATTTTCTAGAGGAAATCAAAGCAGTGGGAAACGAACTGGGCATCACACCAACTATAATTCGAGGCAAGGAATTAAAACAAAGAGGCTTTGGAGgtATTTATGGTGTAGGTAAAGCAGCTGAACACCCACCTGCTCTGGCTGTGCTTAGTCACACCCCCTCAGGTGCCACTCAGACCATTGCGTGGATTGGCAAGGGCATTGTATACGACACGGGTGGCCTTAGCATTAAGAGCAAAAGCACAATGCCAGGCATGAAGAGAGACTGCGGCGGAGCAGCTGCTATTTTGGGAGCTTTTAAAGCCGCCGTTAAGCAGGGGTTTAAGGATAACCTGCATGCAGTGTTCTGCCTGGCTGAGAACTCCGTGGGGCCTACAGCCACCCGGCCAGATGATATCCACACACTGTACTCTGGAAAGACAgtggaaataaataatactgaTGCAGAGGGAAGATTGGTGCTGTCTGATGGCGTTGTATATGCAAGTAAGGATCTCTCTGCAGATATTATCCTGGATATGGCAACTCTGACTGGAGGTCAGGGAATCTCCACTGGAAAATACCATGCTGCTATTATGACCAACAGTGAGCAGTGGGAGACGGCGTGTGTGAGAGCAGGCCGCAGCAGTGGTGATCTCACGCATCCTCTTGTCTACTGCCCTGAGCTCCACTTCAGCGAATTCACCTCTGCAGTTGCTGACATGAAGAACTCTGTAGCAGACCGTGAGAATGCCCAGAGCTCCTGTGCTGGCCTCTTTATTGGCTCTCACTTGGGTTTTGACTGGCCTGGTGTGTGGGTGCATGTGGATATTGCCTCACCTGTGCACACTGGTGAACGTGCTACAGGTTTTGGAGTAGCTCTGCTTTTGGCTCTGTTTGGTCAGGCATCTGAAGACCCACTTCTCAATATGGTGTCTCCATTGGGCATCACTACTGTAAATGCCTCCTCAGGAGaccagatggagagagacagcaaaaggAGAAGATTAGTCTGAAGACCACCTCAAACCGCTCTAGTTTCTATATTCTGAAACCAGTCCAAAAGCAGcaacataacattaaatgcataaatacacaCGCCCCTCATTTGTTTGACCATCAAGCACTGACTATCTCAAAATTACTGTTTTAATTCACTTTACTAGACATAAGAACACAAGCAGTAGTGATGTATTGAATAAAATGAAGGTGTCAAAATAAATTTGTCACAGAGACGCTTA
>XR_004580246.1
ATGCGTTGTCAAGGTGTGAAAAAATTGACATGTGAATGCATTAATAACACATCTACAACCCGCAAACAAACAGCGTGTTGTTCAGGTGTGAACAATCGTGTAGTTTTGAGCCGAATGGCCTTCCATAATAAAGAGCCGGCTGTAGGAGTCGATTCATTCGCGAAAGAAAACATCTCTAGCCCAAACATGGCGAATGTACTGCTCGAGTTCAAGGCTTCAGTCGGTGACTTGGAGCCCCAGAGCTGCCCATTGCTCATCATCGGGCAGCTCGGATACTTGCAACAAATAAACTGGAATCAAGTTAAAGGGAAACTGCTGCCGGTGGTGACCAAAGAGACTTGGCAGTTGGCGTTAAGCAGTCTCAATCCCAACCCTACAGACAGTTGCCCACTGTATCTGAATTATGCGAGTGTGGCAGCACTGCCCTCTCGCGTAAGCCGTCACAACAGTCCATCCTCTGCCCACTTTCTTACTCGGTTGGTTCGCACCTGTTTGCCCGCTGGCAGCAACCGCTGCATCCTGATGCTGTGTGAACAGTCTGATGTGTTTGCATCAGCGTGTGCCATTGCCCGTGCTTTCCCACTCTTCACTCGCCGCTCTACCTCATGCACAATGGAGAAGAAGCGCGTCACCGTGGAGTTTGTCATTGTCGGCCAGGAAAATAGCCATTTGGATCCTTCCACAATCAAGTCTCTTAACAATGTGGCTGATGGTGTTCGTCTGGCAGCACGAATTGTGGACACTCCTTGCAATGAGATGAATACCGACCATTTTCTAGAGGAAATCAAAGCAGTGGGAAACGAACTGGGCATCACACCAACTATAATTCGAGGCAAGGAATTAAAACAAAGAGGCTTTGGAGgtATTTATGGTGTAGGTAAAGCAGCTGAACACCCACCTGCTCTGGCTGTGCTTAGTCACACCCCCTCAGGTGCCACTCAGACCATTGCGTGGATTGGCAAGGGCATTGTATACGACACGGGTGGCCTTAGCATTAAGAGCAAAAGCACAATGCCAGGCATGAAGAGAGACTGCGGCGGAGCAGCTGCTATTTTGGGAGCTTTTAAAGCCGCCGTTAAGCAGGGGTTTAAGGATAACCTGCATGCAGTGTTCTGCCTGGCTGAGAACTCCGTGGGGCCTACAGCCACCCGGCCAGATGATATCCACACACTGTACTCTGGAAAGACAgtggaaataaataatactgaTGCAGAGGGAAGATTGGTGCTGTCTGATGGCGTTGTATATGCAAGTAAGGATCTCTCTGCAGATATTATCCTGGATATGGCAACTCTGACTGGAGTCAGGGAATCTCCACTGGAAAATACCATGCTGCTATTATGACCAACAGTGAGCAGTGGGAGACGGCGTGTGTGAGAGCAGGCCGCAGCAGTGGTGATCTCACGCATCCTCTTGTCTACTGCCCTGAGCTCCACTTCAGCGAATTCACCTCTGCAGTTGCTGACATGAAGAACTCTGTAGCAGACCGTGAGAATGCCCAGAGCTCCTGTGCTGGCCTCTTTATTGGCTCTCACTTGGGTTTTGACTGGCCTGGTGTGTGGGTGCATGTGGATATTGCCTCACCTGTGCACACT

Function

symbol description
npepl1 Predicted to enable manganese ion binding activity and metalloaminopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in cytoplasm. Is expressed in female organism. Orthologous to human NPEPL1 (aminopeptidase like 1).

NR:

description
probable aminopeptidase NPEPL1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG:

id description
K09611 NPEPL1; probable aminopeptidase NPEPL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945609.2 True 1982 mRNA 0.48 12 3715807 3736882
XR_004580246.1 False 1595 misc_RNA 0.50 11 3717715 3736886

Neighbor

gene id symbol gene type direction distance location
ctsz ctsz,LOC107729770,LOC107596856,LOC107708086,LOC107666025 coding downstream 4050 3704874 ~ 3711757 (-)
LOC113545819 LOC108271666 coding downstream 177786 3530784 ~ 3538021 (-)
unc50 unc50,LOC107672653,LOC107686789,LOC107746628 coding downstream 280596 3427322 ~ 3435211 (-)
slc25a12 slc25a12,LOC108271646,LOC108430860,LOC107686753,LOC107582326 coding downstream 300405 3393976 ~ 3415402 (-)
tatdn2 tatdn2,LOC107667383,LOC107582679,LOC107748398,LOC107585107 coding downstream 663530 3044007 ~ 3052277 (-)
vapb vapb,LOC101078863 coding upstream 51584 3788470 ~ 3805609 (-)
LOC113545812 LOC107667744,LOC107582924 coding upstream 80631 3817517 ~ 3823283 (-)
tubb1 tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746 coding upstream 103077 3839963 ~ 3845724 (-)
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding upstream 201114 3938000 ~ 3958819 (-)
si:ch211-181l5.2 LOC108273231 coding upstream 267736 4004622 ~ 4008577 (-)
G21303 NA non-coding downstream 764 3713299 ~ 3715043 (-)
G21153 NA non-coding downstream 59135 3656395 ~ 3656672 (-)
LOC117599952 LOC108271653,LOC108271638,LOC108271644,LOC108271652 non-coding downstream 163856 3549631 ~ 3551951 (-)
G21031 gorasp2,LOC107709057 non-coding downstream 369672 3344474 ~ 3346135 (-)
G20991 NA non-coding downstream 504876 3210509 ~ 3210931 (-)
G21306 NA non-coding upstream 48254 3785140 ~ 3785554 (-)
G21358 NA non-coding upstream 195250 3932136 ~ 3932568 (-)
G21377 NA non-coding upstream 256993 3993879 ~ 3999636 (-)
G21382 NA non-coding upstream 272245 4009131 ~ 4009340 (-)
LOC113545971 NA non-coding upstream 307678 4044564 ~ 4062409 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 344653 3348308 ~ 3371154 (-)
LOC113545802 NA other downstream 1082127 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 1893139 1756160 ~ 1822668 (-)
slc48a1b LOC108271834,LOC107585148,LOC108441111,LOC107733581,LOC107711080,LOC103044934,LOC107685336 other downstream 2678211 1028827 ~ 1037596 (-)
LOC113545844 LOC108272247 other downstream 3102419 594565 ~ 613388 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other upstream 13132 3750018 ~ 3777988 (-)
G21434 NA other upstream 519782 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 595213 4332099 ~ 4332171 (-)
obsl1a obsl1 other upstream 1076389 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 1374576 5111462 ~ 5201212 (-)

Expression


Co-expression Network