erich2 (LOC108271660)


Basic Information

Item Value
gene id erich2
gene name LOC108271660
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3283888 ~ 3294512 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945612.2
ACCCGGAGCATTTCAGAAGCGGAAACATTACCCGTTGCCTTGGAGACGGCGCGCTTGTTGGGGAACGCTGACTCCTTGCCGTCGCTGTAAGGTCGAACTCGAGCTGGTTAGTAATGAGTATGAGCTGAAAGTCGCTGTGTGACAGCAGGAATCAGAAGAGGGAGGGAGTGTTTAAAGAGTTAACACTAACACCGCCGCAGGGCAGATGAGCAGGCTACAGTGCATTGGGACGTCCTCCAAAGTCCCATCCCAGGATGCAGAAGCTGCAGAACCAGGAATCCTCAGCTCCCGAGatgcaCCAGTGACTAAATCAGTCCAGGCAAAAACACAGCTTCAGAAAACCAAACTGAGAGCACGGCCAGAGGGACAGCAGCCGTCTGCGATCACTGAGAGAAGACGTGACAAAGGAAATGTGGACAAGctcacggtggatccagaaaCACAGAGTGAACAGCAGGAGAATGgctttaaaaagacaaaagtcAAGCACAGGCCATCACGGAGCGAGACGCAGGCTGGTGTTCAGGTTCTGTCGCCAACAGACACGACCACGCACAGACAagaacaatcacacacagaaacacactctgCTCCTGTTGGTGCAGAAGAGAAGACTGTAAGTTCAGAGTGTGTGCAGAAGATGCGTGAACCTCTACTCCAGGTGCCCCGATGCCTGGGAGTGCCAAAGTGTGGAGCTGGCCGAAGCTCAAGCGAGGCAGAGAGCAGAGATGAAGAAGAGtgtgaagaagaggaggaggacgcGGATGAATTTCGTGCTCCCATTGAGCTGCTTGCAGAGTTCCTAAAAGCTGTGATGGAAAAGAAGTACACACTCGCCAAGAAACTCTGCCAAATGATTCTTATTTATGAACCAGAGAACCCCGAGGCCAAACACTTCCTTCCTCTCATTGAAGAGAGACTACTGATAGAAGAAGCACAGGAAGGCTCCAGCGGTGAAGACGACAcatctgatgatgatgatgatgatgatgatgataatgatgatgatgaaagcagcagcagtggtagtggtgatgatgatgatgatgatgatgatgatgatacagACACATGTACTGATTCAGATGGAGATGGCAGAAAGGAGGAAGACATTAGCCAGCGGTGAAGGGTTTCTCCTCAACAGctgtccaaacctgttccagctctatggttttaatagattttgtgttttttgtctgcACTTGTGTGATTATTATAAGTCCTTCACCACTCTTCTATTTTTCAGTGTGCCTTTACTTTCGCATTACATCCTTTCTATTTTCACGTTTTCTCTTAGATGTTTTGATTGAgtacaaataaattatatatagtaGGGCTTCAATACTTTTAAGCCACAACGAAACCACaaccaaagaatttttttttaatatgatattacacttttctttttttcttttaaggtGTTGTTACACTTAAAGTTGTTACTTtagcaaaagaaataaagatcGATGATTTTAGTA
>XM_026945613.2
CCATCCCAGGTAAGAAAGACCATGTGGAGCAGTGTGTAGCGTTTACCCCCGAGTCcatccgtgtgggtttcctctgaggtctccagtttcctcccctttcccaaaaacatgccaGATGCAGAAGCTGCAGAACCAGGAATCCTCAGCTCCCGAGatgcaCCAGTGACTAAATCAGTCCAGGCAAAAACACAGCTTCAGAAAACCAAACTGAGAGCACGGCCAGAGGGACAGCAGCCGTCTGCGATCACTGAGAGAAGACGTGACAAAGGAAATGTGGACAAGctcacggtggatccagaaaCACAGAGTGAACAGCAGGAGAATGgctttaaaaagacaaaagtcAAGCACAGGCCATCACGGAGCGAGACGCAGGCTGGTGTTCAGGTTCTGTCGCCAACAGACACGACCACGCACAGACAagaacaatcacacacagaaacacactctgCTCCTGTTGGTGCAGAAGAGAAGACTGTAAGTTCAGAGTGTGTGCAGAAGATGCGTGAACCTCTACTCCAGGTGCCCCGATGCCTGGGAGTGCCAAAGTGTGGAGCTGGCCGAAGCTCAAGCGAGGCAGAGAGCAGAGATGAAGAAGAGtgtgaagaagaggaggaggacgcGGATGAATTTCGTGCTCCCATTGAGCTGCTTGCAGAGTTCCTAAAAGCTGTGATGGAAAAGAAGTACACACTCGCCAAGAAACTCTGCCAAATGATTCTTATTTATGAACCAGAGAACCCCGAGGCCAAACACTTCCTTCCTCTCATTGAAGAGAGACTACTGATAGAAGAAGCACAGGAAGGCTCCAGCGGTGAAGACGACAcatctgatgatgatgatgatgatgatgatgataatgatgatgatgaaagcagcagcagtggtagtggtgatgatgatgatgatgatgatgatgatgatacagACACATGTACTGATTCAGATGGAGATGGCAGAAAGGAGGAAGACATTAGCCAGCGGTGAAGGGTTTCTCCTCAACAGctgtccaaacctgttccagctctatggttttaatagattttgtgttttttgtctgcACTTGTGTGATTATTATAAGTCCTTCACCACTCTTCTATTTTTCAGTGTGCCTTTACTTTCGCATTACATCCTTTCTATTTTCACGTTTTCTCTTAGATGTTTTGATTGAgtacaaataaattatatatagtaGGGCTTCAATACTTTTAAGCCACAACGAAACCACaaccaaagaatttttttttaatatgatattacacttttctttttttcttttaaggtGTTGTTACACTTAAAGTTGTTACTTtagcaaaagaaataaagatcGATGATTTTAGTA
>XM_026945614.2
TCACCCGGAGCATTTCAGAAGCGGAAACATTACCCGTTGCCTTGGAGACGGCGCGCTTGTTGGGGAACGCTGACTCCTTGCCGTCGCTGTAAGGTCGAACTCGAGCTGGTTAGTAATGAGTATGAGCTGAAAGTCGCTGTGTGACAGCAGGAATCAGAAGAGGGAGGGAGTGTTTAAAGAGTTAACACTAACACCGCCGCAGGGCAGATGAGCAGGCTACAGTGCATTGGGACGTCCTCCAAAGTCCCATCCCAGGATGCAGAAGCTGCAGAACCAGGAATCCTCAGCTCCCGAGatgcaCCAGTGACTAAATCAGTCCAGGCAAAAACACAGCTTCAGAAAACCAAACTGAGAGCACGGCCAGAGGGACAGCAGCCGTCTGCGATCACTGAGAGAAGACGTGACAAAGGAAATGTGGACAAGAGCGAGACGCAGGCTGGTGTTCAGGTTCTGTCGCCAACAGACACGACCACGCACAGACAagaacaatcacacacagaaacacactctgCTCCTGTTGGTGCAGAAGAGAAGACTGTAAGTTCAGAGTGTGTGCAGAAGATGCGTGAACCTCTACTCCAGGTGCCCCGATGCCTGGGAGTGCCAAAGTGTGGAGCTGGCCGAAGCTCAAGCGAGGCAGAGAGCAGAGATGAAGAAGAGtgtgaagaagaggaggaggacgcGGATGAATTTCGTGCTCCCATTGAGCTGCTTGCAGAGTTCCTAAAAGCTGTGATGGAAAAGAAGTACACACTCGCCAAGAAACTCTGCCAAATGATTCTTATTTATGAACCAGAGAACCCCGAGGCCAAACACTTCCTTCCTCTCATTGAAGAGAGACTACTGATAGAAGAAGCACAGGAAGGCTCCAGCGGTGAAGACGACAcatctgatgatgatgatgatgatgatgatgataatgatgatgatgaaagcagcagcagtggtagtggtgatgatgatgatgatgatgatgatgatgatacagACACATGTACTGATTCAGATGGAGATGGCAGAAAGGAGGAAGACATTAGCCAGCGGTGAAGGGTTTCTCCTCAACAGctgtccaaacctgttccagctctatggttttaatagattttgtgttttttgtctgcACTTGTGTGATTATTATAAGTCCTTCACCACTCTTCTATTTTTCAGTGTGCCTTTACTTTCGCATTACATCCTTTCTATTTTCACGTTTTCTCTTAGATGTTTTGATTGAgtacaaataaattatatatagtaGGGCTTCAATACTTTTAAGCCACAACGAAACCACaaccaaagaatttttttttaatatgatattacacttttctttttttcttttaaggtGTTGTTACACTTAAAGTTGTTACTTtagcaaaagaaataaagatcGATGATTTTAGTA
>XM_034311243.1
atgcaCCAGTGACTAAATCAGTCCAGGCAAAAACACAGCTTCAGAAAACCAAACTGAGAGCACGGCCAGAGGGACAGCAGCCGTCTGCGATCACTGAGAGAAGACGTGACAAAGGAAATGTGGACAAGctcacggtggatccagaaaCACAGAGTGAACAGCAGGAGAATGgctttaaaaagacaaaagtcAAGCACAGGCCATCACGGAGCGAGACGCAGGCTGGTGTTCAGGTTCTGTCGCCAACAGACACGACCACGCACAGACAagaacaatcacacacagaaacacactctgCTCCTGTTGGTGCAGGTATTTCAAGCTGTTTTTACACCGTCATACCTGCGAGAAGAGAAGACTGTAAGTTCAGAGTGTGTGCAGAAGATGCGTGAACCTCTACTCCAGGTGCCCCGATGCCTGGGAGTGCCAAAGTGTGGAGCTGGCCGAAGCTCAAGCGAGGCAGAGAGCAGAGATGAAGAAGAGtgtgaagaagaggaggaggacgcGGATGAATTTCGTGCTCCCATTGAGCTGCTTGCAGAGTTCCTAAAAGCTGTGATGGAAAAGAAGTACACACTCGCCAAGAAACTCTGCCAAATGATTCTTATTTATGAACCAGAGAACCCCGAGGCCAAACACTTCCTTCCTCTCATTGAAGAGAGACTACTGATAGAAGAAGCACAGGAAGGCTCCAGCGGTGAAGACGACAcatctgatgatgatgatgatgatgatgatgataatgatgatgatgaaagcagcagcagtggtagtggtgatgatgatgatgatgatgatgatgatgatacagACACATGTACTGATTCAGATGGAGATGGCAGAAAGGAGGAAGACATTAGCCAGCGGTGAAGGGTTTCTCCTCAACAGctgtccaaacctgttccagctctatggttttaatagattttgtgttttttgtctgcACTTGTGTGATTATTATAAGTCCTTCACCACTCTTCTATTTTTCAGTGTGCCTTTACTTTCGCATTACATCCTTTCTATTTTCACGTTTTCTCTTAGATGTTTTGATTGAgtacaaataaattatatatagtaGGGCTTCAATACTTTTAAGCCACAACGAAACCACaaccaaagaatttttttttaatatgatattacacttttctttttttcttttaaggtGTTGTTACACTTAAAGTTGTTACTTtagcaaaagaaataaagatcGATGATTTTAGTA

Function

NR:

description
glutamate-rich protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945612.2 True 1481 mRNA 0.46 11 3283890 3294512
XM_026945613.2 False 1342 mRNA 0.45 10 3285226 3294512
XM_026945614.2 False 1402 mRNA 0.45 10 3283888 3294512
XM_034311243.1 False 1225 mRNA 0.43 8 3286696 3294512

Neighbor

gene id symbol gene type direction distance location
ssb ssb coding upstream 41915 3233539 ~ 3241973 (+)
phospho2 phospho2 coding upstream 51160 3229722 ~ 3232728 (+)
LOC113545972 LOC108272174,LOC108271666,LOC108262055,LOC108271668 coding upstream 59714 3219340 ~ 3224174 (+)
LOC113545949 LOC108271656 coding upstream 102499 3168038 ~ 3181389 (+)
ppig ppig coding upstream 118139 3152768 ~ 3165749 (+)
gad1b gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324 coding downstream 2802 3297314 ~ 3337934 (+)
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding downstream 83002 3377514 ~ 3391569 (+)
sema5bb LOC108271639,LOC108430840 coding downstream 153638 3448150 ~ 3515083 (+)
LOC113545865 NA coding downstream 246297 3540809 ~ 3544535 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding downstream 294555 3589067 ~ 3613541 (+)
LOC113545973 NA non-coding upstream 65177 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 72957 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 131374 3152314 ~ 3152514 (+)
G20807 NA non-coding upstream 332010 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 335042 2948610 ~ 2948846 (+)
G20868 NA non-coding downstream 37250 3331762 ~ 3353685 (+)
LOC117599318 NA non-coding downstream 85379 3379891 ~ 3382596 (+)
G21136 NA non-coding downstream 354819 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 359239 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 372233 3666745 ~ 3666972 (+)
LOC113545950 NA other upstream 90427 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 219861 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 293407 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 295013 2988803 ~ 2988875 (+)
trnaf-gaa_10 NA other upstream 297455 2986218 ~ 2986433 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other downstream 45934 3340446 ~ 3367287 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 255713 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 285236 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 434140 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 980561 4275073 ~ 4327860 (+)

Expression


Co-expression Network