cldn10a (cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622)


Basic Information

Item Value
gene id cldn10a
gene name cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4034071 ~ 4039284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945639.2
TCCACAACGCATCCTCCTGAACCACATACTGGAAACACTGCTATCCTGCCATGTAGTGACCATAACCATTCCTGACTACTGCTTCCTATAATAACTTTCGACTGGCACTATCGAATTACTGACTGCTAACTTCAAGTGATCTGGCTTTGTTCATATTTGAGCTCTTCAGGCTGGGAAAACTATGGGGAAAATGGTTACGGAGATTGTTGCTTTGCTACTTAGCATATCAGGCTGGGTTCTGATCTCCTCCACACTGCCCACTGACTACTGGAAAGTGTCCTCCGTAGATGGAACCGTAATCACTACAGCAACCTTTTGGTCCAATCTCTGGAAGACATGTGTGACAGATTCGACTGGAATCTCCAACTGCAAGGACTTCCCTTCCATGCTGGCTTTAGATGCTTATATCCAGGTGTGTCGTGGGTTGATGATCTCTGCAGTGTGCCTGGGTTTCTTTGGGGCCATTCTGGCCCTAGTTGGAATGAAATGCACAAAGATAGGTGGCTCTGAGACTACCAAGGCCAGGATTACCTGCTTCTCTGGACTACATTTTATCCTCACTGGTGTCTGTTCATTGGCAACATGTTCACTATATGCTCACAGAATAACCTCTGAGTTTTTTGACCCATTATTTGTGGCACAAAAGTTTGAGCTGGGGGCTGCACTGTTTATTGGATGGGCAGGAGCTATCCTTTGCTTTCTGGGGGGCAGTATCTTCTGCTTCTCAATGTCAGAGGGCTTCAGCATGAGAGAATACACTTACACCGGAGTCAACTCTTTCATGACAACTCGAAGCAAAAATGCCAACAGTCCTGCAAGTTCTGAAAAAGATGCAGCAGATCAAGGCTACTCTGTGAGGCAGTTTGGGAGGAATGCCTATGTGTAATATACCTCCACAGGAAAATTCTGTACAAAACTGACACTGATGCAGCCAATAAGAGCAAATGCCTATATTATAGGTTTGTAAGATGGACATGCTTTATGCACAACCATAATCACTAAGGGAAACTACCACAGATAACACATAGACCATCACTAGAGCAAGAAGATCTTAAGGCATTTCGTACTTTAGCATTAGTCTTTCTAAGAGCTAATCTACTAAGTACTAACTATCTAACTTTTcatatctgtgtatttttagatGTTTACAGATATTAAAGAGTTTGCATAGATTGCCCGGTCTGGAGTTACTAAAGCtttctttgtaatttttggGACGAGTGGGGGatgactggggaaaaaaaaggataataaaAGGCAGCATATAGTGAAGATGGAATGAGTCTTCTGTCTTTAATGGATGTGCCCTTTGCTGAATTGAGACCCAATAACCAAGTGAAGTGATGACAGACATTTATGATGTTGGTTCCTGTTGCGTACCTCCGGCTCCGGAACACGCTGTCTAGATGCGGAAATTAGATCAGCCTAGTCACCTATTCTTCGGGACCTAGCATCTGTCTCCACCTCATGATCAATGGAAACCCTAGACTTTGACCCCTGCTTCTCATAGATTTCTGGTGCGTTCCAGAGCTCTGCTGGGCTGGCAGCATGGCCTTTCTTTCCACCCACATGTTTCTGTGTTAAGTATTCCAGTACTGAATGTAGTGTTTAGTTATGTAATCTAATATAGTACACTGTTGTTGTGTTTagttatgtaatataataaagtacattatacttttaa

Function

symbol description
cldn10a Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Orthologous to human CLDN10 (claudin 10).

NR:

description
PREDICTED: claudin-10-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945639.2 True 1684 mRNA 0.43 5 4034071 4039284

Neighbor

gene id symbol gene type direction distance location
si:busm1-52i16.2 LOC108272376 coding downstream 8093 4023790 ~ 4025978 (-)
si:ch211-181l5.2 LOC108273231 coding downstream 25494 4004622 ~ 4008577 (-)
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding downstream 75252 3938000 ~ 3958819 (-)
tubb1 tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746 coding downstream 188347 3839963 ~ 3845724 (-)
LOC113545812 LOC107667744,LOC107582924 coding downstream 210788 3817517 ~ 3823283 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding upstream 319836 4359120 ~ 4365171 (-)
LOC117596284 NA coding upstream 408083 4447367 ~ 4447479 (-)
LOC117596286 NA coding upstream 419052 4458336 ~ 4458447 (-)
LOC113545959 NA coding upstream 436568 4475852 ~ 4483914 (-)
igfbp2a LOC108273244,LOC108438161 coding upstream 551100 4590384 ~ 4618467 (-)
G21382 NA non-coding downstream 24731 4009131 ~ 4009340 (-)
G21377 NA non-coding downstream 34435 3993879 ~ 3999636 (-)
G21358 NA non-coding downstream 101503 3932136 ~ 3932568 (-)
G21306 NA non-coding downstream 248517 3785140 ~ 3785554 (-)
G21303 NA non-coding downstream 319028 3713299 ~ 3715043 (-)
LOC113545971 NA non-coding upstream 5280 4044564 ~ 4062409 (-)
G21400 LOC108272755 non-coding upstream 37844 4077128 ~ 4077827 (-)
G21341 NA non-coding upstream 71998 4111282 ~ 4111654 (-)
G21333 ddx3x,LOC108272611,LOC103389314,LOC100708206,LOC101487926 non-coding upstream 83711 4122995 ~ 4127844 (-)
G21417 NA non-coding upstream 107452 4146736 ~ 4153896 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 256083 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 297185 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 662917 3348308 ~ 3371154 (-)
LOC113545802 NA other downstream 1400391 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 2211403 1756160 ~ 1822668 (-)
G21434 NA other upstream 217384 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 292815 4332099 ~ 4332171 (-)
obsl1a obsl1 other upstream 773991 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 1072178 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 1366683 5405967 ~ 5414086 (-)

Expression


Co-expression Network