LOC113545959


Basic Information

Item Value
gene id LOC113545959
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4475852 ~ 4483914 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945646.2
GGCTTAAGGTGTAGGGTAGTGAATAGAAGAAGGCACATCACTGTCACCAGTCTATCACTTTGGATCGTGAGaagcagAAATAGACCGGTTTCAAAATGTACTCCAGCAAGACACAGCAATCACCAAAATCTGGTGTGAGTCCCAGTCAAGCAGTTGGAAGCACTTTGATGAGGAGGAAAGCTCTTATGGAAGACAACAGCTGGATTAAGAAAGATAGAGAAGATGAACCAGAAGACAAGCCTGCAGATGCTAAACAGAGCAACATGGCAAACCTAAACACCTCAGCTAGCTCATTCACTAAGAGGGTCAGCGGGAGTCAGGACTTTCCAAATAAAAACACCATTCCTACTGCCACAAAACCACCAGTCCCTGACAAgAAACCTGCTCTTACAACACAGTCAAACAGTTTTACAGCTCGGGTGTTCTCAGGTGCAAACTCAAGCGAAAAACTGCTCAGCCCTGTTAAAAAATCTATAGATGAGAAGGATGAGAAGCTTCCAGTGTCAGATCCACGTAAAGAAGTCTCTGATGGcACTGAGAGCAAAATTAAAATCCCTATTCCTCCATCAACTACAGTTACTTCAGTCAGAAAGACAACTGAGACCTTCACAACCCCAGAAAAAACCTATTCTTCCTTTGCAAGCAAAACAGAAACCTATTCAAAGAGCCTGAAAGAAAGcCCCCAAAAGAGTCCTCTGGATATGAGTTATAATACTCCTCAGCGAGTAAACACTACTGAaATGACAGTTAGCCCAACTGTGAAATCGATTTCACATGTATCCCAATCTCTGCACGCACCCATGAATCCAACACCTGTACCTTCAACAGCATCCAGGATTGTCGGTAAAAGGGATCTCTGCTCATTCTGTGCTAAAAGCATTATTGAGGGAGAAAGGATTATTTTGGATGACCTTCAAATCTTCAGTCACACATTCTGCTTCAAGTGTGACACGTGCTATCGTGCTCTTGGAAATCTGGAGGCAGGTGACAGTCTGTGGGTGCACAAGGGAAGGGTGACATGTGCAAACTGTTACATAAAGACAAAAGATCAGTGGTATCGCTGAagacatgaagtctattttggaCCCTTGAAACATATATACTAACCTTCTTGGTATAAATCAAAACATAATTCTTTCTGTAACATCTAAATGGCATCTTTGAATAATTTCTTTGGCGTATTTATCTGGGAAGAAAAGATGTATATgctctttttgttttctatatAATGTTTCTGGAAagagatgtatgtg

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945646.2 True 1253 mRNA 0.42 14 4475852 4483914

Neighbor

gene id symbol gene type direction distance location
LOC117596286 NA coding downstream 17405 4458336 ~ 4458447 (-)
LOC117596284 NA coding downstream 28373 4447367 ~ 4447479 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding downstream 110681 4359120 ~ 4365171 (-)
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding downstream 436568 4034071 ~ 4039284 (-)
si:busm1-52i16.2 LOC108272376 coding downstream 449874 4023790 ~ 4025978 (-)
igfbp2a LOC108273244,LOC108438161 coding upstream 106470 4590384 ~ 4618467 (-)
inha inha,LOC107586362 coding upstream 233496 4717410 ~ 4719627 (-)
nufip1 nufip1 coding upstream 726582 5210496 ~ 5219287 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding upstream 780998 5264912 ~ 5324988 (-)
atg3 atg3,LOC107659953,LOC107752093,LOC107581307,LOC107551927,LOC107713119 coding upstream 862195 5346109 ~ 5393521 (-)
G21557 NA non-coding downstream 13836 4460931 ~ 4462016 (-)
G21555 NA non-coding downstream 25074 4450462 ~ 4450778 (-)
G21554 NA non-coding downstream 29637 4445803 ~ 4446215 (-)
G21552 rabl3 non-coding downstream 32402 4442856 ~ 4443450 (-)
G21546 NA non-coding downstream 46511 4427193 ~ 4429341 (-)
G21592 NA non-coding upstream 56313 4540227 ~ 4546709 (-)
LOC113545826 NA non-coding upstream 66657 4550571 ~ 4569672 (-)
G21693 NA non-coding upstream 215910 4699824 ~ 4700057 (-)
LOC113545947 NA non-coding upstream 279995 4763909 ~ 4765538 (-)
LOC113545964 NA non-coding upstream 291374 4775288 ~ 4777331 (-)
trnaf-gaa_14 NA other downstream 143681 4332099 ~ 4332171 (-)
G21434 NA other downstream 218765 4256668 ~ 4257087 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 697864 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 738966 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 1104698 3348308 ~ 3371154 (-)
obsl1a obsl1 other upstream 329361 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 627548 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 922053 5405967 ~ 5414086 (-)
romo1 romo1,LOC102788570 other upstream 1048123 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 1472725 5956639 ~ 5965183 (-)

Expression


Co-expression Network