LOC113531657 (LOC108272136)


Basic Information

Item Value
gene id LOC113531657
gene name LOC108272136
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16436840 ~ 16454566 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298008.1
ATCACACTCCCAGTCTCCCCACCACCACCGCTAGATCACACTCTATATATGCAATGCTGAGAAAGACTCTATTCAACATGTTCAACACTATAACAACTACTTCTATTTCGCTCATTatgtttatggatttatttGACCTTTAACCTGTGTATGGAACCGACTCTTCAGTAGGATACCGCCAAATCATGTGGAAAATATGAGTGAAGAATTTCGGGAGCATTACATGAAGAGATCCCAGATCCAAGCCCGGTGTCTTCCCAATGGGCAATTAGGTCACCCAGTGCCTGGAAAGTGCTGCCAGAATCAGGGATGTAAACCACCTATTTTCTCCAAAGCAAGATCAAACCCAACACATGGTCACGGTTTAAATAATTACCTGAAGAGACACACTAAACAAAACCTAAGGCCTGCTAATTCAGAACAGCACCCATTGAAAAACCATAGGAAGGAGGTACTGACACAATGGGAGGAATCACAACTGACAGAGGTCATGAAACAAAAACCATGGAAGGacataaaatgtaaagagaGGTCTATGCAATGGGAGGAGCTTGCACAAGGAGATCAGGAAGAACAGGAAAATATACTAGAACAGGGGGATGAGTTGGGCTGTGGAGAGGAGCTGGCACAGGGGAATGGGTTAGATTGGCAGGTGGGTTTAGAACCGAGGGAGGGATTTAACTTACGTGAAGGACAAGGCTCAGCGAAGCTTCTCTCTGACTCCTACAATAAAGTAGAGGAGGAAATGCAAGGAGTGGAGGGACAGCTACATATGgaagaggaaaggaaggaagtgtgtgtgaatggtaaAACAAGATCACTTGTGACCCCTGTTGATTCCATGCTCTCATCTACGTACTCATTTCATAAGCAAATAGTGCACAATGATGgaataaaccaaaacaaaactcGGACACTGGTAAAGTTGTCTGACAAAACATATACTAATGACGTGTTCACTGATCAAAATTTTCTAAATGGATTTTACCCAAATAATAGTTACATAAATGGACTCAACACAGATGCTTTGACCCCAGACCGAACTGACATAGTCACCGTGTTCCCAGAAGCGTGTGATGCAGGGGAGGCATTGGCAGATCCTGATGGCTTTTCAGAGTGTGATCTCTTTGAACACAATATTGAACCCTCTTGGAAGTCAGGGGTTGAAGATGTGGGTGACTGCGGAGATACAGTGATGCTATCTGTGGAAGAGGACTCAGAGAACTCGAGTGGATCACTAGCTACTTTTGGGGAGGGGTGCATTGAAGAGGTAGAGGAACAGGAACAACAGGAACAGGTGAAAAACCTTTCATTGTCCAGAAATTCTAATTCAGATCCAAAAGTTTATCCAAAATCTGAGATAAAAGCTGAAACACTCTCTGAGTTTTCTGATCATAGCTTCTCTTCATTCTGCTCATCTGAGTCTGAGGTGACCTTAGATGAAGTGGAAAGAACTGAGACCAAACAAAATCATGAAAATGCTCAGGATGGGCCAGAAACTGAGCAAGCTGTATCATCTGAGTTGAAAGCAGGTGACTGCAATACAAGTTCTACACCAACTGTGTCTTCCATTGTTTCTCTACAACCTGATGAGCAAAAGTCACAGCAGAAGCAAGAAGACAGTCAGGATGGACAAGAGGTAGAAAGGAGCAGACATTCTATGTGGTAAGACAGTTATGGCAACAAGATGTTAGAAGAGCATGTGTATGAAGAAACTGAGCCAAAGTTCCAAACCAGAGACTTTTTGCAGACCAGGAAGTACTTAATGACGCGTTCCATATCCGTGGAAACCCCCAGACTAGACCCACTGAGTACCACAATATCAGGAAAAGGACGTTTAATGCTACACCCACAGTCATACTACACACGACATAATTACCTTGGAGATAGTTTGCCTGCTTTGACTGGTTCATTAGGATGTCTCTCACCAGGAAGTCCTTGCCCCCCTACTGTGGACATACCACCTCCTTTTGAGCTGTCTTCCATCACAAGACGACCAATCCGAAAGAGTACACCTGCTCTGCCAAGTGATGTGACTGCCTGTAATAGGAAACTTGACTTTGGCCTTAAACGTTACTTCTTACCATTACGGTTTCTGAGGAAAACTGAAAGAAGGACAGATAGTCGCTCAGTGTCATCTCGGTCCTCTTCAGAATCAAGCCCACAGGGATCTTGCCGGAGGTTAAATTTAGTAAGGCAATGTACAGAAAGCCCTGAGCTTCACAGGGCACATGACAGTTCCGTACCATCATCCCCATCTTCTCTTCGTTTACACAAGAACATGCACAGGCAAGGTGTAAGCACTCCTTTGAATAACAATTTTGGGTCAGCTAGTCCCAACTCACGGGATATGTTAAGAGTGGAGTCAGATGACTTGATCCATTCCCTTTTTGTACAGCCCTTCCCACTATCCAAACCTCGGTCTTTCTCTTCCCCCAATGTGGACTCGTCAATTTATGAGAATGTTTTAAACACAAGTCCCCACTATGAAAATGTGCACGTCCGCCTCTTATCACCCTCCAATCAGAATCAACGAAACCAGGGTTCAGCCAATGACACTGACGGTTACGTGGATATGAGCAGCCTACCAAGCTTTCAGAGCAAAAGCTCAGCAAAcgagcaagagacagagagTGCTTACACAATCTGCTCTCCTATGGTGAGGTCAGATGGAACAATGAGTGTATCTGTAGGCGTAGGGTGTAcaaaagaggaggagaaaaaagcaCCTGAAAGACTGACTGTTAATTGTTCTAGAGCATTTTACACTGTGAAAGAGCTGCTGGACAGCGAAACACAgCATGTAAAGATTTTAAGGCTTCTAATTGAGACTGCAGGTGCAGATGAGCAGCTGATGAACCTTTGGAGTGATTTACCTGCAATTTGTTCACTCCACCAAGACCTCCACACTCAACTGGAAAGCCGTATTAAAGAGTGggATCAGAAAGAAGGCATTGCTGACATCCTCTTGGCCAAGAAAGCAGagttttcagttttctcttCCTTTATTAGCCAGCATGACTCCAAAGTGAGGACTATGGAGCAGATGGAGAACACACAGCTGGACATCAGTGCTCTCAAACAGCAGTTGCTGCAAGTGATAGCGCGAGTCCTACAATACCGCATGCTTCTAACAGATTACAAAAATAATCTTTCACTAGACGCCAGAGAGTATGAGGATATACAAGCTGCTCTGGTGATGGTCTCGGATGTAGCTGATCAGGCAAAGGACAGCCTCAAAAATGGAGCAGATCTCCTGCGTCTGATCAGTATCGAGCACAGTGTTCAGGGATTAAAGAACCTGCTTCAGCCTGGGAGGGTGTTTGTGAAAGAGGGAACCCTGATGAAGGTCAGCAGGAAGTGCAAACAGCCACGTCATCTATTCTTGATGAGTGATATCATGCTTTACACATACCCCCAACAAGATGGCAAATACAGACTCATTAACACTTTAGCACTGACAGGGATGGAGGTTACTAGACATTTGACTGAAAATACTCAGAATGCCTTGAAGATTGAGGTGAAAGACATTAGTATCACACTGTTAGCAAGCTCTTCTATTGAGAGGGATGACTGGTTCGTTACACTGAATCGGACTGTAGCTGACCTTGGCTCATTATTGATAGAACCCCCTGGCTCTTTTGAGGTAGAATACTTAGACAGGGGTATGTCTTGGGAGAACGCACCGCCTCTTGTCTCCGTTTCCCAGGTAGCCGTGTGTATGAACTGCCCCGTCCATTTCAGCCTCACACACCGAAGGCATCACTGCCATGCCTGTGGAAAgGTTGTGTGCAGAGACTGCTGCAGGAACAAAGTCCCCCTCAAATACATGAAAAACAGGCGAGCCAAAGTGTGTAATAAGTGCTACAGTGAGCTTTGCAAGAATGAAGGTGATACTGCAGTGCTAATGGAAAGCTCCAGTCGTCCACTGTCTGCCGTTTTCCAGAACATTCACCCAACAAGTCTGTGGAGGAGTCGCAAAGGCCACTTATCCTTTAACCAGGTGACAGGATCAGAGGGTGAGATGAGTGGGACTCTGCAGAGGAGTCGAAATAGTAAGCGAAGCTGGAGGAGTCTGTGGTTTCTTCTCAAAGATAAAGTGCTTTATACATATCCACAGCCTGAGGAGAGGGTTGCATGTGAGTCCCTTCCTCTGCTAGGTTTCTCAGTAAAGTCTGATAATGAAGGAGAGAGCAGTGTGTTTCAGCTCTAccacaacactacactctattACACATTCAAGGCTcaggatacacacacagcacagagGTGGGTGAGTGCCATGGAAGAGGCCACAGTCCTCTAGCAGCTGCCATCTACAGAGGGCAGTTATCTTTTTCTGACTATAATACCAAATGACTGTGGAATCCATGAGGACCGTAATTTTTTCATCCTACAGTGATACACACATCTTTGATGCCAAAGCCATACTATGAAGAACAACACAGACGCAGTCCAGCAATAACTGCAGGCAAACCTAAAGTCAATaaatactgtattgtatttttaatttgttatacGTTTGCAATTGTTTATACTGTAAAGCCCAGTACTGGAAAGAGTGCAAAACACACTAACTTGAGTAAAAATgctgctactgtagtaataattcacttaaGTAAAAGTAGTGATGAAGAAAGTTACTGAATTAAGAGTAAATAAGTCATCTGGTGAAAAACTACTTGAGTAATTACTCTTACTTTTACGTACTTTTCcaaattacttttttatgtCAACAATTAAAACAACTAATATGAAAAAGTTCTATATCTGAGGAATGCCTTTTTGAACAATCGTGTTAACTAACCAAGTGAGTTATGCTGAAATAAACACCACCTCTATTATCAACAGTGTATAAAGAaaggtaatgttagctggctagctaccTTAGCCAAATGCTGTTGAGGGTTCTGTAGCTTGCTAGTTTCATTAGGTAGCTGgctcatgttaattcatgcATGTTCCTAGCTACAcagttagctatctagcaaagGTGCCCCTTACACATTGAGCCTCATTTATTAAGCTGGATgtgaatggatttatttttaaatcattcgtacaagcatttacacaagaaatttagtATTCACAAAAATCCCATAAATTCAGAgtgtttgtaaatttatttataagaagactaactaatgtaaaccagTAGTTGTAAATCatgatcagcttcaaatcatataatttgcaaaggagttactgcat

Function

NR:

description
PREDICTED: FYVE, RhoGEF and PH domain-containing protein 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298008.1 True 5214 mRNA 0.43 22 16436840 16454566

Neighbor

gene id symbol gene type direction distance location
prkcda LOC108271968,LOC108440644,LOC107582675,LOC103030273,LOC107667398,LOC107721176,LOC107673500,LOC107712078 coding downstream 6744 16419260 ~ 16430096 (-)
ddi2 ddi2,LOC102794950,LOC107721177,LOC107673502,LOC107667352 coding downstream 20021 16406576 ~ 16416819 (-)
si:ch73-15b2.5 LOC108272055 coding downstream 30358 16400949 ~ 16406482 (-)
LOC113541386 cf125,uqcc2,LOC108440614,LOC107580205,LOC107667355,LOC106565356 coding downstream 38439 16394241 ~ 16398401 (-)
frs3 frs3,LOC107667350,LOC107584505,LOC107568202,LOC107673473,LOC107712068 coding downstream 50620 16372782 ~ 16386220 (-)
rad54l rad54l coding upstream 21859 16476425 ~ 16488929 (-)
LOC113523777 artn coding upstream 37115 16491681 ~ 16519158 (-)
st3gal3a st3gal3,LOC108412691 coding upstream 80202 16534768 ~ 16586246 (-)
kdm4aa kdm4aa,kdm4a,LOC108412690 coding upstream 134781 16589347 ~ 16622597 (-)
ptprfa ptprf,ptprfa,LOC107709086 coding upstream 171088 16625654 ~ 16832868 (-)
G28508 NA non-coding downstream 77319 16358139 ~ 16359521 (-)
G28515 NA non-coding downstream 107419 16329108 ~ 16329421 (-)
G28385 NA non-coding downstream 170085 16266556 ~ 16266755 (-)
G28384 NA non-coding downstream 171680 16264924 ~ 16265160 (-)
G28383 NA non-coding downstream 172598 16263614 ~ 16264242 (-)
G28537 NA non-coding upstream 7536 16462102 ~ 16489915 (-)
G28779 NA non-coding upstream 116224 16570790 ~ 16571524 (-)
G29119 NA non-coding upstream 599522 17054088 ~ 17054656 (-)
G29167 LOC108272186 non-coding upstream 938892 17393458 ~ 17394467 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding upstream 940200 17394766 ~ 17396199 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 301125 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 941631 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 975839 15456635 ~ 15461001 (-)
G27843 NA other downstream 1137821 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1560850 14872948 ~ 14875990 (-)
G29158 NA other upstream 818389 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1017764 17472330 ~ 17529315 (-)
G29263 NA other upstream 1494591 17949157 ~ 17949718 (-)
G29279 NA other upstream 1616421 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1693662 18148228 ~ 18195628 (-)

Expression


Co-expression Network