sema5bb (LOC108271639,LOC108430840)


Basic Information

Item Value
gene id sema5bb
gene name LOC108271639,LOC108430840
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3448150 ~ 3515083 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298857.1
GCAGGACTCTGTTGTGCAGGGATTGAGCAGAGCACAGGAGCAGCTCATAACACAgAGGTGTTGATGTGTGCTGGACGCTGTCCACTGGAACGAGTCCATGCTGACGCTCGGCTGGTGACTCCCAGTTTTGTGGTAAAGGTGTGGTTGTCATAGTAACCATGCCTGCGATGTCCGTTTATTCTCCCGGACCTTTCATCGTCCTTCTCTCCGTCTCCCTGTATCCACTCCTTACATCCCAGCATtccctgacctctgaccccaacCTCGTCACTTCTCATGCTCAACAGTGCAGCGTGAAACTGCATCCTGTTACGTCTTATGAAGCTCTCAGTGCATGGCTCTCATCCTTCTCTATGCCTGGAGTGAGTGATTACTCCCAGCTCGCTTTAGACCTCAGCAGGAACCAGCTGATTGTTGgagccagGAACTACCTGTTCAGACTGAGTTTGGCTAATGTTTCTTTACTTCAGggcATGGAGGTTGGAGTGGACGAAGACACACGCAGATCTTGTCGGAGTAAAGGGAAGACAGAGgAAGAGTGTCAGAACTACATGCGTGTGCTCCTCCTGAGCGGTTCTCGTCTCTTCTCCTGTGGCACTAATGCATTCTCGCCTGTCTGCACCGCCCGCTCTGCCTCCGATCTCGCCCATGTGATCGAGACGGTGAACGGGGTCGCCCGATGTCCTTATGACCCCAAACACAATTCTACCGCCATGATAACGGAAAGTGGTGACCTCTATGCTGCCACAGTCATTGATTTTTCTGGCCGTGACCCCGTGATCTATCGCAGCCTGGGGAGCATGCCTCCTCTCCGCACAGCTCAGTACAACTCCAAATGGCTGAACGAACCTCAGTTCATCTCAGCGTACGAGGTAGGCCGCTTCACCTACTTCTTCCTGCGGGAGGTGGCGGTGGAGGAGGATTGTGGGAAGGCGGTTTTCTCTCGGGTGGCGCGGGTGTGTCAGAACGATGTAGGCGGTCGGTTTCTGCTTGAAGACACATGGACAACGTTCATGAAGGCCAGATTGAACTGCTCACGCTCAGGTGATGTGCCTTTCTACTACCACGAGCTCCACAGCACCTTCTTCCTGCCAGAGCAAGACCTCATCTACGGCGTCTTCACCACCAATGCTAACAGCATTGCTGCCTCCGCAGTGTGTGCCTTCAACCTCAGTGCCATCACTCAAGCCTTCAATGGTCCATTCCGCTACCAGGAGAACCCTCGAATGAGCTGGCTCTCCACCCCGAACCCCATCCCCAACTTTCAGTGTGGGACAGTAGGTGATAGTGGCCCTGGTGGAAATCTAACAGAACGAAGTCTGCAGGATGCTCAGAGACTCTTTTTGATGAGTGAAGTCGTGCAGCCTGTATCTGTTGACCCCTTGATCAGCCAGGACAATATGCGCTTTTCCAAACTGGTTGTGGACATCGTGCAGGGCCGTGACACGCTATACCACGTCATATACATCGGGACAGAACATGGCACCATTATCAAGGCACTCTCCACATCCAGTCAAAATCTGCGTGGGTGTTACCTTGAGGAGATGAAGCTCCTTCCAGCAAATCAGCAGGAACCAATCCTTAACCTGCAGATCCTGCAGAGTGACAGGTCTCTATTTGTGGGTTTGAGCAGCAGAGTTCTGAAGATCCCACTGGAGAGATGCTCCAGCTATGAAACCCAACGGGAATGCTTGTATGCGAGGGATCCATATTGTGGTTGGGACAGGAAACAGAGACGCTGCACTACGATTGAAGCCAGCTCCAACATGAGCCAGTGGAGCCAGAACATCACACAGTGTCCTGAGCAAAATCTTACCCGAGATGGCGGCTTCAGCCCGTGGTCATCGTGGAAGTCATGTACCCATGATGACGGAGGTGAAAGTTCAAGTTCCTGTCTGTGTCGCTCTCGTGTGTGTGATCACCCAGTCCCTCAGTGTGGGGGGGCTGAGTGTGTGGGACCCACAATGGAGGTGACCAACTGCTCCAGaagtggaGGTTGGACTCCATGGTCCTCCTGGGCTCCGTGCAGCACCAGCTGTGGTGTCGGGTTCGAGGTTCGTCAGCGTTCATGCAGTAACCCCACCCCTCGACAtggagggagagtgtgtgtaggcCAGACACGAGAAGAgcggttatgTAATGAGGACTCTGTGTGTCCTGTGCCCATGTCCTGGGCTCAGTGGACCTCCTGGTCTACATGCACAGCAGTGTGTGGCGGCGGTTTCCAGTCCCGAGTCCGAACCTGTGAGAATGGAAACTCCTGCCCTGGGTGTCCTCAGGAGTACAGAACGTGCAATTTGGAGGCATGTCCTGAGGTACGTCGATACACACCCTGGTCTCCATGGTACCCGGTGAACGTGACAGTGGGCGGAGTCAGACAGGAGCAGCGTGTGAGACACACCTGTCGAGCGCCGCTGGCTGACACACACCTCCTCCAGCTGGGCAAACGCAAAGCGGAGACGCGTCACTGCCCGCCTGCTGGTGGAGCGCCAGGATGTGAGACTGACGATCTGGTACAAGACTTAGTGAGTGTGGCACAACCTTTGACCCCAGTGCAGGGGGTCACCTGGTTGCCATGGGAGCCATGGTCTTCATGTTCCAAAGAGTGCTCTAGAGGGTTTCGGACCCGTAAGCGCTTGTGTGTCAGTCCTGATGGCAAAAGTTCTGCGTTCCTGTGcagtggaacaccagtggagtaTCAGGACTGTAACACACAGCCGTGCCCAGtgaagggggcgtggtcaTGCTGGTCTTCCTGGTCTGAATGTTCTACTTCCTGTGGAGGTGGGCATTACCAACGCACTCGCACTTGCTCAAACCCTGCCCCATCCTACTCAGGGGACATCTGCATCGGTCTGCACACTGAAGAGGCTCTGTGCAACATGCACGAGTGTGATgGTGGATGGGGGGTGTGGTCAGAATGGACCGAGTGTGAGGATGAGCTTCAGTACCGCACTCGAGTTTGTGAgaaaagccccgccccctgtaAAGGGAACCACACGGATCAGAGGCTGTGTCCTCCAAAAGAGAGTGCAGTCGGCTCATCAGGAGGGAAGAAAGGGTTAAACTGTGGAGGTTTCTCCCTGTTCCACCTGATCCTGACGGGCGCTGTCTCCTTCCTGGTAGCGTTGCTGGGATCCGTTCTTGTTTACGTGTTCTTTCAGAAGGTCTATAAACCCATCCAGGAGCCTGCGGTGATCCATCCCAACACCCCCAACCACCTtcaccacaaacacaacaccaGCACGCCAAAGAACGAGAAATATACTCCCATGGAGTTTAAGACGCTGAACAAAAACAACTTGCTGCCAGACGAGAGCTGTAACTTCTACCCTCCTCCTCCGCCACAGACGAACGTCTACACCACCACATACTACGCTCCTCCATTGGGCAAATACGATTTCCCGTCTTTAGACTCACCCTGCAGGAACTACATGCACAGCTGAACCCAGACTCACACCTTCTGAACTGTGTGTTATCGCAGGTGCAGTGATGCAGCGTTAGCCGTGAGGCATTGGAGTGTGTGGATGTTCAAAAGAGCTCAGAGTTCTTAAAACTGGAAGGAAAAGATaacaaggataaaaaaaatctgaggatGTGTACTGAGTGCTTTACCTTGTTCTGGACATTTGGACAAGTTGATTGATGGATGGTGGTCCAAAAGGCATGAACACACCACCACCGGAACGGAATACGGAAACTTGTCCAAATGCAACTGAACCAAGACAGTCTTGGGCAGGATACACAGATCTTTGAGTCTTCCACAAAGACAAAGACCTTAGGATGGAAAGTTCTGGTATTCCAGTCCTCACTTTGCTCTCAGCCTGATAGGACTTGGGATCTGGCATGGTGTTCACACTAGACAGTGCTGTTTTGTTAATTACCATTGTCCTCTGAGCACCAACAATTGATCCATTCACGCTTTGACTGTGCAACTGCATCACATTTAATTCATGAATTTATGAAGATGCTGTGATGATGTAAGCAGCTGTACACTTTTTTTAAGAATCTCACTACTACTTCATCCACTACCTACACATAAACGTGAACATCCCTGGGGTCTAATGTAGCTTTTAGCATTAAATGGAGCCTCAGGATGTATGTAAGATTCACACTttatacacagatacacaattgattttttaaaattttattaaaaaccaaaTCGGTGTTGttaactcacactcacacatacatcatACACCCTACTGAAGATACAATGCAACttattgtacacacacacaaacacacacacaaacaccaaaaagTATGgtatattatgtgtgtataaaaatgagCGAGTGTGTATGGGCGTCTGTGTGattgtgatttctgtgtgtagacttttattaaattattgtatatacACAGTAGGAGCCCAGAAACCAAACTGACATtaagtgtgttacagtaaaacgATTGTGTTATTACAATGTAGCTAACAGTGTAACtacactgtaataaacattGTGTTAATTAGGGGGTCATCGATACCAACACTGATACCATACTCGTACACACTCGTATTTGACAAAAATAGTGTCCACATGATACTATGAGACGTAAGGCATGTGTACGTTGTTGTGCTAATGAACCGAGGACTCAGAATGGCAGTGATCTGGATGTACAGTCAGGTTCATAAGTAtatggacagtgacacaattttttgtacttttgcctctgtacaccaccacaatggatttgaaatgaagcagtcaagatgtgaatGACGCGTATACTTTCAGTATTAATTCaagaaaatattgcattaatagtttaggaattacagccatttttttttacataatccctccattttcacaaaagtaattggacaaactaacctaatcataaatattaggattattttttaatacttggatgcaaatcctttgcaggcaatgactgcctgaagtcttgGACATCatcatggacatcatcaaataCTGAGTTTCCTTCTTTGAGATACTTTGTCAGGCCTTTACAGCAGCCGCTTGCACTTGCTGCTTGTTTATGGATATTTCTGCCTTAAGTTtagtcttcagtaagtgaaaagcgtgctcaattggattaaggtctggtgactgatttaagaacattccatttccaagctcttgggttgcaaagccattgtggtggtgtacagaaaaTTGTGTccaatacttatggacctgattgTAGGCTAGGTGAGAAAAAATATCTACAGACAATGTTAGGTGAGCGAAAATAATAGCTGTTACCCGGCATGTTGTTCGTGACAATCAGCTGCTTGGGATTTTGAAGCAATGAAAACAATGTTCAGCTGAACAGAAGTGCTTTATCAAAGAGAAACAAATCCTGCTCTTCTCCATTGCAAagtaactaatgtagctagctaatgcacttcatttataaacaactagctaatgttataaAGAACGAGTCTATAGTAGCCTAAGTGCATGAATACACACACGGGCCAGTATTTCAAACAgtgagctaaataaaatgttctgtgatGTCCCTGACTGATTAATACTACTCAGTCATTTTGGTATCAGTATTGGTATCTGTATCCATGAGTACCAATAGACATGTACTCATATCCAGTTTGAGAAAATGATATTGATGCATGCCCAGTATTTCTACTTACTGTGTTTGCAAGGCAGGGACACTTTCCTGTTTCCTCACACTTGATTTCCTTTCTTCCCTTCGTCTCTGAGACAAGTGCAGCCCAAAGCACTTAACACTCACTCGAGGTGAGAGGCTATGAATTACACTAAtaacattttagaaataattcaGATCAAAGTAAAAACTTTCCCTTTGAAGTTCACTGAGGGAATATATTGGGAAATCTTTATTCAAACTGCCAACTGATGATATTGAATGTTAcagcagctgaccaatcagcagcttcgcCTAAACTCACACTGAGTGGAACCACACGCTCACTAGGATCTTAAAACACAATCATTATAAACACACGCTTGCTTGCTGTACagtttcttccttccttcccccCCCTTCCTCTTTCTTCCATACTTACatcctctctctcattcttccattctctctctcccttgcttcttccatttctttctttctttctttcttttattccttcCATCCTTCTAACCATCTGAACATGTGATGTCCCATGTCAAATAGTCAATATGGTATTTTGAAAACAGCTCCATCAACCATGTTATCAGATGGTGACATGACCATCAGCTCACAGGTCAGTGCTGCTCTTGATGGTGACTTGATGCTTATCTAACACTTATCTAACAAACATCACTTGAGCTTATAGTTATGGAACTATATAGTTATATTCTCAACCAAAGGGAAGTGAAGCGTGCTATAAAACAGTATTGGAATGTGGTGTGATGTATTGTATTTCACTCTCTCGGAGACTCCAGCGGTTGTTTGAGCTTCCCTATGCAATAGCGGCTCCTCATCACACCGTCACTGCCTTTCTACACACTGTGAACTTTTGCTATGTTCTATTTTTGTATGCTGCGCATCATAAACAATAAACTTCAAGTAAACCTCA

Function

NR:

description
PREDICTED: semaphorin-5B-like isoform X1

GO: NA

KEGG:

id description
K06841 SEMA5; semaphorin 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298857.1 True 6535 mRNA 0.47 22 3448150 3515083

Neighbor

gene id symbol gene type direction distance location
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding upstream 56581 3377514 ~ 3391569 (+)
gad1b gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324 coding upstream 110216 3297314 ~ 3337934 (+)
erich2 LOC108271660 coding upstream 153638 3283888 ~ 3294512 (+)
ssb ssb coding upstream 206177 3233539 ~ 3241973 (+)
phospho2 phospho2 coding upstream 215422 3229722 ~ 3232728 (+)
LOC113545865 NA coding downstream 25726 3540809 ~ 3544535 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding downstream 73984 3589067 ~ 3613541 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding downstream 119013 3634096 ~ 3649254 (+)
aamp aamp,LOC107750832 coding downstream 152193 3667276 ~ 3681466 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding downstream 171538 3686621 ~ 3704908 (+)
LOC117599318 NA non-coding upstream 65554 3379891 ~ 3382596 (+)
G20868 NA non-coding upstream 94465 3331762 ~ 3353685 (+)
LOC113545973 NA non-coding upstream 229439 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 237219 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 295636 3152314 ~ 3152514 (+)
G21136 NA non-coding downstream 134248 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 138668 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 151662 3666745 ~ 3666972 (+)
G21178 NA non-coding downstream 166898 3681981 ~ 3682254 (+)
G21197 NA non-coding downstream 198224 3713307 ~ 3714991 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 80863 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 254689 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 384123 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 457669 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 459275 2988803 ~ 2988875 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 35142 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 64665 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 213569 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 759990 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 836594 4351677 ~ 4351748 (+)

Expression


Co-expression Network