LOC117596064 (LOC108271622,LOC108271602,LOC108435678)


Basic Information

Item Value
gene id LOC117596064
gene name LOC108271622,LOC108271602,LOC108435678
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6673252 ~ 6674193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299610.1
ATGAACTCAACTGGAACTCTAGTACGAGACACATTCAGCACTGCATTTGCAAAGAATTTCATTTTGACTGGAGTGTGGCTGTGCCTGAGCTATATCAATATTAGCGTGGTGGCAACCTTCTTTAGAAACCAGATCTTTTATGAGGATCCACGCTATATTCTCTTCATTCACATGGTCATCAACGATGCAGTGCAACTGACTGTAACTGTGAGCCTGTTCGTAGTGAGCTACATTTACTACACTATCAATGTATCTGTCTGCTGTGTCATTATTCTTGTGGCTGTCTTTACCACACGCAACACACCTGTAAACCTGGCTGGTATGGCTGTTGAACGCTACATTGCCATTTGTGAGCCTCTACGTCATGCCCAGATATGTACTGTACGGCGCACCTATATTCTCATTGGCTTTATCTGGTTCATCTGTATAGTGCCTGATATCACTGACCTCTTTATAACTCTGGCTACGGAACCCATCAGCTTCTTCTATAGTTCTGTAATGTGTATGCGCCAGAATGTCTTCAAAGACCCAGTGCTTCTGTACAAGAGGCAAGCCTTTGATGCAATATACTTCTCTTTAGTATTCCTCACACTAGTCTATACATACCTGAAGGTTCTGTTTGCAGCCCGGGCAATCTCTACTGAGAAAACATCAGCCCAAAAGGCAAGAAACACTATTTTGCTTCATGGAGTTCAACTTCTCATGTGTATGCTCTCCTATATTTCTCCCAGTGTTGAGGTTGTCCTAAACATTATCTTCCCTGGACGTATCCTGGAAATCCGTTATGCCAACTATCTCattgtctacatcatgccacgTTTTCTAGGTCCAATCATATATGGAGTCCGAGATCAAAAGTTCTGCAAGTACCTGAAGAGGTATTTTATAATTGTTCAGTGCAAATCCAGCACAAGAGTAGACAGCCAAGAGGAAGATAATTAA

Function

NR:

description
PREDICTED: olfactory receptor 51D1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299610.1 True 942 mRNA 0.42 1 6673252 6674193

Neighbor

gene id symbol gene type direction distance location
LOC113526892 NA coding upstream 5547 6666938 ~ 6667705 (+)
LOC113526899 NA coding upstream 18341 6653982 ~ 6654911 (+)
LOC113526908 NA coding upstream 33222 6639083 ~ 6640030 (+)
or134-1 LOC108271602,LOC108271622,LOC108435678,LOC103033030 coding upstream 35703 6636608 ~ 6637549 (+)
matn4 matn4,LOC108412935,LOC107696469 coding upstream 51572 6599357 ~ 6621680 (+)
LOC113526885 LOC108271621,LOC108435693,LOC103036533 coding downstream 6818 6681011 ~ 6682780 (+)
LOC113526877 LOC108271619 coding downstream 14101 6688294 ~ 6689235 (+)
LOC113526867 NA coding downstream 19671 6693864 ~ 6694805 (+)
LOC113526859 NA coding downstream 40402 6714595 ~ 6715524 (+)
si:dkey-43k4.5 LOC108435666,LOC108271680,LOC103374879,LOC102299656,LOC101482251 coding downstream 43012 6717205 ~ 6727549 (+)
G22683 NA non-coding upstream 21859 6651105 ~ 6651393 (+)
G22673 NA non-coding upstream 49803 6623243 ~ 6623449 (+)
G22621 NA non-coding upstream 115251 6557791 ~ 6558001 (+)
G22598 NA non-coding upstream 171801 6501220 ~ 6501451 (+)
G22592 NA non-coding upstream 190104 6481972 ~ 6483148 (+)
G22765 NA non-coding downstream 125883 6800076 ~ 6800790 (+)
G22931 NA non-coding downstream 369382 7043575 ~ 7043782 (+)
G23115 NA non-coding downstream 652170 7326363 ~ 7370530 (+)
LOC117599372 NA non-coding downstream 667116 7341309 ~ 7343059 (+)
G23258 NA non-coding downstream 978838 7653031 ~ 7653288 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 446091 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 623347 6036714 ~ 6049905 (+)
tmem74b NA other upstream 697250 5968198 ~ 5976002 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other upstream 916564 5717530 ~ 5756688 (+)
atp5f1e NA other upstream 1170021 5501645 ~ 5503231 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 1231405 7905598 ~ 7930557 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other downstream 1733612 8407805 ~ 8439341 (+)
cysltr3 LOC108271499 other downstream 2322741 8996934 ~ 9004941 (+)
hmga1b NA other downstream 2776732 9450925 ~ 9454462 (+)
LOC113532547 LOC108271588 other downstream 2917748 9591941 ~ 9603506 (+)

Expression


Co-expression Network