farp2 (farp2)


Basic Information

Item Value
gene id farp2
gene name farp2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18858439 ~ 18917006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299801.1
CGATTCCTCCAATCAGAACGTTTCGGGATTCTTCCAATCAGATGACGCCTTTGTTTGCGGCTCGCGCCTGTAACTCCAGTCGCAAGTAATtcccgaaaaaaaaaagacttgaggaaaagaaaacgGTGCACTAATACGAGgcagtgtgtgtgtgtgagagagaagccCGGCTGCGCCGTGAGCAGCAATGGGTGAGATCGAGGGCACATACCGGGCGCTGCCTACTCCAGGCACACGCCTGGGCTCTCAGTTCAACCCCGGCATCAGCACGCTGGAAACCGGGCAGAGCCTGAACTCTTCTGTAGCAGGAGGCAAAGGCAAGTGCCTGCAGATCCGTGTTCAGGGCCTGGACGATGCTCAGGAGTTCTACGAGCTTGAGGCTAAAGCAGATGGACAGACCCTTCTTAATGACGTGTATCGCAGGATCAATCTCATCGAGAGCGATTACTTTGGTCTGGAGTTCCAGAATGTGCAGATGAACTGGGTTTGGCTGGAGCCCACCAAGCTCATAGCGAAACAAGTGCGACGACCAATGAACACACTCTTTCGGTTGTCAGTGAAGTTCTTCCCACCAGATCCTGGCCAGCTTCAGGAGGAATTCACCAGGTACCTATTCTCTCTGCAGATGAAGCGAGATCTGATGGAAGGCCTACTGAACTGCAGCGAAAACACAGCAGCTCTGCTGGCCTCTCACCTGGTCCAGTcTGAGATTGGAGACTATGATGATGTTGCAGACAGGGAGTATCTGAAGCTCACTAAGCTGCTGCCGCACCAGGAGCAGTTGCAGGAGAAGATCATGGAGATCCATCGCAGACATGTGGGTCAGACACCTGCCGAGTCTGATTTCCAAGTGCTGGAGATCGCCCGTAAGTTGGAGATGTACGGTGTGCGTTTCCATCCTGCAGCCGACCGTGAAGGCACCAAGATCAACCTGTCAGTGGCCCACATTGGCCTGCAGGTCTTCCAGGGCAACACCAAGATCAACACATTCAACTGGTCTAAGATTCGCAAACTGAGCTTCAAAAGGAAGAGATTTCTTATCAAGCTGCACCCCGAGGTCCATGGTCCTCATCAGGACACACTGGAGTTCCTGATGGCTAGTCGTGATCAGTGCAAGATCTTCTGGAAGAGCTGCGTGGAGCACCACGCCTTCTTCCGTCTGTTTGATAAACCAGAACCCAAAGccaaagccattttttttagcaGGGGATCTTCCTTCAGATACAGtGGGCGAACTCAGAAGCAGCTGGTGCAGTATGTTAGGGACAGTGGTGTGAAAAGAACCCCCTACCAAAGGAGGAACAGCAGTAAAATCCGTATGTCAACTCGCTCCTTAGCCACTGATTTTCCTAAACAGAGTCTGTCCTTCAACGACAGCCTTAAGATTTGCAGTTCTCCCCCATCTGCCACTGTTTCCTTCCACTCTCTGCACTCATCCATCTCTCCTGTACGACTGGATAACAATAGCAAACCTCAAATCCAGCagatccagcacatcccatcTCTCCAGCAGCCTGTGAGACCACCTACCCCTGTGAAGGAGGAGCCTGCAAAGATCCACCCTCCATCTAACTCAGCCTTCCCAGGTGCCCCTTACAACCCGCCCCAGCTGTCTCCCTTTGGGTCTAAGTGTCCGCTGAGTGTGTCCTCGTCCTTCCAGATGTCCACGCTCAGCTTGCCCAGCCAGGCACCTTCGAGTCCTGTTCTCAACGAGGGGGGCAGCGCCAgactggaggaggaggaggagctcaGGAGGAAGAGATATCCCACTGATAAAGCCTACTTTATTGCCAAAGAGATTCTGATGACTGAGAGGACGTACCTGAAGGACCTGGAGGTTATCACAGTGTGGTTCCGCAGTGCAGTGATTAAAGAGAATGCCATGCCTGAAGGCCTGATGACCCTCCTTTTCTCCAACATTGACCCCATCTATGAGTTTCATCGAGGCTTTCTCAAAGAAATCGACCAGAGGCTGGCTCTCTGGGGAGGGCGCTCTAACGCTCATGTGAAGGGAGATTACCAGAGGATTGGTGACGTTATGCTGAGGAACATGTGTGCCCTGAAGGAGTTCACCAGCTACCTACAGAAGCACGATGAGGTATTGACTGAGCTGGAGAAGGCAACGAAGCGTGTAAAGAAGCTGGAGACGGTGTATAAAGAGTTTGAGCTGCAGAAGGTGTGTTACCTGCCCCTCAACACCTTCCTGCTCAAACCCATCCAGAGGCTCATGCACTACAAGCTGATCCTGGAACGCCTGTGTAAACACTACTCCCCTGAGCACAGGGACCACCACGACTGCAAAGaggCCCTAAAGGAAGTGGCAGAGATAACAGCTCAGCTGCAAAGTAGCCTCATCCGACTGGAGAACTTCCAGAAACTGACAGAACTGCAGCGGGACCTGATTGGCATCGAGAACCTCACTGCTCCTGGCAGGGAGTTCATCAGGGAAGGCTGCCTTTATAAGCTTACAAAGAAAGGCCTGCAGCAAAGGATGTTCTTCCTGTTTTCAGACATGCTCCTTTACACAAGCAAAGGTGTCACAGCCACCAACCAATTTAAAGTTCATGGCCAGCTTCCCCTCCATGGCATGCTTGTGGAGGAGAGTGAGAACGAGTGGTCAGTCCCTCACTGTTTCACCATCTACTCAGCCCAGAGGACCATCGTGGTGGCTGCCAGCTCTAAAGTAGAGATGACTAAGTGGATTGAGGACCTGAACATGGCGATTGATATTGCGAAGAAGACACAGGAGAAATCGGATATATTTCTCGACCCAAGTCTGTGTGATCGCTCCAACAGGTCGTCTGATGAGGTGTCATTGGAGCAGGAGTCTGAGGACGATGTGAACTCGTCCCGATGCTCTCTGGACAAACAGAGCCACCATCGTGCCAACACCACCATGCACGTGTGCTGGCACCGCAACACCAGTGTCTCCATGTCTGACCACAGCCTAGCCGTGGAGAACCAGCTGTCTGGCTACCTGCTGAGGAAGTTTAAAAACAGTAACGGCTGGCAGAAATTGTGGGTGGTCTTCACCAACTTCTGTTTGTTCTTCTATAAGACACACCAGGATGACTTCCCTCTGGCTAGCCTGCCTCTTCTGGGTTACACGGTCAGCACACCTGGGGAATCAGATAGCATTCACAAAGAATATGTCTTCAAGCTGCAGTTCAAGTCCCATGTTTATTTCTTCAGGGCCGAAAGCGAGTATACCTTTGAAAGGTGGATGGAGGTGATAAAGAGTGCAGCGAGCGCCGCCGGCAGGGTGAGTCTGCTCATCCCTAAAGGCCCAGAGGAGATGAATGGGAACTGAAGATCGAAACTGAGGCTGGTTGTCCTCCTGGAGCTCGGGGCTGGGCCCTGAAGACTGCCATGAGTCTAcgctattattttatttaatcctCTCTGTTTCGTGGCTCCTAATGCCATTATCTTCATCATTTCTGCTGAATGGAAATGGAAGAAGTCGGGGGCCGTCTAAGAGCTCGactctttctatttttttttaatctttgacaTGTGGGCTATGACCCCTTCATTTGAAAGTCATGCCAAGTTCTGCAGTTTTCCAGAAGAgtaatataactgtaaatggcTATTATGTTCTATTTTGGTTCATGTGGTCTTGCTACAATTTCAGCGGTCACATTTCTAAAATTGCCAGTTCTTCATCTCAAAACTGGGAGCTCGTCCAGAGCTGCCAAATGGTATTGTCTCAAACCCATTAGGACTTCCTGAATGGGTTTCAATGTCATTAAAGCTCATTTTGTGTAATCTCAATCTCAACTCCTCATATTTATGGGAGCACAGTAACGGAACACTGCCGAAAGGAGTAATGGACTAAATCATGTCTGGATGGTAGAGTAAGTGAAAAGAGTGAAGAAAGAAGGACGCAGAACCACAGTGGCGTGGGCCAGAGGATACGGCGGCACTCAGGAGATGATGTGGTTTGGGAAAACAGCCATCGTCCTCTGTAAACTGTTGTAAAAGTGATGGTATTGAATTAAGGGCACTGAAATTGAGATGAGCGACAGAATAATTGGTGATCTGGTGTGGACACACAAGTGAGTAAAGTCTGTAGTGTGTTTCTGTTCCTGTTCAGTTCCACATTCATCACAGTATGACTTTGGTGatgttatatttttgttatactttattaaaatgCCTGGTTAATTAACAGTTATGTATGGAACTGCTTTGACTCATGTAAATGTAAGAAATATTGAGATATATTGAAAAGGCTCATTCAGAGAGTATTTAACAGTTTTGTTACTGACAGTGCATTTATGCACGCTTCTCATctctaaattttatttttatttttatttctttttttttttctggagaaCCACAAGGGGGAGTCAGCATCTAGAGTATAAGTACAGACTTAGTCCTGGTGCTCACTGATGCAAAAGCTAACTACTCTTTCTGCCTTGTGATTAGGGTAGTTAACTTCGGCTTCTATTAAACATCTGGCTCTGCTACGTTCTCCACTTCTCCTGCATACTAATCGTGAATAAGGGAACATGGACCTTGTGCAAAACTGGTCTCATGAAAGTTACAGTTCATGTGCTTAAACCAAAAAAAGGTCAGTGTGATGAggttttttcagtttctttctcttttatagCTTGTAGAGAAATGTTGAAGCAAACATTATACTGTTGTCTGTATTATTAATCCTTTGTTCCTCTATAAGGGCCAGTTCTTTTATGTAAATATCTGGGTTGTCATATGGTGAAGCAGAATTtcttttaaaggaatatttctgTGAATAGTTTGATTTACACAATGTTTTCCATACCCCGAATGCAACTGATTAACCAAGACAGGTTTGATGATTGAACATTGCTTCTGCATCTGCAAGCTACAAGGATAAGTCCTCACGCACTCACCTCAATGGACAAAAGGTTtcataaaatagaaaaataagtCTGTGACGAAATTAATTTCATCCAAATCACTTCTGATGTACaattctgccttcagtcttcgGGCTCCTTCCTGAGTCTGATGCTTGTGTGGAGTGATGTTAAActgctgaggaagaaagtgattctgGCTTCGGTGTGGCTGCTACTACTGGTTTTTGCTATGTGAATAacttatgttctttttttttttttatacattacaaCAATGTGCCATATagtcagaaaccacataaaatagtagctataagcttcctccagctccagtgcaaaaataaagcaaacatcAGGCATCAAACCCATCTTGGCTGATCAACTGTATTGGTATAAGGAGAGCATTGTGTATGTTTAATTTTCGCCTGAAGTGTCCCTTTAAAATTTTGAAACATGTTATGTTAACTCGTAAGGGCTGAGATTAACTGTAAATTAACTCAATCTTATTTGGGAGATTTGACCTATGATATTGAAAGGATCATAGTCTTCACTAGGCTGTTACATTGGGACATGAATGCTGTACTGGGTCCGACCAAAGACCTAAAAAGTCACATATAAGACTGAAAACCTTAGGCTGAGGTTTTTTCAGCCACACATTAATCGGTACTAGTGACTTTTTggatacacttttttttttttttttttttttttttttaatataagtaaGCAGATATTATGCACATCTCATGAGTCCTGCATTGCTAGCGGTTTTACCAAACCTTTGTTTGGTTCTCattacttttatacactttttacaAAGACTGGAATTTGTAATGTTTCACTCTTGTGTATCCCGCCATAACAGACATTTTCATATGACTGTCACGTTTAGAGTTTAGAATGAGCTTTACCAAAGCTCCAGGTTGCTTCTGTCATTCAGAGGAAATCTGAACAATTCTGTTTCTGTTGCACGTTGCTCCTATTTATTGTGTAGCATGTTGCTATAGTCAGTTCCATgtcattacatatttaaaagataactaataaaaacaaactggTATTAATTGGG

Function

symbol description
farp2 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoskeleton. Orthologous to human FARP2 (FERM, ARH/RhoGEF and pleckstrin domain protein 2).

NR:

description
FERM, RhoGEF and pleckstrin domain-containing protein 2

GO: NA

KEGG:

id description
K06082 FARP2, FRG; FERM, RhoGEF and pleckstrin domain protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299801.1 True 5931 mRNA 0.46 27 18858439 18917006

Neighbor

gene id symbol gene type direction distance location
LOC113527312 NA coding upstream 1277 18841437 ~ 18857162 (+)
dzip1l LOC108271535 coding upstream 243614 18600959 ~ 18614825 (+)
LOC113536767 LOC108272161 coding upstream 444484 18298375 ~ 18413955 (+)
LOC113532395 kyat3,ccbl2,LOC100332215 coding upstream 711522 18139055 ~ 18146917 (+)
barhl2 barhl2,LOC107749991 coding upstream 935620 17918400 ~ 17922819 (+)
atg4b atg4b coding downstream 34683 18951689 ~ 18957780 (+)
kif1aa kif1a,kif1aa,LOC108427666,LOC107593169 coding downstream 70997 18988003 ~ 19049750 (+)
scly scly coding downstream 135116 19052122 ~ 19060672 (+)
klhl30 klhl30,LOC107696751,LOC107753621,LOC107752665,LOC107694118 coding downstream 172878 19089884 ~ 19096027 (+)
crocc2 LOC108272137 coding downstream 180731 19097737 ~ 19152457 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding upstream 167432 18688653 ~ 18691007 (+)
LOC113530672 NA non-coding upstream 391119 18464884 ~ 18467320 (+)
LOC113536874 NA non-coding upstream 498404 18358202 ~ 18360035 (+)
G29281 znf326 non-coding upstream 772795 18083719 ~ 18085644 (+)
G29106 NA non-coding upstream 1093666 17694754 ~ 17764773 (+)
G29640 NA non-coding downstream 133220 19050226 ~ 19050438 (+)
G29641 NA non-coding downstream 133818 19050824 ~ 19051043 (+)
G29656 NA non-coding downstream 275543 19192549 ~ 19195409 (+)
G29674 NA non-coding downstream 283309 19200315 ~ 19202099 (+)
G29792 NA non-coding downstream 342042 19259048 ~ 19259266 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 22718 18774770 ~ 18835721 (+)
trnai-aau NA other upstream 40964 18817402 ~ 18817475 (+)
tomm6 tomm6 other upstream 2457328 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 2676130 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 2755191 16083289 ~ 16103248 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 15677 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 144091 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 617339 19534345 ~ 19537197 (+)
LOC113543059 c11h1orf146 other downstream 1083040 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 1619967 20536973 ~ 20658080 (+)

Expression


Co-expression Network