LOC113526885 (LOC108271621,LOC108435693,LOC103036533)


Basic Information

Item Value
gene id LOC113526885
gene name LOC108271621,LOC108435693,LOC103036533
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6681011 ~ 6682780 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299923.1
TGAACTCTTCTGCTGGCTCTGCATATGAAAACTTCAACCTCAGCCTGCCTCAGAATGTTACTCCAAAGGACAGCTTTAGCAGCGCACTTACAAAAAACATAGTGGCCATGCTAGTGTGGCTGGCCCTTAGCATCCTCAATGGTACCATGACATCCACTTTCTTTAAACACAACTTTTTCTACGAGGACCCGCGCTacataatgtttatttacatgGTCATTAATGATGCAGTCCAGCTGACGCTTGTAACAGGTCTGTATGTGGTGAGTTATGCTTTCTCCAAGATCCTGGTGTCTGCCTGTTGCCCACTCATCATGACAGCTGTTCTGACGACACGCTCTACTCCCCTCATCCTTGGCGGGATGGCCATCGAGCGCTACATTTCCATTTGCTTTCCCCTCCATTACGGCCACATGTGCACAGTGCAGCGCACCATCTGGATCATAGGGGTTATCCTTGTTCTAAGTATCATACCCCCCCTCACAGACCTCTTTATAACTCTTGCCAAGGAGCCTGCATCCTTTTTTGAAAGCTTTATCTTCTGTGACCACTCACTTCTCTTCCGTGACCGCTCCATCTACTACAAGAATTGTGCTTTTGACAGtgtctatttttcttttgtctttttggcTTTACTCTATACATACTGCAAGATCATGTTGACAGCACGAGCAGCCTCCACTGACCTGGTGTCTGTGAAAAAGGCACGGAACACGGTGCTGCTCCATTGTGTGCAGCTGCTGCTCTGCATGCTGGCTTTTGTGGTGCCATCCATGCAGGCTCCTCTAATCCAGTTGTTTCCCCAGTATGGACTGGAAATACGCTACATCAACTTTCTGCTGGTGTACATCATCCCACGCTTCTTGAGCCCTATGATCTATGGAGTGAGAGATGAGAAATTCAGAAAGTATTGGATTAGGTACCTTCTGTCTAGGGTCAATAGGGTGAAACCTACTGAACACTTGCCTCAAAAACCAAGGTGAATTTCAAGGTGTGTAGGTCACTGATACTGTATATCGAATGTACTGAATATCATCATATACAAATGAGGTTAGTTCACAAATATGAAGTGGTTATGGATTACTGGGGACTAAGGATTAT

Function

NR:

description
PREDICTED: olfactory receptor 51L1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299923.1 True 1101 mRNA 0.46 2 6681011 6682780

Neighbor

gene id symbol gene type direction distance location
LOC117596064 LOC108271622,LOC108271602,LOC108435678 coding upstream 6818 6673252 ~ 6674193 (+)
LOC113526892 NA coding upstream 13306 6666938 ~ 6667705 (+)
LOC113526899 NA coding upstream 26100 6653982 ~ 6654911 (+)
LOC113526908 NA coding upstream 40981 6639083 ~ 6640030 (+)
or134-1 LOC108271602,LOC108271622,LOC108435678,LOC103033030 coding upstream 43462 6636608 ~ 6637549 (+)
LOC113526877 LOC108271619 coding downstream 5514 6688294 ~ 6689235 (+)
LOC113526867 NA coding downstream 11084 6693864 ~ 6694805 (+)
LOC113526859 NA coding downstream 31815 6714595 ~ 6715524 (+)
si:dkey-43k4.5 LOC108435666,LOC108271680,LOC103374879,LOC102299656,LOC101482251 coding downstream 34425 6717205 ~ 6727549 (+)
cntn3b cntn3b,LOC108271503,LOC107555980,LOC107599411,LOC107666965 coding downstream 774670 7457450 ~ 7527601 (+)
G22683 NA non-coding upstream 29618 6651105 ~ 6651393 (+)
G22673 NA non-coding upstream 57562 6623243 ~ 6623449 (+)
G22621 NA non-coding upstream 123010 6557791 ~ 6558001 (+)
G22598 NA non-coding upstream 179560 6501220 ~ 6501451 (+)
G22592 NA non-coding upstream 197863 6481972 ~ 6483148 (+)
G22765 NA non-coding downstream 117296 6800076 ~ 6800790 (+)
G22931 NA non-coding downstream 360795 7043575 ~ 7043782 (+)
G23115 NA non-coding downstream 643583 7326363 ~ 7370530 (+)
LOC117599372 NA non-coding downstream 658529 7341309 ~ 7343059 (+)
G23258 NA non-coding downstream 970251 7653031 ~ 7653288 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 453850 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 631106 6036714 ~ 6049905 (+)
tmem74b NA other upstream 705009 5968198 ~ 5976002 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other upstream 924323 5717530 ~ 5756688 (+)
atp5f1e NA other upstream 1177780 5501645 ~ 5503231 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 1222818 7905598 ~ 7930557 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other downstream 1725025 8407805 ~ 8439341 (+)
cysltr3 LOC108271499 other downstream 2314154 8996934 ~ 9004941 (+)
hmga1b NA other downstream 2768145 9450925 ~ 9454462 (+)
LOC113532547 LOC108271588 other downstream 2909161 9591941 ~ 9603506 (+)

Expression


Co-expression Network