LOC113545950


Basic Information

Item Value
gene id LOC113545950
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3182307 ~ 3193461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300623.1
GAGTGGGACAGAGACAGTAACAGTGTGTAAAAGAGCAGGAGATTTAATATCTTTCTGAAGTGGAGTTGGTGTGAATATCTATGAGTGTGAACTCAGGATGAagatcctcctcatcttcaCCCTCTGCCTGATCGCAGatGGAGGAGCCTCCAAGGAAGTAACAGGATATGCAGGAGGAGGAGTCCTTATCAAGTGCGAGTATAGTGCAGAGTACACAGAAaacctaaaatatttctgtaaggGTTCAGGACTAGGCTGTAATTACCAAATAAACACAGGAGCTAAAAACATGTGGATAAATTCAGGAAGATTCTCACTGTTTGATGACACCAAATCAGCAGAGTTCTGGGTGATGATCAGAGAGCTCACTGTACAGGACACTGGGACATACCAGTGTGGAGTTTATAGAGGTTTGGTGTTAGACATTTTCACACCAGTGGAACTGAAGGTAAAGAAAGGGGCCTTGGTCTCTAGAGAAGTGACTGCATATGCAGGGACAAGAAGCAATATTAAGTGCCGATATGAGGATAAATACAAAGACACACCCAAATCTTTCTGTAAGATTGAGACAGATCAGTGGGGTTTTAAGCAAATAAGTACAGAACCAAAAGGTTTATGGGCACATGATGGCAGATTCTCAATTCACGACAACAGAAGTGCAGGATTCTTCAGCGTGTTTATCAGAGAGCTGAATAATGAGGACTCTGGAACATATGCGTGTGCTGTTGTTTTGTCTGATGAAACAGAGATCTACACTGTAGTAAAGCTGAATGTAACAGAAGAATATGATATGATGAATGTATCATACATAAACTCATCTGATGTATTGGGATATACAGCTCTGTCCTATGAGAAGTCCATCAGTGAGACTGTTCATGTAGGAGGAGATGTGACTATCAGCTGCAAATACCCAGAATCCCAAAGGAATGACAATAAGTTTCTCTGCAAAAGGAATGCAATTGCTGCTTGTTTTTATAATTCAACTGTTAAAGAAAGTAGAAAGTATGTAAATAAGGGGAAATTCTCCCAGTATGatgacagagaaaaacaaatctTCACCGTGCGCCTCAATAATGTGACTGAGCAGGACTCTGGTGAATACTGGTGTGGAGCTGAAGTAAACTGGAAATCTGATAATGGATACAAGGTTTATTTCATGCAGATCAACCTGAGTGTTACTGCATTTCCAGTTTTCACTGTGATCACTGTGTCTGTGATTCTGCTGGTGCTTCTGGCTGGAATTTCAATCCTCACTGTGACTCTCCGAAAGAGATTCAAGCTACAAGGCCAagaaacaattacacacatttccagAGGGACTAACAGAGAAGATGAAAATGAGCCACAGTCTGTCTATGAGAGTGTGATCGCCAACACCTACCAATTAGATCCAGTCTATGAAAATCTCAGTTATTAAACCAACCAACCTGATTCAATCTAACGGAGTCTAAAATCCCCCTCTAGTCATTGAACTTAAGGCTAATAGCTTCTCTTTTACACTGTACTGGTCTTGATAGAAAAGCCAATAAGATTCATTGTAAGGttatattttgaacatttacttATGGAAATCACTCAAATTTCCTTCCTCTGCAATGAAGAAAAATTGCCAGTCTGTCAAAATTTGTTCAGCAGTCTGTCTTTTGCTCAAGAGCCTAGTACTTTTTTAGTCAGTAAATGTGGCCAAAAGCTGCTACATGGATATCAAAGCCATCCGATTCTAAAAAGATATTCCAATTTTAAACAAATCCTAGAATAACTTGGAAAGACCAGAtggtgtaaacttt
>XM_034300626.1
GAGTGGGACAGAGACAGTAACAGTGTGTAAAAGAGCAGGAGATTTAATATCTTTCTGAAGTGGAGTTGGTGTGAATATCTATGAGTGTGAACTCAGGATGAagatcctcctcatcttcaCCCTCTGCCTGATCGCAGatGGAGGAGCCTCCAAGGAAGTAACAGGATATGCAGGAGGAGGAGTCCTTATCAAGTGCGAGTATAGTGCAGAGTACACAGAAaacctaaaatatttctgtaaggGTTCAGGACTAGGCTGTAATTACCAAATAAACACAGGAGCTAAAAACATGTGGATAAATTCAGGAAGATTCTCACTGTTTGATGACACCAAATCAGCAGAGTTCTGGGTGATGATCAGAGAGCTCACTGTACAGGACACTGGGACATACCAGTGTGGAGTTTATAGAGGTTTGGTGTTAGACATTTTCACACCAGTGGAACTGAAGGTAAAGAAAGGGGCCTTGGTCTCTAGAGAAGTGACTGCATATGCAGGGACAAGAAGCAATATTAAGTGCCGATATGAGGATAAATACAAAGACACACCCAAATCTTTCTGTAAGATTGAGACAGATCAGTGGGGTTTTAAGCAAATAAGTACAGAACCAAAAGGTTTATGGGCACATGATGGCAGATTCTCAATTCACGACAACAGAAGTGCAGGATTCTTCAGCGTGTTTATCAGAGAGCTGAATAATGAGGACTCTGGAACATATGCGTGTGCTGTTGTTTTGTCTGATGAAACAGAGATCTACACTGTAGTAAAGCTGAATGTAACAGAAGCTCTGTCCTATGAGAAGTCCATCAGTGAGACTGTTCATGTAGGAGGAGATGTGACTATCAGCTGCAAATACCCAGAATCCCAAAGGAATGACAATAAGTTTCTCTGCAAAAGGAATGCAATTGCTGCTTGTTTTTATAATTCAACTGTTAAAGAAAGTAGAAAGTATGTAAATAAGGGGAAATTCTCCCAGTATGatgacagagaaaaacaaatctTCACCGTGCGCCTCAATAATGTGACTGAGCAGGACTCTGGTGAATACTGGTGTGGAGCTGAAGTAAACTGGAAATCTGATAATGGATACAAGGTTTATTTCATGCAGATCAACCTGAGTGTTACTGCATTTCCAGTTTTCACTGTGATCACTGTGTCTGTGATTCTGCTGGTGCTTCTGGCTGGAATTTCAATCCTCACTGTGACTCTCCGAAAGAGATTCAAGCTACAAGGCCAagaaacaattacacacatttccagAGGGACTAACAGAGAAGATGAAAATGAGCCACAGTCTGTCTATGAGAGTGTGATCGCCAACACCTACCAATTAGATCCAGTCTATGAAAATCTCAGTTATTAAACCAACCAACCTGATTCAATCTAACGGAGTCTAAAATCCCCCTCTAGTCATTGAACTTAAGGCTAATAGCTTCTCTTTTACACTGTACTGGTCTTGATAGAAAAGCCAATAAGATTCATTGTAAGGttatattttgaacatttacttATGGAAATCACTCAAATTTCCTTCCTCTGCAATGAAGAAAAATTGCCAGTCTGTCAAAATTTGTTCAGCAGTCTGTCTTTTGCTCAAGAGCCTAGTACTTTTTTAGTCAGTAAATGTGGCCAAAAGCTGCTACATGGATATCAAAGCCATCCGATTCTAAAAAGATATTCCAATTTTAAACAAATCCTAGAATAACTTGGAAAGACCAGAtggtgtaaacttt
>XR_004577413.1
GAGTGGGACAGAGACAGTAACAGTGTGTAAAAGAGCAGGAGATTTAATATCTTTCTGAAGTGGAGTTGGTGTGAATATCTATGAGTGTGAACTCAGGATGAagatcctcctcatcttcaCCCTCTGCCTGATCGCAGatGGAGGAGCCTCCAAGGAAGTAACAGGATATGCAGGAGGAGGAGTCCTTATCAAGTGCGAGTATAGTGCAGAGTACACAGAAaacctaaaatatttctgtaaggGTTCAGGACTAGGCTGTAATTACCAAATAAACACAGGAGCTAAAAACATGTGGATAAATTCAGGAAGATTCTCACTGTTTGATGACACCAAATCAGCAGAGTTCTGGGTGATGATCAGAGAGCTCACTGTACAGGACACTGGGACATACCAGTGTGGAGTTTATAGAGGTTTGGTGTTAGACATTTTCACACCAGTGGAACTGAAGGTAAAGAAAGGGGCCTTGGTCTCTAGAGAAGTGACTGCATATGCAGGGACAAGAAGCAATATTAAGTGCCGATATGAGGATAAATACAAAGACACACCCAAATCTTTCTGTAAGATTGAGACAGATCAGTGGGGTTTTAAGCAAATAAGTACAGAACCAAAAGGTTTATGGGCACATGATGGCAGATTCTCAATTCACGACAACAGAAGTGCAGGATTCTTCAGCGTGTTTATCAGAGAGCTGAATAATGAGGACTCTGGAACATATGCGTGTGCTGTTGTTTTGTCTGATGAAACAGAGATCTACACTGTAGTAAAGCTGAATGTAACAGAAGAATATGATATGATGAATGTATCATACATAAACTCATCTGATGTATTGGGATATACAGCTCTGTCCTATGAGAAGTCCATCAGTGAGACTGTTCATGTAGGAGGAGATGTGACTATCAGCTGCAAATACCCAGAATCCCAAAGGAATGACAATAAGTTTCTCTGCAAAAGGAATGCAATTGCTGCTTGTTTTTATAATTCAACTGTTAAAGAAAGTAGAAAGTATGTAAATAAGGGGAAATTCTCCCAGTATGatgacagagaaaaacaaatctTCACCGTGCGCCTCAATAATGTGACTGAGCAGGACTCTGGTGAATACTGGTGTGGAGCTGAAGTAAACTGGAAATCTGATAATGGATACAAGGTTTATTTCATGCAGATCAACCTGAGTGTTACTGGTGAGTTTGTGATGCTGACATTCTGTAATTTCAGACAAACATAACAGACATACATAAACCTTTTTGATAGCTGGATAACAGAATTGAGGAAAATAATTGgaaataattttgtttcttaCTGAAATAAATTAGCTTATTTCAAGCCtttatttgccaaaaaaaagtaattccaGCTTCCAACAATttcataattgtttttttttttttgctaaaactGAAAAGTCTGCCTTCTGCTTTACACAAGCATTTTgacttttcagaaatattactAGCACCACAGAAATTTGTCACCTAATCTTAATATGGGGATTTCTTCAGCTAACAGCAGTCAGTGTCTCTGAAGATCCAAATCCAAATAAATCCACAAAtacaacacatacagtatacagtgccTGTATTGTTTTTAGTCATACTCTAGAGCCACACACTGCATGTATgtgcttttttcatttataatctaataaatgaatgattgtgtttttgatCCATGAGTCCCAACTTCTCTCAGCCTACATCAACTTCTCCTCCAACAGCATTTCCAGTTTTCACTGTGATCACTGTGTCTGTGATTCTGCTGGTGCTTCTGGCTGGAATTTCAATCCTCACTGTGACTCTCCGAAAGAGATTCAAGCTACAAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300623.1 False 1787 mRNA 0.40 7 3182307 3193461
XM_034300626.1 False 1730 mRNA 0.40 7 3182307 3193461
XR_004577413.1 True 1821 misc_RNA 0.39 5 3182307 3187000

Neighbor

gene id symbol gene type direction distance location
LOC113545949 LOC108271656 coding upstream 918 3168038 ~ 3181389 (+)
ppig ppig coding upstream 16558 3152768 ~ 3165749 (+)
klhl41b LOC108271921,LOC103025159,LOC108438036,LOC107672655,LOC107557135,LOC107686793,LOC107582363,LOC107746633 coding upstream 30601 3144893 ~ 3151706 (+)
col28a2b LOC108271920,LOC108438056,LOC103354592,LOC103389749,LOC101477258,LOC102210360 coding upstream 40718 3100344 ~ 3141589 (+)
si:dkey-197j19.6 LOC108271935 coding upstream 88677 3085052 ~ 3093630 (+)
LOC113545972 LOC108272174,LOC108271666,LOC108262055,LOC108271668 coding downstream 25879 3219340 ~ 3224174 (+)
phospho2 phospho2 coding downstream 36261 3229722 ~ 3232728 (+)
ssb ssb coding downstream 40078 3233539 ~ 3241973 (+)
erich2 LOC108271660 coding downstream 90427 3283888 ~ 3294512 (+)
gad1b gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324 coding downstream 103853 3297314 ~ 3337934 (+)
G20848 NA non-coding upstream 29793 3152314 ~ 3152514 (+)
G20807 NA non-coding upstream 230429 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 233461 2948610 ~ 2948846 (+)
G20401 NA non-coding upstream 814089 2366609 ~ 2368218 (+)
G20372 chd1l non-coding upstream 851423 2329407 ~ 2330884 (+)
G20856 NA non-coding downstream 17000 3210461 ~ 3210931 (+)
LOC113545973 NA non-coding downstream 22153 3215614 ~ 3218711 (+)
G20868 NA non-coding downstream 138301 3331762 ~ 3353685 (+)
LOC117599318 NA non-coding downstream 186430 3379891 ~ 3382596 (+)
G21136 NA non-coding downstream 455870 3649331 ~ 3651978 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 118280 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 191826 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 193432 2988803 ~ 2988875 (+)
trnaf-gaa_10 NA other upstream 195874 2986218 ~ 2986433 (+)
col7a1 col7a1 other upstream 235451 2832153 ~ 2946856 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other downstream 146985 3340446 ~ 3367287 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 356764 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 386287 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 535191 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 1081612 4275073 ~ 4327860 (+)

Expression


Co-expression Network