agxta (agxt,agxta,LOC108427662,LOC107552266,LOC107696749)


Basic Information

Item Value
gene id agxta
gene name agxt,agxta,LOC108427662,LOC107552266,LOC107696749
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18964291 ~ 18969451 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310739.1
ACCTTTGGTCTTCTGTACAGATTACACACTTCTCCACTTCATTGCTTTTTTCCACTGTCACGTTAGAGGAGCTGCTCTTTGTCTCTTCAGTatgtcatctctctctgtcccaccACCGCAATGTCTCTTACAACCTTTTGTGGTCCCACACCGGCTTCTACTGGGACCGGGACCCTCCAACGTGCCTGCTCGGATTGTGACAGCTGCGTGCCAACCTATGTTAGGACACCTGCACCCTGAGACTATAGAGATTATGGATCAGATAAAGAGTGGGATCCAGTATGCATTTCAGACTCAGAATTGCATGACTCTGGCAGTGAGTGGGCCGGGTCATGCTGCTATGGAGTGTGCTATCTTTAACTCAGTAGAGCCTGGAGATAGTGTGCTCATTGCAGTCAACGGCATCTGGGGGGAGAGAGCTGCTGAAATCGCACAGAGAATAGGTGCCAAAGTGAACACTATTGTAACCTCAGCTGGCAGGTACTtcacaaacagtgaaatagagCAGGCATTAGCCAAATATAAGCCAGTTCTGTTCTTCCTCACACACGGAGAGTCTTCTACAGGAGTGGTGCACCCCATAGATGGCATTGGCGAGCTCTGTCACAAGTATGGTAGTTTGTTCTTGGTTGACTCTGTTGCAGCACTCGGAGGTAGTCCAATCTACATGGACAAGCAagCTATCGACATTTTGTACACTGGCTCTCAGAAGGTCCTAAACGCACCTCCAGGAACTGCACCAATCTCCTTCAGTGAGAGAGCATGCCACAAAATCTTCAGCAGGAAGACAAAgcctgtgtctttttttctggaCCTGAACTGGCTGGCCAGTTACTGGGGCTGTGATGGAAAACCTGCTCGCATTTATCATCACACTGGACCTGTAACTGCATTATACAGTCTGAGAGAAGGTCTTGCCATCCTTGCAGAGACGGGGCTTGAAAAATCATGGAAACGACACAAAGATGTGGCAGAGTACTTCCATACAGGCCTAGAAAAGATGGGTCTCAAGCTCTTTGTGGAGGAGAAGAAAGCGAGATTGCCcacagttactacagtagtagCACCACCAGGTTATGACTGGAAAGAGATCACACGCTTCATTATGAAGAATCACAACATAGAAATCTCTGGAGGTCTTGGGCCATCAGTTGGCATGGTAGGGGTCCTGCGTGTGGGTCTAATGGGTTGTAACAGCAACAAGGACCATGTGGACATGATTTTAGAGGCTCTTTCTGATGCACTGAAACACTGCCACAAGAGTAAAGTGTAACAACACAGCTTGTGTGGCAAACACAACTTCTGCTGTAACATTAAtgcataaaatgtataaatgtctGAAAAGTACTCCTACTTTGAAATCACAACtaaagaaacaggaagtgctcTTATGCTGACATTTGGAACATTATTAACACAGTATGGATTCACAATTTGGAGTTGTAGCAGTAAGCTCTGTTTTATGAATCTCTAATATTATAGTTATAAATCTCTTATAATATAGTTTGTCTAATAATAGTTTTACttacaatatatttatagatttttttttaaattgttattatcAATGTAAGAATCTGTACTGAATATctgttacaaataaatatttgctatatataacaaataa
>XM_034310741.1
TTGGTCTTCTGTACAGATTACACACTTCTCCACTTCATTGCTTTTTTCCACTGTCACGTTAGAGGAGCTGCTCTTTGTCTCTTCAGTatgtcatctctctctgtcccaccACCGCAATGTCTCTTACAACCTTTTGTGGTCCCACACCGGCTTCTACTGGGACCGGGACCCTCCAACGTGCCTGCTCGGATTGTGACAGCTGCGTGCCAACCTATGTTAGGACACCTGCACCCTGAGACTATAGAGATTATGGATCAGATAAAGAGTGGGATCCAGTATGCATTTCAGACTCAGAATTGCATGACTCTGGCAGTGAGTGGGCCGGGTCATGCTGCTATGGAGTGTGCTATCTTTAACTCAGTAGAGCCTGGAGATAGTGTGCTCATTGCAGTCAACGGCATCTGGGGGGAGAGAGCTGCTGAAATCGCACAGAGAATAGGTGCCAAAGTGAACACTATTGTAACCTCAGCTGGCAGGTACTtcacaaacagtgaaatagagCAGGCATTAGCCAAATATAAGCCAGTTCTGTTCTTCCTCACACACGGAGAGTCTTCTACAGGAGTGGTGCACCCCATAGATGGCATTGGCGAGCTCTGTCACAAGTATGGTAGTTTGTTCTTGGTTGACTCTGTTGCAGCACTCGGAGGTAGTCCAATCTACATGGACAAGCAagCTATCGACATTTTGTACACTGGCTCTCAGAAGGTCCTAAACGCACCTCCAGGAACTGCACCAATCTCCTTCAGTGAGAGAGCATGCCACAAAATCTTCAGCAGGAAGACAAAgcctgtgtctttttttctggaCCTGAACTGGCTGGCCAGTTACTGGGGCTGTGATGGAAAACCTGCTCGCATTTATCATCACACTGGACCTGTAACTGCATTATACAGTCTGAGAGAAGGTCTTGCCATCCTTGCAGAGACGGGGCTTGAAAAATCATGGAAACGACACAAAGATGTGGCAGAGTACTTCCATACAGGCCTAGAAAAGATGGGTCTCAAGCTCTTTGTGGAGGAGAAGAAAGCGAGATTGCCcacagttactacagtagtagCACCACCAGGTTATGACTGGAAAGAGATCACACGCTTCATTATGAAGAATCACAACATAGAAATCTCTGGAGGTCTTGGGCCATCAGTTGGCATGGTCCTGCGTGTGGGTCTAATGGGTTGTAACAGCAACAAGGACCATGTGGACATGATTTTAGAGGCTCTTTCTGATGCACTGAAACACTGCCACAAGAGTAAAGTGTAACAACACAGCTTGTGTGGCAAACACAACTTCTGCTGTAACATTAAtgcataaaatgtataaatgtctGAAAAGTACTCCTACTTTGAAATCACAACtaaagaaacaggaagtgctcTTATGCTGACATTTGGAACATTATTAACACAGTATGGATTCACAATTTGGAGTTGTAGCAGTAAGCTCTGTTTTATGAATCTCTAATATTATAGTTATAAATCTCTTATAATATAGTTTGTCTAATAATAGTTTTACttacaatatatttatagatttttttttaaattgttattatcAATGTAAGAATCTGTACTGAATATctgttacaaataaatatttgctatatataacaaat

Function

symbol description
agxta Predicted to enable alanine-glyoxylate transaminase activity and serine-pyruvate transaminase activity. Predicted to be involved in glycine biosynthetic process, by transamination of glyoxylate. Predicted to be active in peroxisome. Is expressed in liver and pronephric duct. Human ortholog(s) of this gene implicated in primary hyperoxaluria type 1. Orthologous to human AGXT (alanine--glyoxylate and serine--pyruvate aminotransferase).
agxt Enables several functions, including alanine-glyoxylate transaminase activity; protein homodimerization activity; and pyridoxal phosphate binding activity. Involved in carboxylic acid metabolic process. Located in peroxisomal matrix. Implicated in primary hyperoxaluria type 1.

NR:

description
serine--pyruvate aminotransferase, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310739.1 True 1627 mRNA 0.43 11 18964291 18969451
XM_034310741.1 False 1615 mRNA 0.43 11 18964293 18969447

Neighbor

gene id symbol gene type direction distance location
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding downstream 2620 18957773 ~ 18961671 (-)
stk25a stk25,stk25a,LOC108427658,LOC107733254,LOC107593165,LOC107694119 coding downstream 37090 18916625 ~ 18927201 (-)
hdlbpa hdlbp coding downstream 128502 18820057 ~ 18835789 (-)
sox14 sox14,LOC103365676,LOC100695210 coding downstream 273209 18688598 ~ 18691082 (-)
LOC113534471 LOC108271530,LOC108427638 coding downstream 340683 18615977 ~ 18623608 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding upstream 857 18970308 ~ 18976937 (-)
im:7152348 NA coding upstream 402979 19372430 ~ 19376164 (-)
trnap-ugg_1 NA coding upstream 410990 19380441 ~ 19380512 (-)
bcl6aa bcl6 coding upstream 574701 19544152 ~ 19552693 (-)
tbc1d23 tbc1d23,LOC107574489 coding upstream 987266 19956717 ~ 19983297 (-)
G29614 farp2 non-coding downstream 68486 18890717 ~ 18895805 (-)
G29612 NA non-coding downstream 77280 18883984 ~ 18887011 (-)
G29551 NA non-coding downstream 329934 18634078 ~ 18634357 (-)
G29542 NA non-coding downstream 348417 18614869 ~ 18615874 (-)
G29541 NA non-coding downstream 349567 18614357 ~ 18614724 (-)
G29678 NA non-coding upstream 14611 18984062 ~ 19049735 (-)
G29793 NA non-coding upstream 289499 19258950 ~ 19259178 (-)
LOC117596148 NA non-coding upstream 413863 19383314 ~ 19385251 (-)
trnap-cgg_1 NA non-coding upstream 416991 19386442 ~ 19386513 (-)
G29905 NA non-coding upstream 434957 19404408 ~ 19404621 (-)
trnap-ugg NA other downstream 147093 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 147479 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 147961 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 768663 18148228 ~ 18195628 (-)
G29279 NA other downstream 891382 18070987 ~ 18072909 (-)
glmnb LOC108272089 other upstream 1033908 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1390271 20359722 ~ 20429325 (-)
lepr lepr other upstream 2311913 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 2480095 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 3602981 22572432 ~ 22581943 (-)

Expression


Co-expression Network