LOC113538193


Basic Information

Item Value
gene id LOC113538193
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 24568575 ~ 24570619 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311017.1
aaaatgaccTGCCCACACTTCTTAGGGTGTTCATGTATGCTGGAGCAAGAAGATAAACGCATTACACTGCGGTATGTGCTGACATGAGTCAATATTTTGGAGCAATAGAATATaaggTATAACCATGACAGTATTCCTGTATTTCTGCGTTCTACTCCATTTCCTAAGCTGCTCTGATGCTCAGAACAATGGGACTAATGAAATTTATGGCAAAGATGTGACAGCAGTTCCAGAAACACTGCAAGCTACAACCACAGAGGTCTTTTTTGTTCAGAGTCAGATTGATATCATACCAAAAGGAGCATTTTCTAAAAACCCTCAACTagaaaaaattcatttttgggAAACACCTATATCTTCCATAGAAGAAGGTGCATTTGAAGGTTTAGAACATCTGAATACCCTTGAAATTAAAGGTTCCCAAGTGACATCTCTTCCTGTCGGTGTTTTTAAGAATCTGACCAACCTTCGGAAATTGATTCTGAAATCAAGCAAAATTCAAAGCCTAGAAAAGGAACTGTTTCATGATACCAAGAATCTTGAAATACTCCGATTGCAAGATAACAAGATTTCAACAATTGAAGAGGGAATATTTGATCACTTGGAGAATCTCACAGAGCTTACTCTTGCAAAGAACAATCTTACTTCCATCTCATCTTCCCTTTTTTCAAAACTCAATAAGCTGAAAATATTTAAGTTGTATGAGAACCAGctgacatcaatgcctgatggaatttttaataataaatcaaatctgCAGGAAATAGCCATTAATACCAACAGAATCACACGCATACAACCAGATTTGTTTCCAGATAAAAATATCTTGACAACACTGTTATTAGACAATAATCTCTTGACTGAACTTGCACCTGAGATATTTGTGGGTTTCTCCGCACTTAAAAAGTTAACACTGAATCACAATCAGCTCACCGCTCTCCCCCTTCCTCTTTTCAGAGAAACACAAAATATGGCTGAATTATTTCTGAATAACAACAATCTAACATTCTTACCTGCTGGGATTTTTCAGTCACTGAAGAAGCTTAAGAAATTACACCTGTCCTCGAATCAGTTTTCAACTCTTTCTGGAGATTTTTTTGATGGATTGGAGAAACTTTCTGAGCTCAATCTTCAGAATAATCTCATTGAATCACTGAAGTCTGAAAACTTCACAAACCTACAATCTGTTTCTACTCTCAAACTGGATAACAATAAACTCAGAACAATTCCAAGAGATGTCTTTGATTCTCTGCCAAAACTGAGGAAGGTATATTTGAACGACAATCCATGGCACTGTGACTGTAATCTGCTGTCCATGTACAAGTGGATGAAGAAAAATCCGGAAAAGATAAAGTCTTCTTCTCCAGAGGTTTGTAAGTACCCTGAGGATTTGAAAGGCCAATCGATCACATCTTTAAAAGAAGACCAACTGATATGTCCCACAACTCCAACCATTACAAACTGTTCCAACAACTGCCCTAATAAGAACAACTACTAATTCTGTAGCCACTACAA

Function

GO: NA

KEGG:

id description
K13023 CPN2; carboxypeptidase N regulatory subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311017.1 True 1515 mRNA 0.37 2 24568575 24570619

Neighbor

gene id symbol gene type direction distance location
LOC113538433 LOC108271906 coding upstream 900 24558933 ~ 24567675 (+)
rgs4 LOC108272266 coding upstream 728985 23836334 ~ 23839590 (+)
il12rb2 LOC108271892 coding upstream 1016631 23533178 ~ 23551944 (+)
il23r LOC108272282 coding upstream 1038191 23495748 ~ 23530384 (+)
trnaf-gaa_16 NA coding upstream 1092552 23475951 ~ 23476023 (+)
rtn4a LOC108271908 coding downstream 5062 24575681 ~ 24588531 (+)
LOC113538142 LOC108271661 coding downstream 1219345 25789964 ~ 25793678 (+)
LOC113538280 LOC108273248,LOC108436444,LOC103352837,LOC104926284 coding downstream 1250265 25820884 ~ 25840241 (+)
caskb LOC108273092,LOC106956946,LOC103475843,LOC108249344,LOC101469939,LOC108412427,LOC103147095 coding downstream 1285244 25855863 ~ 25969370 (+)
abcc4 abcc4,LOC107659955,LOC107678162 coding downstream 1423313 25993932 ~ 26050958 (+)
G32795 brinp3a.2,LOC108440126,LOC108271609,LOC107711116,LOC107732449 non-coding upstream 234120 24334199 ~ 24334455 (+)
G32782 NA non-coding upstream 308198 24259993 ~ 24260377 (+)
G32662 NA non-coding upstream 624115 23944239 ~ 23944460 (+)
LOC113538279 NA non-coding upstream 901642 23662954 ~ 23666933 (+)
G32502 NA non-coding upstream 953510 23614863 ~ 23615065 (+)
LOC117596090 NA non-coding downstream 78399 24649018 ~ 24650283 (+)
LOC117596060 NA non-coding downstream 192808 24763427 ~ 24764691 (+)
G33148 NA non-coding downstream 677227 25247846 ~ 25250585 (+)
G33192 NA non-coding downstream 1002163 25572782 ~ 25573315 (+)
LOC117596059 NA non-coding downstream 1010328 25580947 ~ 25635159 (+)
G32684 NA other upstream 547539 24020378 ~ 24021036 (+)
uhmk1 uhmk1,LOC107692420 other upstream 915020 23633606 ~ 23653555 (+)
tmem69 tmem69 other upstream 1965139 22597595 ~ 22603436 (+)
insl5a insl5 other upstream 3550708 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 3910495 20536973 ~ 20658080 (+)
LOC117598985 NA other downstream 82371 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 1186195 25756814 ~ 25784890 (+)
agap1 agap1,LOC108272907,LOC103044997,LOC107586321,LOC107688827,LOC107709574 other downstream 1694878 26265497 ~ 26408396 (+)
st6gal2b LOC108273345,LOC108272416,LOC107559918,LOC108437696,LOC107748583,LOC107688887,LOC103032506 other downstream 2043031 26613650 ~ 26649387 (+)
adam23a adam23,LOC107705602,LOC107748557,LOC107688856,LOC107660086 other downstream 3199177 27769796 ~ 27787602 (+)

Expression


Co-expression Network