si:ch211-201h21.5 (LOC108271508,LOC108427703)


Basic Information

Item Value
gene id si:ch211-201h21.5
gene name LOC108271508,LOC108427703
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20258821 ~ 20265493 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311038.1
AATGGCATTTTAAGGCTTTATTCACCTAGTGGACTGTAGTGGCTAGTACgcgatttgggacgcagccggTTAAACGGTCACTGACCTTAGTGCTCTGGGAAAGGACGAAGCAGCACGCGCTCATGAATTATTCATGAATTTCTTTCTAATCCGAAGTTGTTTTGGACGTCGCTCATCTCACTTTGCTGGAAGTTTTTGCTTAGACCAGCTGCACTTGGACGCACCAAAATCACCGCCCAACCTGCTCATTTAGGTAACCATTATGAGTCAGAAGCTGATGATTATCGACACTGACTGCGGCATAGACGATGCACAGGCTATAATGCTGGCTCTCGGCTCATCCAATGTGAAGATCCTGGGCATCACCTGCTGCTTTGGAAACACTGATGTAGACAATGTGTGTCAGAATGTGCTGCGTGTACTGCGTGTGTGTCAGCAAACTCAGATTCCTGTCTTTCGAGGGGCGGCCAGCTGTCTGGTTGGAGCAACAAACCCATTCAAAGATCATTTCGGGACAGATGGCTTAGGAGAcgttcttcaggacagagactCAGACACTtggaaaacacaaatacagaaagAGCATGCAGTTAATTCTTTGATCAGATTGGTGAATGAGCATCCAGGGCAGGTCTCTCTTGTTGCTCTGGGTCCACTCACGAATTTAGCTCTCGCTGTTAGAGTGGATCCCTGCATTCCCCAGAAGCTGAAGGATTTGTACATCATGGGAGGCAACATGGAAGGTAGAGGGAATCTGATGCCATGTGCAGAGTTTAATTTCTGTATGGATCCCGAGTCTGCCTACATAGTCTTAGAGGAATATGTGTGTCCCACACACATAGCCACCTGGGAGTTTACCTGCAGAAACAAGCTCTCTTGGGAGTTCTTTGATGAGCTGACTGCCCAGGACAGTGCAGCTGCTCGTTTTATGAAGATGATCACCTCTAAATGTTGGGCTTTCTCCAAGGAGCCTGGAAATAATGCAAAGGATGTACTTTTCGGGTCAGGGTTCGTGCCCTATGATGCCTATGCTGTGGCAGCATGTGTGGATGGCAGCGTGATCACAGAAAGTGTGGAGTGTGGTGTTCGCGTGGAGATCCAGGGAGAGCTCGGCCGAGGCATGATGGCACTGGATTTCACTGGCAAGCTGAAGAGTCATCGGGTGTTTGTGATGAAGACCTGCAACCTCACCAAGTTCAGCTCCATGCTCATGGCTTCCTTACAGCAACCGTGAGGAGTTAGAGCAGAGATAGTTGAGTGGGCGAAGGTTTCATATTCTACTCAtccattttggattttaaagaaaaagcttAAGAGGTCCTCTGATTAGCCTCATTTCACCTTCTGGACTGTTTAGGCATTTCTAAATTAGTATGAATTTATAGGACATCAGTAAGCACACAACTCTAGTGCCAAGCTGCCacaatcaaaacaaatccatttatgtttgtgtagtgttgtgtttgTAGGTTTCACACCTCAGCAATTgagaatggaaaatggaaatattATATTGCTCCATATGCATTTTCTGATAGTATGAAGTAGGAAGTATGAAGTCCGATAGCAGGGCCAGCCTCTCCGGAGCTGTAGCTGGTTTATGGCCTTCATCATGGAACCAGCTGTGTTAGAGGGAAGTGTTGATGCTAGTATATAGGGATACAATCAGgccatttgaaatttgaatttgatttctAATCAAACCGATTGTCTCAGTCTTTAGcccacacacattatacacaattTTTCTTTCCAGTCATATTTGTACAATGTGTTGTATTGTCTGCAGCCATGGTTTAAGATATATTAACAAAACTCAgaattgtatgtatgtgttataGAAATTACAAGTGTATATGCATCttataaaaataagaagaaaaaaaaagaacaacccAGTAAATATTGCTGCCTGATATGTTTATTTCATCCAACATAACGGATTTCTCACTCATGGTGACAAATGAACCATGTAGAAAACAAACCCCTTTCAACTCATTttgacattaaattaaaaaccaaTTTTTAGCAAATAAACCTTTCTTTAACCAGAatccaataaaaataataagttaaACCTCAAA

Function

NR:

description
inosine-uridine preferring nucleoside hydrolase-like isoform X1

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311038.1 True 2084 mRNA 0.43 6 20258821 20265493

Neighbor

gene id symbol gene type direction distance location
zgc:172121 LOC108271828 coding upstream 9363 20245574 ~ 20249458 (+)
atp1b1a atp1b1 coding upstream 51068 20199525 ~ 20207753 (+)
rpl5b LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646 coding upstream 146302 20104204 ~ 20112519 (+)
LOC113537321 NA coding upstream 148596 20110130 ~ 20110225 (+)
tp63 tp63,LOC107574491,LOC103365775 coding upstream 302787 19884761 ~ 19956034 (+)
actl6a actl6a coding downstream 49532 20315025 ~ 20324579 (+)
ndufb5 ndufb5,LOC107709185,LOC107659010,LOC107692354 coding downstream 63950 20329443 ~ 20333691 (+)
usp13 usp13,LOC107659032 coding downstream 70138 20335631 ~ 20359651 (+)
pde6d pde6d coding downstream 201656 20467149 ~ 20472065 (+)
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding downstream 207778 20473271 ~ 20480074 (+)
G30382 nme7,LOC107732015 non-coding upstream 24049 20233975 ~ 20234772 (+)
G30288 evi5 non-coding upstream 218847 20037735 ~ 20039974 (+)
G30224 NA non-coding upstream 340453 19918145 ~ 19918368 (+)
G30049 NA non-coding upstream 438450 19820142 ~ 19820371 (+)
G29999 NA non-coding upstream 692798 19565810 ~ 19566023 (+)
G30436 NA non-coding downstream 68250 20333743 ~ 20334121 (+)
G30442 NA non-coding downstream 95097 20360590 ~ 20361838 (+)
G30445 pex5l non-coding downstream 102320 20367813 ~ 20368152 (+)
G30448 NA non-coding downstream 107213 20372706 ~ 20373062 (+)
G30455 NA non-coding downstream 115277 20380770 ~ 20380982 (+)
LOC113543059 c11h1orf146 other upstream 238595 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 721624 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1171610 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1310084 18932683 ~ 18948737 (+)
trnai-aau NA other upstream 1441346 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 271480 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 749345 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2332102 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3368113 23633606 ~ 23653555 (+)
G32684 NA other downstream 3754885 24020378 ~ 24021036 (+)

Expression


Co-expression Network