trim63a


Basic Information

Item Value
gene id trim63a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26530903 ~ 26532518 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311050.1
ACTGGACCAGTAGATCAAAATAAACCTTGACaagaacagaaacacacaggagAGCTTTACACTCACGGAAGCTAGGATCCAGCGCAAAGAAAAAAGGACTGAGGATACGTATAGACATGGACATTCAGACAGGCCAAGTAGTGAGGGCCGTAGGTCCTATGGAGAGCCTGGAGAAGCAGCTGAGCTGCCCCATCTGCCTGGATATGTTCACCAAGCCGGTGGTCATCCTTCCCTGCCAGCATAATCTATGCCGTGGCTGCGCTAATGACCTCTACGACTCTCGTAACCCCTACCACTTCTCAGGAGGAATCTTCCGCTGCCCAACCTGCCGCTTTGAGGTGGTGCTGGACCGCCATGGTGTCTATGGGCTTCAGAGAAATCTCCTTGTAGAGAACATAATTGACATCTACAAGCAACAACAGGAGAACAgcggtggtggtgatggtggccTGGAGCCTCCTTTGAAGGCCAAGGATACAAAAGAGCAAATGTGCCAGGAACATGCAGACGAGCGCATCAACATCTATTGTATTTCCTGCCAGGTCCCTACATGCTCCATGTGCAAGGTGTTTGGCCAGCACAAGGACTGCAAAGTATCCACCCTGAAGAGCGTCTATGAAAACCAAAAGGCTGAGCTCCAAAACTCAACTGAGTTGCTTGCAGCTAGCAACAGCTGTGTGCAGGCCATGCTAGTGCAAATGGAGGACATCTGCAAAGCTGTGGAGGAGAACAGCCAACTACAGAAGCAGAGACTGGGAGAGAAGTTTGACTTACTCTATGCAGTCCTGGAAGAGCGTAAGGCCCAGCTGCTGGAGCAGATCACACAGGAGCAGGATGAGAAGGTAGCAGTGGTGCAATCGCTAATTCAGCAGTACAAAGAACGGTTGGAAGCTAGCAGTAAGCTGATGGACCAAGCCACGCAAAGTTTGGACAACAGCAGCATAGCTGAGTTCCTCATCAATGCCAAGAAGCTCATTGCAGAAGCCAAGGACACAGCCAAAAACTCCCAATTACAAAGGCCAGAACTTGGCTTTGAGAAGATGGACCACCTCACACTGTTTACTGAAGAAGTAGAGGCCATTCTTGCAAAAATTGACTTTGGtgcagatgatgatgaggaggaagaagaggaggaattTGAAGAggcagaagaggaagaagaggagtaAGCAATAGTAATGAAGAACTTTGTTTGATACAAAGACGTTTTATGGAGAAAGGGtagatgaagaaataaaaagagccCTGGTTAGCACAGGAACACAAAATAGCTGCTTTtgaaaactgtgatgagtgtgtgcaatcttaaaagcagttttttttacataacaaattGCACCATTTCCACTTTCCACTTGACTTTTATACTTTTGTATTTATATGaatgttcatatttaattatttctgttatctttagTGTAGATGACAAGGTTTACACCTGAATATTAGATTTGATAGGATTGTTAAGTCAAAACTAGATTTGCTAGCTGTAGAATACAGCTGTTAAAATTTAGTTTTAGTGTGTATGTCAAAATGTTTGAATACTTGAAATGATGCAGTTGACTCATGAACTACTGTAAAAGTTTATTTTCATTGGATAATTCAATGGGAATAAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM63-like isoform X4

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311050.1 True 1616 mRNA 0.44 1 26530903 26532518

Neighbor

gene id symbol gene type direction distance location
ackr3b ackr3 coding upstream 41604 26484650 ~ 26489299 (+)
faimb LOC108273096,LOC108437684,LOC103044688 coding upstream 266616 26262825 ~ 26264287 (+)
slc19a2 slc19a2 coding upstream 290837 26232829 ~ 26240066 (+)
psmb3 psmb3,LOC102792592,LOC107688824 coding upstream 300987 26222530 ~ 26229916 (+)
LOC113538326 unc80,LOC107688825 coding upstream 319723 26141682 ~ 26211180 (+)
mlpha mlph coding downstream 7929 26540447 ~ 26553487 (+)
lrrfip1b lrrfip1,lrrfip1b,LOC107688829,LOC107596315,LOC107677622,LOC107738309 coding downstream 24498 26557016 ~ 26606730 (+)
fhl2b fhl2b,fhl2a,LOC108273234,LOC108266723,LOC108437838,LOC107716797 coding downstream 181466 26713984 ~ 26733596 (+)
tgfbrap1 tgfbrap1,LOC107596311,LOC107738304,LOC107688833,LOC107660108,LOC107748533 coding downstream 203971 26736489 ~ 26759429 (+)
inpp4ab inpp4ab,LOC108273053,LOC108437834,LOC107566790 coding downstream 666501 27199019 ~ 27268197 (+)
G33410 NA non-coding upstream 119447 26411256 ~ 26411456 (+)
G33397 NA non-coding upstream 213116 26313015 ~ 26317787 (+)
G33395 NA non-coding upstream 226159 26298996 ~ 26304744 (+)
G33383 NA non-coding upstream 232121 26243942 ~ 26298782 (+)
LOC117595850 NA non-coding upstream 315470 26214465 ~ 26215433 (+)
G33440 NA non-coding downstream 25370 26557888 ~ 26558405 (+)
LOC113538244 NA non-coding downstream 277940 26810458 ~ 26826974 (+)
G33969 NA non-coding downstream 358589 26891107 ~ 26891387 (+)
LOC117595819 NA non-coding downstream 828805 27361323 ~ 27375825 (+)
G34207 NA non-coding downstream 1049380 27581898 ~ 27582101 (+)
agap1 agap1,LOC108272907,LOC103044997,LOC107586321,LOC107688827,LOC107709574 other upstream 122507 26265497 ~ 26408396 (+)
trak2 LOC108271640 other upstream 746013 25756814 ~ 25784890 (+)
LOC117598985 NA other upstream 1874655 24652990 ~ 24656248 (+)
G32684 NA other upstream 2509867 24020378 ~ 24021036 (+)
uhmk1 uhmk1,LOC107692420 other upstream 2877348 23633606 ~ 23653555 (+)
st6gal2b LOC108273345,LOC108272416,LOC107559918,LOC108437696,LOC107748583,LOC107688887,LOC103032506 other downstream 81132 26613650 ~ 26649387 (+)
adam23a adam23,LOC107705602,LOC107748557,LOC107688856,LOC107660086 other downstream 1237278 27769796 ~ 27787602 (+)
ten1 ten1 other downstream 1446279 27978797 ~ 27983171 (+)
ldlrb LOC108273208 other downstream 2588924 29121442 ~ 29176269 (+)
G35262 NA other downstream 2924357 29456875 ~ 29457426 (+)

Expression


Co-expression Network