dzip1l (LOC108271535)


Basic Information

Item Value
gene id dzip1l
gene name LOC108271535
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18600959 ~ 18614825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311144.1
GGAAACCGTTTGTGCTTCTCTGTAATGCTCCACCCAAAGTGGAAGTAAAACTCCTTGAGCAGCAACACGGTGCTGTTTTACATTTCAGCCTGAATGCTTCAGTGTAAAACTTTAATGTTTGTGCTCAGGGCTGTGTGGCTGAAAGTCTCTGGCTCGGTAACTGTGCAGCGGAGAGCCGGAGCTGAGAAGTGGTCGATCGCCATCATCTCTTCCTTTTGTCCCTAAATCTCGTATCATGCCAGGACAGATCTCCCCAACCTCTCCTTCCTGGAGTGCCTCAATCCCCACTCAGCTGTTCCACTTCCGTCTCCGTATTGAGCCGATTGACTGGCGCCGTATGGCAGCGCTGGATGTGGACCGCgtggagagagaaacagacataaATGTGCTGCAGGAGTTCATCAGTTCTGTGACTTTCTGTGCCGTGGAGGGCGAGCGGTGTCCGCAGTGCCGCTGTCCAACTGACACAGCGCTGCTAAAAGTTCTGCGCATGTCACAGCTCAGCACAGAGTACCTGCTGCACTGCCAGGACTATCTGAGCTCACAGGTGGCAGCGCTGGAGGAGCGTCTGCAGGGGGCATTGTCTCAGGCACTGCGCGAGGAAGAGGAGCGAGCACGACTGGAGAAAGAGCTGCAGGAGGTCAGGCTGGAGAGCCGGCGCAGGAAGAAACTCATCGCCACTCAACAGCTCCTCCTGCAGTCCAGTGCCAATAATTACCACAAGTGCCAGTTCTGTGAAAAGTGTTTCGTCAATTACTCTTACTTACAGTCTCACGTTCAGCGCAGGCACCCTGAGATCACTGATGCAGagaaacagaagaagatGCAGGTGGAGCAGATGAAGGAAGGGTTGGAGGAGCTGAAGGAGAAATTGAGACTGACTCAGAGTCGACTcgaagcagagagagaggcagatgtGTATCGGAGACAGCAGGAGCTGGAGGACCGAGAGGTGTCAGACCGGGAGATGATAGAGAGATacaaagaggaggagaaaaggaCATTTCAAGATGAAATTGATGGCCTGCGACGGCTTCTTCACCTGGAgtttgaacaaattaaaaccAAGAGTGTCTCTATAGAGGCTaAACTGCATGAGctggagagcagagagagaaacatgtcTAATATAAGAGGTGAGGATGAATTTGAGAAAGAACGAAGgaggatcagagagagagagctgaaggAGCAGGTGGTTCAGAAGAAGAATAAatggaagaagaaaatgagagagctgCAGAACAGGCACCAGCTGGAGAAAGAAGAGctggaaagtgaaaatatcaggctGCAGAAGGCCTTGTctttggaggaaagcactaGTTCTAGTGTGAACTCGCTGAAGCAgcaggttctctctctctcctctcggctcagagagagagacacactcaTCCACTCCCAGAAAAAGAAGaTAAAGAAGCTGATGTCCAGATCACTGTCAGAGCCACTTCCAAATATGGCTGCTCAGAACTctccagaagaagaagaaggagatgaTGAAAAGGGAGAGATTCTGGAAGAATTTGTGGCAGCCCAAGTGGAACCAGTGAGAGGAATCCCAGTGCAGAGGAAGAATTTCAGATCCATCGTGAAGAAAAGCCTGCAGAAGAAACTGGAGAAGATGGGACTAAGAAAGGGCACTAAGGGAATCTCTACTCAGACCCTGAGGAGTCTAATCTATGAGCGAGGACAGACATTTAGGAGTCAGTCACAATTGCAGGATTTGAGAAACAACCTTGAAGACCAGCTACAGCAAAGAGTGAGAGAGCGGCAGAGAAGCCAGGGAAAATCTAcgcctaacacacacatgcagcagagaaagaagctTCATAGTCCAGTCATGGCACAGAGCCCTAGACACGGAAAATTCAGCCCCAAAAATGCCCCACAGAAACGTGAGATTCATCAGCCTCCTACAGCTGCACCACGCTCCAAAGCTCCTTCACTCACACCGATTCTACCGGTACAGCAAAAGAAGAACAGTACTCCACCCTTCAGCTCAGAAGAGGAGGATGACGACGAGTCAGGAGAGGACAGTGCCTACATCACCAGCTCTCGGGACAAACCGTCCACCTCTGTCCACCTCACGCCAACAAAGGAACAGCAGAGAGCAGGGCACGAGCTCAACTGGTCAGACAGCGCTGATTCAGATGAAtcagacacacaaaaaccacAACAGGCTTTTAGTGCACATGGTTCAGTTGTTCAAACGCTGACAAAGAGTTTAGAAAAGCAGCTGAGCAGCAGCATCACAAATCCTGTAGGAGGAATACGAGTGCTGCCTCCGGCCTCTCAGCCTTCACCTCGACCTTCCATCATCAAACAACAAGCGGTGTCTGAGGAAGAGAGTGATGTGGATTTGTCCTCCATCGAGGAGCTCACTGCTCCGCCCAAGGCCGGGCGCAGGACCTCAGATGTGGGCATCACCTCAGGCACTAGCGTATGGAGCTCAGCTGCCAGCAGACCAGGAGCATGGTGAAGGGCTTCAATACTCTTCAATTAACTcttcagttttcattttcatttaataactcTTAAGTCTTAAAACCATCACTTACCTTCTTTAGTTAGCACTTACATGCACATATTATACTGTTTATCTTTAATATGGAAatgtgaattaaattaaaattaaattatatttaagttaaattaaatttaagggCCATTTTATGACACTTAGCCATGACAAGagaatttaatgatttaatcagGCTCATGCTACATTACATGTAATAGTTTGTCTGCAGATCATTATATATTTCAAATGAAGCTAAATGCAagtgaatatttaaatgcaataataataataataataataataataatatggcaACTTTCATATGTGCCATTATTTTAATCTTGAGGGTTTTTGATTCATCTGTGTGCATGCAcatatgtatgtgcatgtacaGGTATTATCACTGTTTGCTGAAAAAACAGGTGAACCTGTCAAGTTAAAATCTTAAAGTGCTTTACAGGAATAGTAGAAAATAATATGTGATAATTAAAGAAAGATTATAAATTGAAAAGAATGTAAAATTAAAGACAAAATTAAGaatgcataaaacaaaaa

Function

NR:

description
zinc finger protein DZIP1L-like

GO: NA

KEGG:

id description
K16470 DZIP1; zinc finger protein DZIP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311144.1 True 3082 mRNA 0.46 16 18600959 18614825

Neighbor

gene id symbol gene type direction distance location
LOC113536767 LOC108272161 coding upstream 187004 18298375 ~ 18413955 (+)
LOC113532395 kyat3,ccbl2,LOC100332215 coding upstream 454042 18139055 ~ 18146917 (+)
barhl2 barhl2,LOC107749991 coding upstream 678140 17918400 ~ 17922819 (+)
znf644b LOC108271612 coding upstream 759977 17804545 ~ 17840982 (+)
tgfbr3 tgfbr3 coding upstream 833679 17666584 ~ 17767280 (+)
LOC113527312 NA coding downstream 226612 18841437 ~ 18857162 (+)
farp2 farp2 coding downstream 243614 18858439 ~ 18917006 (+)
atg4b atg4b coding downstream 336864 18951689 ~ 18957780 (+)
kif1aa kif1a,kif1aa,LOC108427666,LOC107593169 coding downstream 373178 18988003 ~ 19049750 (+)
scly scly coding downstream 437297 19052122 ~ 19060672 (+)
LOC113530672 NA non-coding upstream 133639 18464884 ~ 18467320 (+)
LOC113536874 NA non-coding upstream 240924 18358202 ~ 18360035 (+)
G29281 znf326 non-coding upstream 515315 18083719 ~ 18085644 (+)
G29106 NA non-coding upstream 836186 17694754 ~ 17764773 (+)
G29105 NA non-coding upstream 912224 17683821 ~ 17688735 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding downstream 73828 18688653 ~ 18691007 (+)
G29640 NA non-coding downstream 435401 19050226 ~ 19050438 (+)
G29641 NA non-coding downstream 435999 19050824 ~ 19051043 (+)
G29656 NA non-coding downstream 577724 19192549 ~ 19195409 (+)
G29674 NA non-coding downstream 585490 19200315 ~ 19202099 (+)
tomm6 tomm6 other upstream 2199848 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 2418650 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 2497711 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 2810515 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 3296465 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 159945 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 202577 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 317858 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 446272 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 919520 19534345 ~ 19537197 (+)

Expression


Co-expression Network