LOC117599264 (zc3h3)


Basic Information

Item Value
gene id LOC117599264
gene name zc3h3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22390253 ~ 22392793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311946.1
GTTATTTTTTGAACATCTGATTGGACAGCTGTGTTGGAACGTCAGCCACACACGGAACCGTCGCTGTTTAATGACGAAAGCGACCTGGATTGAAATATGGCCGAACGCGAAGCATTGGAAAGGGAGATAGAGAAGTTACAAAACCTTATTAAGGACCACAAGAGAGTTCATGGTGATGCCCCGTCAAGTTCAACTCGGGGATTTTCTACAAAACGTGGCCTGGGAAGGGGTCAGGGTCACAACCCATATTACGCCACCTCATATTCACATCAGCCGCAGCCATATGCACCTCACTCCTCCAGCCAATGGAAGAAAAAATACTCACTCAACAACAAGACCACCAGAGCTCCTGGAGGAAGAGCCTCACAGATTTCTGAGCCGGATCTAAACAAGACCGGACAAGTCAAGGGTGCGGCACCTGatgcttgctctctctctggtgtCAGTAAGGTTTTACACGAGGGGACGCATAAGGCAAGCACGGTGCCTTCATGCAGCGTCATGGGAAAGGAGTCATCACGAGGGAATAACAGAGTCCCAGCTGATGGTGGGGACAGAACAGTATTAAAACCAAGGACTAATATTGAGTCCatcacagacctgtcagagtcgGCTTTAGTAAAGTCTGGACAACAGAGTGGACTTGATGGGAAGATGAGACAAAGTGCAACATCAGATATAAGGTGTTCAGCTACTTCAGCTGTTCTTTTATCTGAGGAGTCCAGTGCCTTTAACAAAAAGCGGACTGCACTGCCCCAAGTGAAATCCTACCTCACAAGGACTGTTTCAAGTAATAGGACTGTAATAATGGCTACTAAAGACTTACCAACTCTGACTTCCTCTGTGCCTACAGCGAAAGTTAGGCTTAAAGCAGATTTGGCTCCAGAGATTCAGGCAGCTTTGTCTCCTCATAAGACATCTCGGTTTACCTGGGTGAAGAGCCAAGAGACGGAGACCAGCCAACCAAGATCAGAGATCCACCAGTTTCCACCAAGCTCAGTTTCAGCGTCTACTGCTTCTCCAGTGGTGGccaaacacacccacacttCTAGCAAGAAGCTTCATCGCAAGCTCAGTTTTTCCCCCAGCACCCCTAGGACCTCGAAGTACTCTTGGGTGTCGTCCTCCTGTTCCCCTACAGCAGCTGCCAAATCAGCCATAGCTAAACTCCCGCACAAGCTCTTTTCACCCAAAGCTCTTAAGGTGCCTGGAAAaacagcaaaggagggactAGAAGGCAAGAAACTCACCACTACCGCTGTCATATCAAAGAGGGCTAAAGTCAGTGGAGGTGCTTCTACATCTCACGCGAGCCACGGCAGTCGCTACCGCTGGAAGGCAGTTGCAGCAACCGTCCACTGCGGTTGTGCGGGGGACCACGCCGAGGTCTTCTCGAAAGAGCTCAGTGTACCGATGGACTGCGCAGAAGGACGAGAAGGAGTCGGCATCACCGGCATCTCGAGTCCAGCACAGTCCTTCCACTCCTCTGCCTAGCAGTGGATTCAAGCTGAGGAGCAGAACCAAGATCATCAGGCGAT

Function

symbol description
zc3h3 Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human ZC3H3 (zinc finger CCCH-type containing 3).

NR:

description
PREDICTED: zinc finger CCCH domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311946.1 True 1538 mRNA 0.50 2 22390253 22392793

Neighbor

gene id symbol gene type direction distance location
mafaa mafa,mafaa,LOC107556987,LOC107591187 coding downstream 68203 22319135 ~ 22322050 (-)
LOC117599932 NA coding downstream 190619 22157708 ~ 22199634 (-)
LOC113538524 NA coding downstream 240015 22144203 ~ 22150238 (-)
usp1 usp1 coding downstream 343795 22035213 ~ 22046458 (-)
angptl3 angptl3 coding downstream 393532 21993695 ~ 21996721 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding upstream 91299 22484092 ~ 22514058 (-)
LOC113538473 NA coding upstream 154461 22547254 ~ 22552299 (-)
pik3r3b pik3r3,pik3r3b,LOC107717145,LOC107692397,LOC107594617,LOC107675943,LOC106584012 coding upstream 380333 22773126 ~ 22964855 (-)
pomgnt1 pomgnt1 coding upstream 655793 23048586 ~ 23062081 (-)
prpf38a prpf38a,LOC107731643,LOC107684051 coding upstream 670734 23063527 ~ 23071529 (-)
G31755 NA non-coding downstream 74247 22315806 ~ 22316006 (-)
G31742 NA non-coding downstream 163593 22224385 ~ 22226660 (-)
LOC117599242 NA non-coding downstream 192585 22196594 ~ 22197668 (-)
LOC117599244 NA non-coding downstream 214513 22173351 ~ 22175740 (-)
LOC117596032 NA non-coding downstream 257555 22130425 ~ 22132698 (-)
G31916 NA non-coding upstream 145530 22538323 ~ 22560608 (-)
G31934 NA non-coding upstream 172499 22565292 ~ 22568836 (-)
G32157 NA non-coding upstream 318420 22711213 ~ 22785690 (-)
LOC113538262 NA non-coding upstream 597654 22990447 ~ 22995189 (-)
G32244 NA non-coding upstream 649738 23042531 ~ 23042762 (-)
raver2 raver2 other downstream 858825 21449546 ~ 21531428 (-)
lepr lepr other downstream 1072430 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 1960928 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 2376159 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 3573055 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 179639 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 189510 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 829500 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1222661 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3287297 25680090 ~ 25738817 (-)

Expression


Co-expression Network