LOC113545866 (LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668)


Basic Information

Item Value
gene id LOC113545866
gene name LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3589067 ~ 3613541 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312081.1
GAAATCTGCTGAAGATCTGACTTATGCAACATGGAGTTGGTGTGGAGATCTGCGAGTGTGAACTCAGGATGAagatcctcctcatcttcaCCCTCTGTCTGATCTCAGATGGAGGAGCCTCCAAGGAAGTAACAGGATATTCAGGAGGAGGAGTCCTTATCAAGTGCAAGTATGGTGCAGAattcacacaaaataaaaaatatttctgtaaggGTTCAAGGCCAGGCTGTTCTGACCAAATAAAGACAGAAGCTAAAAATGAGTGGATAAATTCAGGAAAATTCTCATTGTTTGATGACACCAAATCAGCAGAGTTCAGGGTGATGATCAGAGAGCTCACTGTACAGGACACTGGGACGTACCAGTGTGGAATTGATATAAATTTGAGGAACAACATTTACACACCGGTGGAACTGAAGGTAAAGGAAGTTTCAGGGGGCTTGATCTCTAGAGAAGTGAGTGCATATGCAGGGGGAGGATTCAACATCAAATGCAGATATGAGGATGAATATAAAGACAAACCAAAATCTTTCTGTAAGATCGGAACACATCAATGGTGTTTTAATCgaacagaaacaaaactaaacagtgAATGGTCACACGATGGCAGATTCTCAGTTCTTGACAACAGAAGTGCAGGATTCTTCAATGTGTTTATCAGACAGCTGATTACGGAGGACACTGGAACATACGCGTGTGCCGTTGCTGTGTCTGATGAAATAGAGACCTACACTGTAGTGAAGCTGAATGTAAGAGAAGATCTGTCCTATGAGAAGTCCATCAGCAAGACTGTCCATGTAGGAGGAGATTTGAACTTCAGCTGTAAATACCCAGTATCCCTCGGTGGCAACAAGTTTCTCTGCAAGAGGCTGCAAACTGCTGCTTGTTCTCATAAAGCACCTGTTAAAGAAAGTAGGAAAGATGTAAATATGGGGAAGTTCTCCCTGTATGAtgacagtgcaaaaaaaatcttcaatgTGAGTATTAGAAATATAACTAAGCAGGACTCTGGGGAATACTGGTGTGGAGCTGAAGCAGCCTGGAAATCTGATCATGGATACAAGGTTTATTTCACACAGATCAACCTGACAGTTACTGATCCACGTGTCTCAGATTCAACCTCGACACCAACACaaacttcatcatcatcatcatcatcatcccggCCTACATCAGCTTCTCCTCCAGCAGGATTTCCAATTTTCACTGTGATCACTGTGTCTGTAATTCTACCTCTGCTTCTGACTGGAATCATATTCCTCACTTTTACTCTACTAAAGAGATGCAGGATGCAAGCGACAGACAACCACCCGCATGCCATACAACTGAAACGCAGCTCGTCTGCTAATCGGAATGGAGTTGGTGTGGAGATCTGTGAGTGTGAACTCAGGATGAAGATCCTCTTCATCTTCACCCTCTGCCTGATCTCAGATGGAGGAGCCTCCAAGGAAGTAACAGGATATTCAGGAGGAGGAGTCCTTATCAAGTGCAAGTATGGTGCAGAattcacacaaaataaaaaatatttctgtaaggGTTCATGGCCAGGCTGTTCTGACCAAATAAAGACAGGAGATAAAAATGAGTGGATAAATTCAGGAAAATTCTCATTGTTTGATGACACCAAatcagcagtgttcagtgtgatgatcagagagCTCACTGTACAGGACACTGGGACGTACCAGTGTGGAATTGATATAAATTTGAGGAACGACATTTACACACCGGTGGAACTGAAGGTAAAGGAAGATCTGTCCTATGAGAAGTCCATCAGTGAGACTGTCCATGTAGGAGGAGATTTGAACTTCAGCTGTAAATACCCAGAATCCCTCAGGAATGACCCCAAGTTTCTCTGCAAGAGGCTGCAACCTGCTGATTGTTCTCATAAAGCATCTGTTAATGAAAGTAGGAAAGATGTAAATATGGGGAAGTTCTCCCTGTATGCTGACAGTGCAAAACAAATCTTCACTGTGAGTATTAGAAATATAACTAAGCAGGACTCTGGTGAATACTGGTGTGGAGCTGAAGCAGCCTGGAAATCTGATCATGGATACAAGGTTTATTTCACACAGATTAACCTGACAGTTACTGATCAACGTGTTTCACATTCAACCTCGACACCAACACAAACTTCattaccaccatcatcatcatcatcgttatCTTCATCATCTGACCTTATACAAGCTTCTCCTCCAGCAGGATTTCCAGTTTTCACTGTGATCACTGTGTCTCTAattctgctgctgcttctgatAGGACTCATATTCCTCACTTTGACTCTACAAAAGAGACGCAAGATGCAAGCAGGTACAGCTTCTCTTGACCAGTGTTCTGTCCAAAATTCAGAAAATGACCAAGGGGTTCCACTTGCTGTCTATGAGTATGAGGAGATTAACGACACCAGACGCCTTTCTATCTCAGTTGCTGGAACGTCCACAGAGTTCTCTACTGTTCAACTACCCACAATCCCTTCTGATCCTCAAACTATTTATGCAAACACAGAGTTACccacaagtccctgtgattcTGCTGTTTATTCTACTGCTCAACTAGCCCCCTCCTGATCAGGACATCTACTCCACAGCTCAGTTACTCACATGTCTCTCAGCTGAGAAATTTGACTTGCTGAAGGTCTGACTTATGCAACAGTGAGTTTTTACTCCAATGCCACTAGCTCTAATAATGCAGTTCCACAGATGAAGGAAGACGTCTCTTCTTACTATGCTTCAGTCAGTCACGTTACTTCATCTGTTTAGTTTAGCATCATTAGGGCTCCAATCATGTGTCATTTCATGTGTCATTGGAACTCTACTGTTTTGTTCAGATAGCCTTTCACTTTATACAATGAAGACACCTTGTTCTTATTCTGCttattctttaaaatgatcCATTCCCATAGTTTGCACCCTGAGCTAATCTACATGATATAAGTAACCTATGGGTTTTAATCTGAATTACCTGATAACTGCTGGCCATTATCCTCACACCTTGTTTTATGCTGGAGGCTGTTATTTCCTTCTGTAAGAGTGATAAGAGCAGTTCATTTTTGTTCACATGCCAACAGCCCAAATGTATCAGGAGGTATGTGATGGAGCTCTGTCAGGTAGCCAGAATCCTGCAGGCAGTGTTAAAGACCAGTCACAGTCACTGGTTGAATGACTGATCCTGGTGGTTTTATGCTTCCTGAAGATGTTTCTGCACAATGGGGCCTTCACCTGTATGTGTTCCTGAATTCATGTGGGCCAGACTGAGGAGGGCAGTGCTAATACGTGAGCTAGTGAGTCTCAGACGCAgatcttttaatttttattctgaTGAAATTATATTCTATCcctcttcagaaaatcttccttcttcatgtaacatGTTTTGATATGCACATGATTCTGACAAATCAATGAATCTGCAAATTAGTCTATGACATCAACTGGTGACTTCTAGTGGCTTTTTGAGCATgtattagctactttcccctgcaAAGGTGTGGCAAAACTTCTCTCGGGCAAAATGTAGACCCTGACGTAGGGAAATGaagtgtgtctcagtgctcagtgctcggcAAACTGAAGTGCACTCGTGTGGAAGTTTCTCTACACTCTTACTCTTTTTTAATGATCACGCTCACTGATACTGTTCTGTGCCCTCATATCTGCTGTTCTCCAGCTCTCCATTTCATAGTAGAGATACTGCTTCTGCCAAGTGTGCTTAGTCAGAAAcatattaatgtgtattattgcttttttatttgataa

Function

NR:

description
PREDICTED: polymeric immunoglobulin receptor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312081.1 True 3758 mRNA 0.42 15 3589067 3613541

Neighbor

gene id symbol gene type direction distance location
LOC113545865 NA coding upstream 44532 3540809 ~ 3544535 (+)
sema5bb LOC108271639,LOC108430840 coding upstream 73984 3448150 ~ 3515083 (+)
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding upstream 197498 3377514 ~ 3391569 (+)
gad1b gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324 coding upstream 251133 3297314 ~ 3337934 (+)
erich2 LOC108271660 coding upstream 294555 3283888 ~ 3294512 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding downstream 20555 3634096 ~ 3649254 (+)
aamp aamp,LOC107750832 coding downstream 53735 3667276 ~ 3681466 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding downstream 73080 3686621 ~ 3704908 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding downstream 241419 3854960 ~ 3920608 (+)
dzip1 NA coding downstream 356244 3969785 ~ 4005335 (+)
LOC117599318 NA non-coding upstream 206471 3379891 ~ 3382596 (+)
G20868 NA non-coding upstream 235382 3331762 ~ 3353685 (+)
LOC113545973 NA non-coding upstream 370356 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 378136 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 436553 3152314 ~ 3152514 (+)
G21136 NA non-coding downstream 35790 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 40210 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 53204 3666745 ~ 3666972 (+)
G21178 NA non-coding downstream 68440 3681981 ~ 3682254 (+)
G21197 NA non-coding downstream 99766 3713307 ~ 3714991 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 1424 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 10759 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 221780 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 395606 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 525040 3053331 ~ 3064027 (+)
LOC113545962 NA other downstream 115111 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 661532 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 738136 4351677 ~ 4351748 (+)
spega speg other downstream 1140725 4754266 ~ 4759645 (+)
G21835 NA other downstream 1474593 5088134 ~ 5088578 (+)

Expression


Co-expression Network