fam210b (fam210b,LOC102797503,LOC106566122)


Basic Information

Item Value
gene id fam210b
gene name fam210b,LOC102797503,LOC106566122
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3634096 ~ 3649254 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312086.1
ATGACCTTGAGGTTTTTGTTATCTTCGCCTGAGATAAATCGCCTCAGAAAGCCCGGGTCAGTCGCCATAAGAGTAGGAAGAGACAATGTTTCTATTTCGAGGAGCGAGGTCTGTGGTTCCTTCATCACTGAGGTACTGCTTTCTACAAGCCCACAGGGAGGAGCTGAAAAGCCAGAGCCTGAGaaaaagcagaataaaacaaaagagctgAAGAAGATTTTTAAGGAATACGGGGCTGTTGGTGTTTCATTTCACATTGGAATATCTCTGATTTCTCTTGGAATTTTCTACATTGCTGTGTCTAGCGGGATCAATATGACAGCTGTCCTTTCCAAGCTGGGCTTTAGTGAATCTGTTGTTCAGTCGAAGATGGCTGCTGGCACTAGCACATTTGTGCTAGCTTACGCTGTTCACAAACTCTTTGCTCCATTTCGGATCAGCATCACTCTTGTGTCTGTACCACTCATAGTACAGTATCTTCGGAAAACAGGAATTTTCAAATCCTCACCACCTCGTCTGTGAACAGGCATGTTTCCAGTGGTGTACTGAGtgttcactatatatatatatatat

Function

symbol description
fam210b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human FAM210B (family with sequence similarity 210 member B).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312086.1 True 574 mRNA 0.43 4 3634096 3649254

Neighbor

gene id symbol gene type direction distance location
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding upstream 20555 3589067 ~ 3613541 (+)
LOC113545865 NA coding upstream 89561 3540809 ~ 3544535 (+)
sema5bb LOC108271639,LOC108430840 coding upstream 119013 3448150 ~ 3515083 (+)
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding upstream 242527 3377514 ~ 3391569 (+)
gad1b gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324 coding upstream 296162 3297314 ~ 3337934 (+)
aamp aamp,LOC107750832 coding downstream 18022 3667276 ~ 3681466 (+)
nelfcd nelfcd,LOC107685805,LOC107554192,LOC107666106 coding downstream 37367 3686621 ~ 3704908 (+)
gnas gnas,LOC107596786,LOC107729747,LOC107708144,LOC104936173 coding downstream 205706 3854960 ~ 3920608 (+)
dzip1 NA coding downstream 320531 3969785 ~ 4005335 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding downstream 411637 4060891 ~ 4110323 (+)
LOC117599318 NA non-coding upstream 251500 3379891 ~ 3382596 (+)
G20868 NA non-coding upstream 280411 3331762 ~ 3353685 (+)
LOC113545973 NA non-coding upstream 415385 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 423165 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 481582 3152314 ~ 3152514 (+)
G21136 NA non-coding downstream 77 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 4497 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 17491 3666745 ~ 3666972 (+)
G21178 NA non-coding downstream 32727 3681981 ~ 3682254 (+)
G21197 NA non-coding downstream 64053 3713307 ~ 3714991 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 46453 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 55788 3550225 ~ 3578308 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 266809 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 440635 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 570069 3053331 ~ 3064027 (+)
LOC113545962 NA other downstream 79398 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 625819 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 702423 4351677 ~ 4351748 (+)
spega speg other downstream 1105012 4754266 ~ 4759645 (+)
G21835 NA other downstream 1438880 5088134 ~ 5088578 (+)

Expression


Co-expression Network