LOC117599286 (rabl3)


Basic Information

Item Value
gene id LOC117599286
gene name rabl3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4442811 ~ 4443641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312090.1
TTTTTGCATCCTCAACCTAGCTAGTGATAGAGGAAACAAAAATGTCCTCGCTTGACAGAGTAAAAGTATTAGTCTTGGGAGATTCAGGTGTTGGAAAGTCGTCTTTAGTTCATCTGCTGTGCCATAACCAGGTTTTGGGAAATCCTTCATGGACAGTTGGTTGTTCTGTGGACGTCAGGGTCCATGACTACAAAGAAGGCACGCCAGAAGAGAAGACCTACTACATTGAACTGTGGGATGTTGGAGGCTCTGTGGGAAGCGCCAGTAGTGTTAAAAGCACCAGAGCAGTTTTTTACAATTCAGTTAATGGCATTATTCTAGTTCATGATCTGACCAAcaaaaaatcctctcagaatcTGTATCGCTGGTCAATGGAGGCATTAAACAAAGATTCCTCTCCTACAGGGGTCATCGTGTCGAATGGGGATTATGACAGAGAGCAGTTTGCAGACAACACCATCCCTCTCCTGCTAATAGGCACCAAGTACGATCAGATCCCTGAAAACAAGAGGAATGATGTCCTGACTCGCACCGCCTTCCTATCTGAAGACTTCAACGCAGAGGAGATCAACCTGGACTGCACAAATCCACGCTACTTTGCTGCTGGCTCATCTAATGCTGTAAAACTGAGCAGATTTTTCTTCTGGTTTatctgtgactga

Function

symbol description
rabl3 Predicted to enable GTP binding activity; GTPase activity; and protein homodimerization activity. Predicted to be involved in several processes, including lymphocyte differentiation; regulation of Ras protein signal transduction; and regulation of protein lipidation. Predicted to act upstream of or within proteolysis. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RABL3 (RAB, member of RAS oncogene family like 3).

NR:

description
rab-like protein 3

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07933 RABL3; Rab-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312090.1 True 662 mRNA 0.45 2 4442811 4443641

Neighbor

gene id symbol gene type direction distance location
LOC113545914 NA coding upstream 17267 4392506 ~ 4425544 (+)
LOC113545870 kdm6a,LOC108272609,LOC108436446,LOC107750839,LOC107564831,LOC107703100,LOC106528445,LOC102291812 coding upstream 198374 4135052 ~ 4244437 (+)
ddx3xb LOC108272611,LOC108412429,LOC107750829 coding upstream 314953 4112174 ~ 4127858 (+)
LOC113545970 usp9x,LOC108272755,LOC108412426 coding upstream 332488 4060891 ~ 4110323 (+)
dzip1 NA coding upstream 437476 3969785 ~ 4005335 (+)
igfbp5a LOC108273291 coding downstream 123093 4566734 ~ 4587196 (+)
stk11ip stk11ip,LOC107663072 coding downstream 207365 4651006 ~ 4692028 (+)
LOC113545978 NA coding downstream 216368 4660009 ~ 4660123 (+)
LOC113545806 NA coding downstream 264946 4708587 ~ 4717273 (+)
wbp4 wbp4 coding downstream 679079 5122720 ~ 5127596 (+)
LOC113545955 NA non-coding upstream 8075 4429407 ~ 4434736 (+)
G21475 NA non-coding upstream 101471 4341127 ~ 4341340 (+)
G21469 NA non-coding upstream 106175 4336254 ~ 4336636 (+)
G21297 NA non-coding upstream 237848 4202556 ~ 4204963 (+)
G21293 NA non-coding upstream 286491 4156000 ~ 4156320 (+)
G21514 NA non-coding downstream 13631 4457272 ~ 4457846 (+)
G21577 NA non-coding downstream 82282 4525923 ~ 4526332 (+)
G21629 NA non-coding downstream 214573 4658214 ~ 4663379 (+)
G21763 NA non-coding downstream 364482 4808123 ~ 4808427 (+)
G21771 NA non-coding downstream 387262 4830903 ~ 4834058 (+)
trnah-gug_1 NA other upstream 91063 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 114951 4275073 ~ 4327860 (+)
LOC113545962 NA other upstream 700505 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 855168 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 864503 3550225 ~ 3578308 (+)
spega speg other downstream 310625 4754266 ~ 4759645 (+)
G21835 NA other downstream 644493 5088134 ~ 5088578 (+)
G21901 NA other downstream 764705 5208346 ~ 5208864 (+)
mych LOC108272607 other downstream 1050081 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 1058004 5501645 ~ 5503231 (+)

Expression


Co-expression Network