gad1b (gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324)


Basic Information

Item Value
gene id gad1b
gene name gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3297314 ~ 3337934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312320.1
TCTAGGCTCCTGTGCCATTTCACTGTCTGCACGCAGCACAAAGTGGATTTTGGGTGACTCatagacgtgtgtgtgcgtgggtgtgcgTGTCTATGCGTGTGTATGCGCGCGCGGAAAGGATAAATTGAGTCGATTCACGCgttggggggaaaaagagagagagagagagatttaatcCAGAAGAGGCTTGAACCGGGGTTTGTTCAGTCTGGTGCTCCTTGGGAGATTTTCACCTGTTTATAAGGCgatataaagaagaaaatacACCCCACATACAcccgcgcgcgcgcacacacactctctctcacacacacactcacacacactctatctctcttttgGGTTGTCTGGATTGTTGCCTACAGAGCTGGAGCGGAAGTCTGTGAAACACACCTGTAAACGcagTGTGAAAAGCTTGGAAGTGTgaaactgatgatgatgatggcggcTTCggcttcatcctcctcctcttcctcagtcGCCGAAGTGGATCAGAGCTCTGCTAATCTGCGACCTCCAGCCTCGgCGTGTGATGGCTGGTACGGCGTCGCGCACGGCTGCACCCGCAAACTGGGCATGAAGATCTGCGGGTTTCTGCAGAAGAACAACAGCTTGGAGGAGAAAAGCAGGATGATGGGATCCTTCCGAGAGAAAGAGCAGAGTCATAACAGGGAGAACCGGGAGAAGGAAACGCGCTTCACCCGCAACGAGACTGACTTCTCCAACCTCTTTGCCCGGGATTTACTTCCTGCTAAAAATGGCGAAGAGCCGACTATGCAGTTCCTCCTCGAGATCGTGGAGATCCTCACCAATTACGTTCGCAAGACTTTCGACAGATCCACCAAAGTTCTGGACTTCCACCACCCACACCAGCTCCTGGAGGGCATCGAGGGCTTCAACCTGGAGCTCTGCGACCAGCCCGAGTCGCTGGAGCAGATCCTCGTGGACTGCAGGGACACGCTCAAGTACGGAGTCCGCACAGGTCACCCAAGATTTTTCAATCAGCTCTCTACAGGTCTGGACATCATCGGCCTGGCTGGAGAATGGTTAACCTCTACTGCTAACACCAACATGTTCACCTACGAGATTGCACCTGTGTTTGTGCTGATGGAGCAACTGACGCTGAAGAAGATGAGGGAGATTATCGGCTGGCCGAACGGAGAAGGAGACGGACTTTTCTCACCGGGTGGTGCCATATCGAACATGTACAGTGTGATGATCGCCCGCTATAAGTATTTCCCCGAGGTCAAAACCAAAGGCATGTCGGCTGCACCGCGCCTCGTTCTCTTTACATCAGAACATAGTCACTATTCGATCGCTAAAGCTGGAGCAGCTCTGGGTTTCGGTAAAGAAAACGTCATCCTGCTCAGCACCGACCAAAGGGGTCGAGTCATACCTGCAGACCTGGAGGCTAAAATCATCAGCGCCAAACAGAAGgGTTATGTTCCACTCTTTGTGAACGCAACAGCCGGTACTACAGTATACGGAGCGTTCGACCCCATCAACGACATCGCAGACATCTGCGAGAAATACAACATGTGGCTCCATGTGGACgGTGCGTGGGGTGGCAGTCTGCTGATGTCGAGGAAGCATCGTTACAAGCTGAACGGTGTCGAGAGAGCGAACTCGGTCACGTGGAACCCACACAAGATGATGGGAGTGCCACTGCAGTGCTCGGCCATCCTGGTCAGAGAGAAgGGAATTCTGCAGGGCTGTAACTCCATGTGTGCCGGTTACCTGTTCCAGCCTGATAAACAGTACGATGTGACGTATGATACGGGCGATAAAGCCATCCAGTGTGGCAGACACGTCGACATCTTCAAGTTCTGGCTCATGTGGAAAGCCAAGGGCACAGTCGGGTTTGAGCAGCATGTGGACCGGTGTCTTGAGCTCTCTGAGTATCTCTACAACAAAATCAAGAATCGCGAGGGTTACCAAATGGTCTTCCAAGgagagCCCCAGCACACTAACGTGTGTTTCTGGTACGTTCCACCGAGTATGAGGAACATGCCggatggagaggagagaagggAACGACTGCACAAGGTGGCGCCGAAGATCAAAGCGATGATGATGGAGTGCGGCTCCACCATGGTGGGCTACCAGCCGCAGGGAGACAAAGTCAACTTCTTCCGTATGGTCATCTCCAATCACGCTGCCACCAAGTCAGACATCGACTTCCTCATCGAGGAGATCGAGAGACTCGGACAAGACCTGTGATAGAGCCGTACATCTTTGCGCCATCTTCTGGAGGAACGCCGGTACTGCAGCCCTGTTCAACAGCCGGTGACTGTAAACCTGTGCTGTGTCCctgtttaacagtttaaatgtagttttaaaGTGCACTATATCCTGTCAAACTCTTAGAAGTGTCTAGTAGCAGTGAGATATTTAGATCTAgtctgcattaacacacacaaatctgaaaACACTTTATTACTTTTGGCCACACTTTCCCTAATAGAGAACACAGGGGTAGTACCAGAAGGTAATATTGCCACctaacagctccagggttcaatcctgagctcagtttCTCAGGGGAGCATGTTCTCTTCAAGTTCTCCTGAgttttcctccaggttctaCAGTTTCCTCGCAACTggtatgcaaaaaaataataataaatgcccCTTGGTGAGAACGAATGTATGGTCTCCTGAGATCCCTggtattcccgggataggctctggatctgccgcgacactgaccaggataaagcacttactgaaggtgaatgaatacAGAACCTCCATCTTGGAATTGCGGCGATCACATGACAATCATATATCAGTGCTTTCAAATGGCTCATCAACCCAAAAAGGCATTTTGATGAATCATGTATTTCCGAGTCAGCAATGCATGAATACTTTGACCCAGGAGGTATTCCCATTCTCCCAAATTCTCCTACGTTCCAGGTTTAGTCAGTGAAATCTGGGTCTTCTGAAAGCTCCTGAACTTCCAACTTGGCAATGCATGAATGCTTTGAAATTGGAAGAACAGAAAAGTTTTCCCATTTTTACAAATTCTCCTATATTATGGGTTTAGTTTGTGAAATATGGGTTGTCCAAAAGCCTCTAAATGTCCTGTTTAGAAGTTTACATGAACACACTCATATCTCACCAAATAAACCAACTGGCTTCATCTATTTTGATGGATTTCGGTTgtcaaaaaaagtgttttaaagtgGATGGAAAGgcaaagaaatatgaaaagaCGTGTTTTCAAATTTGCACCTGTTAGTGTGGACTAGACCTTAGGGATTTATGATGATTGGAGAAACAGCaggattattaatattactagaCAATTCAAACCTACACATACAAATCAGTGCttatataataatactaatagtaataatatggCATGAGTGTGTATGACAGAATGTCCCCCCTCACACCGTCCTCAAAACCCATGGCGCTTTGTTTTCATCACATTTCCatccatatatacagtatatgtatattaatattaagtatATATTATGTGTAATGGGACGTTTACAGTGCTTCAGGttgtaaatatataacaaagACGAGCAAGGCGCACCACCCTTTTAACCAAGTCTGATCTTCTTCCTGTGTATACGTGTGCAACGTGCCGTCTGTGGTCGTGTTTCTAGAACTTACCTTGTTGTAGGTCAGTGAGGACGAATCAGCCCTGTTCCTGGAGATCTAAACTCCCACACGCTAATTCATCAGGACAGGAACTGAGGCGTGAGACTGTAAATCTCCAGGAGCAGGGCTGATCATCACTGCTGTAGATCTTGTGTTTAACGAGCACCTTTGTGAGGTGAAAACGTGTCTTCAGTTTCCAGCAGAAATGCTTTACGACAATAACGACGCGTTCAGATGGTTCAAGTcgtgagaacactgttgctaggcaaccggGAAATATAGACACTGAGCATAAAGCTGAATTAGGATATATGGGAGTAATCATAATTACAGTCTTCCAGTCGGAAGTTTACTTGTAGCCAGTTAGCTCACTTCCGGGTTTGATTAGTGAAATCTGGGCTGTCAGAAAGCTCCAAAACTTCCAACTCAGCAATGCATGAATGCTTTGAAATTGGAATAACGAAAGGTTTTCCCATTATCCTGAATTCTGCTACATTCAAGCTTTGGTCTGCAAAATCTGGACTGTCAGAAAGATCTTGCCCTTCTGACTGGGCAATGCATGAACACTTTGTAATTGGAATAACAGGACATTTTCCCATTGTCCTGAATTCTCAAAATTCCAGGTTTGGTTAATAAAATCTGGGCTTTCAGAAAGCTCTTGAACTTCTGACTTGCCAATGCATGAATGCTTTGAAATTGGAATAATGGGAAAGTTTACCATTCTCCTGAATCCTCAAACTTCCAGGTCTGGTTAACAAAATCTGGGCTCTCAGAAAGCTCTTGAACTTCAGGCTCTGCAATGTATCAATGCTTTGAAATTGGAATAATGGGAactttttcccattttccccaaaatttcAGGTTTGGTTATTGAAATGTTGGCCTTCAGAAAGCTCCAAAACTTCCGACTTGCCAATGCATGAATGCTTTGAAATTGGAATAATGGGAAAGTTTACCATTCTCCCAAATTATCCAATATTCCAGGTTTAGTTTGCAAAATCAGGGCTCTCAGAAAGCTCTTGAACTTCAAACCCTGCAATGTATCAATGCTTTGAAATTGGAATAATGGAAACGTTTTCCCATTTTCCCAAAAAATTTAGGTTTGGTTAGTGAAATGTGGGCCTTCAGAAAGCTCCTAAAATTCCAACTCGGCAATGCATGAACGCTTTGAAATTGGAATATCGGGAAGTTTTCCTGTTCTCCCAAATTCTCAAAGTTTTTGGTTTGGTTAGCAAAATCTGGGATGTCAGAAAGCTCCAAAACTTCTGACTTGCCAGTGCATGAACGCTTTGAAATTGGAATAACGGGAAGTTTTCGGTTTGGTTCGCAAAATCTGGGATGTCAGTAAGCTCTTAAACTTCCGAGTCAGACATTTACAAGAAGACATGTTCGTGTAGCCAGTTGACTCACATTCCAAATTTAAGGCCTGGATGCATTGCAGAGTCGGAATTTTAGGAGCTTTGCGACaacccagattttttttctggaagtGAGACAACTGGCTACAAGAACATTGGAAAATTTGGGCTAGATTTGAGTTACAATGGATAAACTCTTTTAATATTGttacaaactaaaaaaaaatgctaacaatACACAAATTAATGCGAGTCAATGTTATATGAAAAGTAGACAATTctttatgaataataatgtataagTGCTTTAAATGGGAATAACAGGAAGTTTCTCATTTGCCCAAACTCTTCTACATTCCTTCATAGAGGCTAACAGCTTAGCTAGCTTGtttgtagttaaaaaaaagtcgTTATATGGACAATATAAAGTCACAGTGATGATGGAAACAGAACAGAAGTGtcagaaatatcaacatttccctcagatatTTTGCAAAATGAATCAGAAAGTGTCTGTTTAACTGAGATTATGGTGGAATTCCACTTAGCATAACGCTCCGGTTGCTAACCAAACTTCCATGGGTTCTGCCATAGCCTATTCAAAAGCGTTAATATTCTGAAGTTAGAATCTTCTGGAAAACATGATGAACACACAACTCCATCTGAACGcagcaaatatataaatatatatacattatagcctttatttattttgtgactaggcatgtgctgatacTAAAGTTTCATTCCACAGTAAATGCTTAACATGTCTGTTTGTGCTAACTAGTACAGCTTGTcatagcttgctagctagctatttttgCTAAATAGTATACGCTATGCTGGTGATTTTTGGACATGGATAGTGGCTGGTTCATGCTAACAAGGGAAAGATTAGCGCTAGCTCACCACATAAcgattgctagctagctaacactttTAGCTTGAAATCATGAAATGGGCTTATAAGCGCGTCTGAGAGTAAAAACGTTAGTGccatagctagctaaatttgcTAAATCGCATGTTAACACTTATGCTAATATATATAGAGTAGTGATTTTTGGATAAAGCCAAATTGTTAGCTTAATGTTAGCTTCGTTACAGCTTGCTAGCTAACTCCCTTTattatcggcacatgcctaAATCGTGTTGGAACGTTTGCGATGGCGGTGGTTTAATTTGTTTGTAACGTATCGTTGTATCTAAATCATatttctgtatataaatatgtttatggtCCAGTCGTGAATTTGTGAGCCAAAGACCTTACACACTTTCTATTCTGTATTCCTTCAGATAAGCTGGTACTTatggtatatacagtatattttaaaaaaactatataaaaatatatacgatatatatttattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgttgttTGTTTAGGCCCTTGACCTCTTCAGTGcaatcagtgtgttgtgtatcaGTTTTAACGTCGCGTGTATCTTCGACTGAATGTTTTAAAGCAATGAATTAACGAGCAGCTTAATCTCtgccatattttttaaaaaaagcacaatttaGAAGAATCTGATGTTTAGGAAAACATAGGAAAATACAGATTGtggtaaataaatacaataatgtgtaatatattcaaaaaaattatttaaaaaaatgcagatccAGATGTAGACACCAGCGACGTCTTGGCTGATCGAATACATCTGGAGTAAAAGGGAGCATTCTgtaaatttgttgtttgtttgtttgtttgttttctgaattgttcctttaaatgtattataaaatatatatgataatatgaCGTTATTGTTGTATATAAAACTTGCATCCAGCAGTTGTGACACTTTGCACAATGTCGTTTTTCCTTCAGTctgtaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgtacgGATGTATGGAGGGAAACGCTCCTACTGAAGGACGGCACTTTGACCCGCAAACACGCCATGTGAACACTGTTACGCTCTCCTGTACAAATGCAATCTATTAGACGGTAGAAACTCTTGTTgtccttcctgtttgtttttaagctctatataaatatataaataaaaatatatatatataaaatattaaatctataatagAGTCAACAATAAATTGATCAGCTGTTACTGTA

Function

symbol description
gad1b Predicted to enable glutamate decarboxylase activity and pyridoxal phosphate binding activity. Acts upstream of or within gamma-aminobutyric acid biosynthetic process and neurotransmitter biosynthetic process. Is expressed in nervous system and neural tube. Used to study epilepsy. Human ortholog(s) of this gene implicated in anxiety disorder; bipolar disorder; developmental and epileptic encephalopathy 89; schizophrenia; and spastic quadriplegia. Orthologous to human GAD1 (glutamate decarboxylase 1).

NR:

description
PREDICTED: glutamate decarboxylase 1-like

GO:

id name namespace
GO:0042136 neurotransmitter biosynthetic process biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function

KEGG:

id description
K01580 E4.1.1.15, gadB, gadA, GAD; glutamate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312320.1 True 7153 mRNA 0.42 17 3297314 3337934

Neighbor

gene id symbol gene type direction distance location
erich2 LOC108271660 coding upstream 2802 3283888 ~ 3294512 (+)
ssb ssb coding upstream 55341 3233539 ~ 3241973 (+)
phospho2 phospho2 coding upstream 64586 3229722 ~ 3232728 (+)
LOC113545972 LOC108272174,LOC108271666,LOC108262055,LOC108271668 coding upstream 73140 3219340 ~ 3224174 (+)
LOC113545949 LOC108271656 coding upstream 115925 3168038 ~ 3181389 (+)
dync1i2b dync1i2b,LOC108271647,LOC107582325,LOC108438045,LOC107686754,LOC107557143 coding downstream 39580 3377514 ~ 3391569 (+)
sema5bb LOC108271639,LOC108430840 coding downstream 110216 3448150 ~ 3515083 (+)
LOC113545865 NA coding downstream 202875 3540809 ~ 3544535 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding downstream 251133 3589067 ~ 3613541 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding downstream 296162 3634096 ~ 3649254 (+)
LOC113545973 NA non-coding upstream 78603 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 86383 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 144800 3152314 ~ 3152514 (+)
G20807 NA non-coding upstream 345436 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 348468 2948610 ~ 2948846 (+)
LOC117599318 NA non-coding downstream 41957 3379891 ~ 3382596 (+)
G21136 NA non-coding downstream 311397 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 315817 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 328811 3666745 ~ 3666972 (+)
G21178 NA non-coding downstream 344047 3681981 ~ 3682254 (+)
LOC113545950 NA other upstream 103853 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 233287 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 306833 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 308439 2988803 ~ 2988875 (+)
trnaf-gaa_10 NA other upstream 310881 2986218 ~ 2986433 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other downstream 2512 3340446 ~ 3367287 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 212291 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 241814 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 390718 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 937139 4275073 ~ 4327860 (+)

Expression


Co-expression Network