kdm4aa (kdm4aa,kdm4a,LOC108412690)


Basic Information

Item Value
gene id kdm4aa
gene name kdm4aa,kdm4a,LOC108412690
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16589347 ~ 16622597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312398.1
CTTCTTCCATCTTTGTAAACAACTCTACAGTGCGCGTGCGCGTTCGTGTGTCACAATAATGGAGGACAATCTTTTCCAACCGTTGTGAACCCAAGCACCGTGTTCATTTGGAGAATTTGGACAAAGCGGCGTGCAGCTAAGTGTCGAAAACACGAGCAGAATGGCCTCAGACTCAGTAGCTCAGGCTCCTGGGTCGAGGATCATGACCTTCCACCCGACCAAGGAGGAATTCAAAGACTTCAACCGCTACATTGCTTATATGGAGTCAAAGGGTGCTCACTTAGCTGGCATGGCGAAGGTTGTGCCTCCTAAGGACTGGAAGCCCCGCCGCACATACGATGACATTGATGACCTGGTCATTCCTGCTCCTATTCAGCAAGTGGTGACAGGTCAGTCCGGGCTTTTCACACAGTACAACATCCAGAAGAAGCCCATGACTGTCCGCGAGTTCCGCAAGATCGCTAACACAGACAGGTTCTGCAACCCCCGGTACGTAGATTTGGATGAGCTGGAGAGGAAGTACTGGAAGAATCTTACGTTTAATCCTCCACTCTATGGAGCGGATGTCAACGGAACTCTCTACGATCCAGATGTAAACGAGTGGAACATCGGGCGTCTGAACACTGTTCTGGacacagtggagagagagagtggcatCAAGATTAAAGGGGTGAACACGCCGTATCTGTACTTCGGGATGTGGAAGAGCACGTTTGCCTGGCACACTGAGGACATGGATCTCTACAGTATCAACTATCTGCACTTTGGAGAACCCAAGTCCTGGTATGTTGTGCCTCCAGAACACGGGAAGCGATTAGAACGTCTCGCTAAAGGCTTTTTTCCTGGAAGTGCCCAAAGTTGTGAAGCCTTCTTGCGACACAAAATGACTTTGATTTCCCCATCAATTCTCAGAAAGTATGGCATCCCTCTTGAGAAGGTTGCACAGGAAGCAGGTCAGTTTATTGTGACCTTCCCTTACGCCTATCACGCTGGATTCAATCATGGATTCAACTGTGCAGAGTCCACAAACTTCGCCACTCAGCGCTGGATAGACTACGGCAAGCAGGCAGCGTTATGTTCGTGCCGTAAAGATATGGTGAAGATCTCCATGGACGTGTTTGTGCGAAAGTTCCAGCCAGAGCGATATAAACTGTGGAAGGCGGGAAAGGACAGCGTGATAATTGACCACTCCAAACCCACACCAGAAGCAGCAGAGTTCTTGCAGGATGGAAAGACACtaggagagaaaggagagctCAGCAACAGCAGCCCTGCTGAAAccagaggagagagggagactgAAACAGCAGATGAAGATGGAGGGgcgagagaaacagagaagggAGAGACGGTGTCAGACGAGACAGATACCATGAGAGGAGACAAAGTAATAGAAAATATAGGTGCacaacaaagaaagacagaagcaCAAGAGGCAAATGCAAAGGGAGAGGAAACAGAGACCAGAAAGACTCAACTAGAAGCTAGTGAAATAGACAAGACACAGACTGAAACAGAcaagacagagaaaacagaCATAGAGAAAGAAGCGactgaagaagaaggaagagagtCAGAGATGGAAATACCAGCACAAGAGGCAGGTGTGACAGATACAAACAAACCTGAAAGAGAAATAGGGGAAAtagagatggagacagaaaaTGACAGCACagagggaagagagaaagataagaCTGATGAGGGAAAAGAAGAGACAGTTACAGCAGAGATGGAgactgaagaaataaaacagccaaagactgaaagagagacagcaaggAGAGAGATGGAAACTGGAAAGGAAGAGCTGGACAGCAGTGAGATGAAGCAAGACATTGGTGAGACAGATAGTGGAGAGTTGGAGACTGAAAAAGAGAATCTGTCTGTGGCACAGGAGACAGACACATCAGTGACAGAGATGGAAACACAAAAGAATGGGATGGACAGtcaagagacagatagagaagaTAAGGAAAACGTAAAACAAGAGCGAGAGAtaggacagacagagatggcCAGTTCCCAGAGAGGGGACATGAAGACTGAGACAGTGTGTGGAAAGATggagagtgaaacagagagtggagtgatggagagtgagacaggagcgAGAGAGATAAGAATGGTGGAGTGCAAGACAGAGATTGGAGAGATGGAGTGCAAGACAGGGCGTGGCACTATGGAGAGGGAGACAGGGGAGACAGGGAGAGGAGAGATGGGGCACAACACAGAAAGTGGGttgatagagagtgagacagagagggaagaGCGGGAAAGAGAAACATGGAGTGGAAAGATGGAGAATGAGACAGGGGAGGCAGGGAGAGGAGAAATGGAGAGCGAAACAGGGTGTGGAGAGATGGAGGGTGAGGtaggagagacagggagagaaaagaTGGAGCGTGAGACAGGGTGTAGAGAGATGGAGAGTATGACAGGAGAGACTGggagaggagagatggagaaTGAGACAAGAGAGAAAGCCAGAGGGGAGATGGAGAGTGAAACAGGAGAGGAAGGCAGAGTAGAGATGGAGAGTGAAAcaggagagatggagagtgGACAgatggagagtgagacagtaGATAAAGGGAGAGAGCTGGAGGAaaaggacagacaggaggaggaagatggagAAAGCAAAGGGAAAAGTGGAAGAGAAGAACAGGGAAAGAAGACAatggagagtgagacagggagaggggAGATGGAGACCATAACAGGGAAAGAAGACATGGATAGTGAGACAGGGAGGGGGGAAACAGAGAGCATCACAATGAAGGAAGAAATGGAGAGTTGGACAGGGAGAGGGGAAACAGAGAGCATAACATTGAAGGAAGAAATGGAGAGTGACACAGGGAGAGGGGAAGTAGTGTCAAAAAACCctgatgaagaaagaaaagtagaaATTGCCAAGACTGTAAAACAAGAGACTGTTTCAGCAAATCTGGAGGAGAAAgtagaagagaaagagagagagattatggaGACAGGAGGGGAGAAagtggagacagagacagaagaagagacaAAGACAAGCAGTTCTTCTGTTCGGAGGAGGAGAAGCAGTGCCAAGCCGAAGGTGAGGATGAAACGGCAGAGAGGAGCTAGTGCTGGTTCTGCTGAGGCTGTAGAGCAGCTCAAGCAGAAGAGAACCAGGCTCAGTCAACCTGAAGCAAAGCGTGAGGCAAAACAGCCAGGTTCAACAGGCCAAGATGAGAGTGAAAATGAGGACCGCATGGAAGTAGGGGCTCCAGcattaaaacaggaaaagaagCCAGACCACTCCCACTTGGAGAGTCCTCCTCCTCACTTTCCAGCAAATAAACAGCCAATCGCCAACACTCCTAAAACGCATAACCGAAGCCATAGCACTTCTCTGTCCTGCCATATCACTGCGTCTTCCCAGCCTCGCAACATCACCACTCGGCCCAAAGAAACCGCTCCATGCTGTGATCTTAGAACTAAGCGCCCTCAGCCTAACAACACCACCTCCCCATCTCGGCGTGCGGTTATCACCAAACCCAACAAATCCACCATTAAATCTCCATCTAGCGACATCTCGACAGACCCGAGTGACCTCAGCATTCAGGCTAAACCCACCAACAACTCGAGACACCGTGGCGATATCACACCAAAACGCAGGAAAACCAGCCCTAAACATGAAGCCAAACCCAGGGAGAGCCGTGGCAGCTCTGTTCCAAACGATGACAGTGATGAGATTAAGGCTGCCTACGGAGGGAGCTCGGCTCAGCGGCTTTTCCAACGGACACTCAGTTCTGCTGAGGTGCTACACGTTCACAGCTACGCTAAAGGAGACTACAGCGATCTGGACAGAGAGCAAAGGGACAGCGACACAGACACGGAGACGCAGGAGAATGGACAGcagggggcagaagATGGCTCTTATGAGGCACTGAACAGTCTAGTGAGGCTGCCCAGACATCATCCGCTAATAAAGGACAGCATCAGTGACGAGGagcttCAGGACCAGGCTTTAATTGAGGAGGATGGTTTAGAGGGTGAGCTGTGGGCTAAACCTCTGGCTCAACTGTGGCAGAACAGACCTTAcaatgaacagagagagagagagtacaacAGAGAGATGGGCCTCCAGCCACCATACTGCGCCGTCTGTATGATTTTCCAGACGCACCAGCGGTCTGAAGGGACCGACTGTGAGCAGATTGTTGTACAATCTGGATGTCAAATGAGGACAAAGCCACTGATCCCCGAGATGTGTTTCAGCACAACTACTGAAGAGTGCACTGAACTTCATCTGTCCACTCCTCACTTGGATCAGGACGGAACCAGCCTGCTCATCAGCTGCTCCCAgtgctgtgtgcgtgtgcacgcCAGTTGCTATGGCGTTTCCCCTGAGAGAGTCACAAAAGACTGGAAATGTGCCCGTTGCAAAGCCAACGCCCTCACGGAGAGTTGTTGTCTGTGCTCATTAAGAGGTGGAGCCTTACACAGAGCCAACAATGACAAGTGGGTGCATGTGCTGTGTGCGGTGGCAGTGTTAGAGGCTCGCTTCGTGAACATCACAGAGAGATCTCCAGTGGATCTCAGTGGCATTCCCTTACAGAGATTTAAGCTGaaatgttacTACTGTAAGAGGCGGATGAAGAAGACGACAGGCTGCTGTGTGCAGTGTTCTCATGGCCGCTGCCCCACGTCATACCACCCTACCTGTGCCCAGGCTGCGGGTGTCCTTATGCACCCGGATGACTGGCCTTTCATCGTCTATGTCACCTGCTGCCGTCACAAAGGCCCTGTCCAATCAGAGAGGAAAAAGGAGGCCATGAGGGAAATCGGCGCAGGCCAGAGAGTGATCTGCAAGCACAAAAACGGACGCTACTACCAGTGTGATGTGGTTCAGCTGACAAAAGAGACATTTTATGAGGTCAACTTTGATGATGGCTCCTTCAGTGACAACCTCTTTCCTGAGGACATTGTGagccgTGACTGTGCCCAGCTGGGTCCTCCACCCATGGGAGAGGTGGTGCAAGTGCGTTGGACAGACGGACTCATCTACGGAGCCAAGTTTGTTGCAGCACACGTCATTCAAATGTACCAAGTGGAGTTTGAAGATGGCTCACAGCTCACAGCCAAGAGAGATGATGTCTACACATTAGACGAAGAACTGCCCAAAAGGGTGAAATCCAGACTGTCAAAGGCATCAGACATGCGTTTCGATGGCATCTTTGGAGAGAAGAAGCTGCAGGACAGCAAGAGGCAGCGGGTGATTAACTCAAGATACAGAGGCGACTACATCGAGCCGGTCATCTACCGAACCATCATGGAGTAACCagcatcatcttcttcttcctcctcacaGCACCAGCATTGATTGAGCAAAGCTcccacacacacgtctcacaACATGAAGTGAGAatgtttctttctgtgtgtgacATTGTATACATCTGCTTTTTTAACAAGTTTTAATCGCTCCAGGAGCTTTGCCATCACTCTGATCTCTGAAAAGCTTTTAGTGaaggcatttttaaaatacacacacacacacacacacacacacacacacacacaaaaaaccacACATGCCTGTGCCACATCCTTTCAGACATGATGTGGTTTTTATATCCTTACTGGAATTTGAGCCACTTATGCATACACTTTGGCCAGAAAGCATTAGAGTTTGTACTAGTTTTATACAGATCCTCATTGTTTTGTCCTGTTGTTAAGTTTGCATTAATTTATTTCCCTCCGAGTTCAGGGTGCTAATATTTGCCCATATATTTTTATCGAACGGAGGAAACATTGCCATTTTATCAACATGAACAcctcctttttttaatccacactGTTGTCAAATTGTACAGCTGCATTCCTGAATATGTAGATTATTTGCAACATAATGAatttagatttgttttgttcttcttgttttcgtttttttttttttttttaaccagtctATTTATTAGATGGTGCTTTCTGAAAGTAGCCTTTGCAATATAACTGTCTGAGTTCTAACAGCGCTGGACATATGATGTAGTTTTTGTTTCCAGCTGGGAGGTTCTTTCAAAATGCCACGGATTTCTTTCCTGTTCCTCTTTCAGATCTGCTATATGACGCATTTAAAGATCTGCTTTGCACTGCTGTTCAATCAGGCGtgttttatgttaattatgtgCAGCTTTGGCAATCTTAATCATAACCCTGTTAGGCATAAGCAGATACTAAGGTTCACATATCATGCTAAATCTCTAGCCTTCATCACCACACACAATATTGTTGTgatattttgcattaaaaaatacaggTGTTTTTGTTGGCTGACATTTTAACTGTTATGGAAGCCCTGGCAGTCCCCTTGCTAAACTATTCAACCTTGTCCTGTTTGCTGAAATCAACCTTACGTACACTACCTGAATCGCACATGCTATTGGCATGTATTGcgccatatttttttttaatcattaaaaaaattgggTAACTAAAACTAGCTAGATAGCTTGTGTTATTTTTGCTATCCATAAAAGCTTTTTCATAGCACACTAGCTTGTCATTGGggcatctaaaaaaaaatagtgcattaAATATGCTGGCATTAACAAGATGCTATTATTGTAATAGAAAAAGCTTACATAAATAGCCTAGTTAACAAAATGAACGTTTGAACAGgatcctcaagggttcttttgTAAGGACGGCGTCAGGGGGActgtgagcgacagttctgtccGTGCTCCAATGAACAGAATTGTGGGATTCCCTTCTCTAAGGCCACATGCAGTGCAGTCTTTGGATTAATCAGCTAATCAAAATAAGCAAGACAGCTGTCTTTATGCTGACCTTATTTTGATTATCTAAATGGGACAGAATTCATTCTGAGAGCACAAATGCTGCCCAGCCAATACTGCCTACTCAGGCAGCTTCTTCACAAATGGaaggcaaataataataataataataatctgaattGTCCACTATGATAATAGGGTGCCTGTTTAGTATCGtgatatattgtataataataaagccTGTCAGAACATGCCTAATCCCCACGCTTTAAAAAAGCTAGTTTTGCACTTCTAGGCTGTACTTTTAATAAACTGATTCCTCTAGCCAAGTTTCCGAAACAGCCACTCACTCATGAAGGCCTTTTAAAGCCTGTGatatgatgtgtagtgtgtgtccaTAGTTAACAGCTGTCAGATATTTAAGTCCCTTTCACTCAGCAGGAAGGGACCTACATATATTACCACTTTAAAAAATGACttattacaaatgttttttattattaagaagcctattttattgctttgttttataataaGTGTTCAATGTTTATATGCTGTGAGAAATAGAGTTGTATGTAGTTAATTTAAGGACTTCATGAACTGGCAGTGTATTTTCCCAGCTTGCTTCCTTAAGCTTAAGCCTCAGTCACACTGAAAACCGAGGCACTGAGATGTCTGTTCTTGTCTTTTGTAAAGattatcagtgtgtgtcagtaaaaTGATGTGGGCTTACA

Function

symbol description
kdm4aa Predicted to enable histone demethylase activity (H3-K36 specific) and histone demethylase activity (H3-K9 specific). Predicted to be involved in chromatin remodeling. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Orthologous to human KDM4A (lysine demethylase 4A).
kdm4a Enables several functions, including histone demethylase activity; ubiquitin protein ligase binding activity; and zinc ion binding activity. Involved in histone lysine demethylation; negative regulation of cellular metabolic process; and negative regulation of gene expression. Located in cytosol; fibrillar center; and nucleoplasm. Biomarker of several diseases, including alopecia areata; lung cancer; prostate cancer; stomach carcinoma; and urinary bladder cancer.

NR:

description
PREDICTED: lysine-specific demethylase 4A

GO: NA

KEGG:

id description
K06709 KDM4, JMJD2, JHDM3; [histone H3]-trimethyl-L-lysine9/36 demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312398.1 True 7507 mRNA 0.46 23 16589347 16622597

Neighbor

gene id symbol gene type direction distance location
st3gal3a st3gal3,LOC108412691 coding downstream 3101 16534768 ~ 16586246 (-)
LOC113523777 artn coding downstream 70189 16491681 ~ 16519158 (-)
rad54l rad54l coding downstream 100418 16476425 ~ 16488929 (-)
LOC113531657 LOC108272136 coding downstream 134781 16436840 ~ 16454566 (-)
prkcda LOC108271968,LOC108440644,LOC107582675,LOC103030273,LOC107667398,LOC107721176,LOC107673500,LOC107712078 coding downstream 159251 16419260 ~ 16430096 (-)
ptprfa ptprf,ptprfa,LOC107709086 coding upstream 3057 16625654 ~ 16832868 (-)
szt2 szt2 coding upstream 443758 17066355 ~ 17169352 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding upstream 564048 17186645 ~ 17191459 (-)
LOC113536221 NA coding upstream 575392 17197989 ~ 17203249 (-)
pbx1b pbx1,pbx1b,LOC108272157,LOC103479586 coding upstream 597987 17220584 ~ 17294005 (-)
G28779 NA non-coding downstream 17823 16570790 ~ 16571524 (-)
G28537 NA non-coding downstream 99432 16462102 ~ 16489915 (-)
G28508 NA non-coding downstream 229826 16358139 ~ 16359521 (-)
G28515 NA non-coding downstream 259926 16329108 ~ 16329421 (-)
G28385 NA non-coding downstream 322592 16266556 ~ 16266755 (-)
G29119 NA non-coding upstream 431491 17054088 ~ 17054656 (-)
G29167 LOC108272186 non-coding upstream 770861 17393458 ~ 17394467 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding upstream 772169 17394766 ~ 17396199 (-)
LOC113528975 NA non-coding upstream 801274 17423871 ~ 17429778 (-)
G29174 NA non-coding upstream 810856 17433453 ~ 17434168 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 453632 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 1094138 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 1128346 15456635 ~ 15461001 (-)
G27843 NA other downstream 1290328 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1713357 14872948 ~ 14875990 (-)
G29158 NA other upstream 650358 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 849733 17472330 ~ 17529315 (-)
G29263 NA other upstream 1326560 17949157 ~ 17949718 (-)
G29279 NA other upstream 1448390 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1525631 18148228 ~ 18195628 (-)

Expression


Co-expression Network