rad18 (rad18)


Basic Information

Item Value
gene id rad18
gene name rad18
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15505644 ~ 15568428 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314042.1
CGGAAATGACGTCAGTGCAGGACGTGAAAAAGTGCGCGGGGAAATTTCTATACCTGTTTCAGTAACAGTGTTAGCTGAGTGCATATCGCGTATTTTAATAAACCCAGTTAGAAAATTGGGAAAAATGTCTCATTCAGTCGAAGCGGATTTACCACCGCACTTGTCATGCTTGAAAaataTTGACACTTTGCTCCGATGCCCGATTTGCTTCGACTTCTTGAATATATCCATGATGACGCAGTGTTCTCATAACTTTTGCTCCCTATGTATACGGAAATTTCTTTCCTACAAGTTGCTGTGTCCTCTTTGTAACACGCCACTCACAGAACAAGAGCTGAGGAACAACAGACTACTGGATGACCTTGTTCAGAGCTTCCAAGCTGCGAGGCAACAGCTGTCTCAGACTAATTTTGAGTCACCTCCGATCTCCCCCAAGACCCCGACAATGGCTGTCGGAGGAAAAGCAGCGAGGCAGAAAGCCCTTAAAAAAGAGGGCACTATTCTGACTCACTTCTTCCAGAAACGAGCCCCAATCAACTCCTCCATAGGAGCACAGTCTGGCTCTAAGGGTCTGCACCCAGTGAAACAGGAGCccatggatgtgtgtgtgcagggagcCCTCCTGCCAGAGAGTGCAGTGACTGTGACCACAGTAGTGAAAGAAGAGAAGCTGGACATGCCTGCTTTTCCCTCCACATCGCAGGATATTAAACCTGTGGCCAAAGtggagtgtcCAGTGTGTGGAGTGGAAGTGTCCCAGCAACATATTAATAAACATCTGGATACATGTCTGACCAGAGGGGAGAAGAAGGATAGCCTTAGAAGGTCTGACCAGCTAGGCTTTTCCTGTTCTGCATTTATAGACCCCAACTCTCGGAAGCGCAGGCCTATGGCTAAGCTGGTGTACACCCTGCTGACAATGGTGGAGCTAAAGAGAAGACTGAGAGAGTGCCATCTGTCCACACAAGGCTCCAGAGAGCAGCTCATCCGACGGCACCAGGAGTTCATACACATCTACAACGCACAGTGTGATGCACTCAACCCCAGATCAAGTGAGGACATTGCTAGAGAGGTTGAAAACAATGAGAAGATGAGGAATCAGCTGGAGAGTAAAAATAAACCTGCAATACTCATCACTAAAAACCACACAGTCACTGAAATTGAACAGTTGCACTCAGATTACCGGAAACAGCACAGTGGTGAGTTTTCCCGTTTAATTGCTCAGGTCAGAGGTCGTTTGGAAAATTCCAGGAGAACACAAATTAAGCAGGAAGGAGGGAAATCAGCAGAGGAATTGTGTTGCAGTGCTGATGACACAGTAGTCCAAAACACACCCCAGCCCCCAGGTTCTTTGACATTGGAAATTGCCACCAATGAGAAGACTTCTGTTATGGAACTTGGGTCGAGGTCACCAAGCCCTACTCTCAGTGAAGTGTCTGTCAGCAGaaagcacagagccagagagagtgctacagaaaaaaggaaaatatgatCTCTTCATCTCGGTGCTGATCTGAAACATTTTGACAGGGATGTGGatgaattaaaaacatgaaatatgtcCAGTATGTCACCAGAAGTGCAATATGCAGAGCAAAGACATGGGAGATCTATGCTTTGGTAGACTGTAGATTAGAGCCTGAGGAAGGAGattgtgttgtattttagtCAGTGACAATAGTGTTATAAGATTGTTTACAGTGGATTGTATtccagtttttctctctctccctctctctccccccacaTATATT
>XM_034314047.1
CGGAAATGACGTCAGTGCAGGACGTGAAAAAGTGCGCGGGGAAATTTCTATACCTGTTTCAGTAACAGTGTTAGCTGAGTGCATATCGCGTATTTTAATAAACCCAGTTAGAAAATTGGGAAAAATGTCTCATTCAGTCGAAGCGGATTTACCACCGCACTTGTCATGCTTGAAAaataTTGACACTTTGCTCCGATGCCCGATTTGCTTCGACTTCTTGAATATATCCATGATGACGCAGTGTTCTCATAACTTTTGCTCCCTATGTATACGGAAATTTCTTTCCTACAAGTTGCTGTGTCCTCTTTGTAACACGCCACTCACAGAACAAGAGCTGAGGAACAACAGACTACTGGATGACCTTGTTCAGAGCTTCCAAGCTGCGAGGCAACAGCTGTCTCAGACTAATTTTGAGTCACCTCCGATCTCCCCCAAGACCCCGACAATGGCTGTCGGAGGAAAAGCAGCGAGGCAGAAAGCCCTTAAAAAAGAGGGCACTATTCTGACTCACTTCTTCCAGAAACGAGCCCCAATCAACTCCTCCATAGGAGCACAGTCTGGCTCTAAGGGTCTGCACCCAGTGAAACAGGAGCccatggatgtgtgtgtgcagggagcCCTCCTGCCAGAGAGTGCAGTGACTGTGACCACAGTAGTGAAAGAAGAGAAGCTGGACATGCCTGCTTTTCCCTCCACATCGCAGGATATTAAACCTGTGGCCAAAGtggagtgtcCAGTGTGTGGAGTGGAAGTGTCCCAGCAACATATTAATAAACATCTGGATACATGTCTGACCAGAGGGGAGAAGAAGGATAGCCTTAGAAGGTCTGACCAGCTAGGCTTTTCCTGTTCTGCATTTATAGACCCCAACTCTCGGAAGCGCAGGCCTATGGCTAAGCTGGTGTACACCCTGCTGACAATGGTGGAGCTAAAGAGAAGACTGAGAGAGTGCCATCTGTCCACACAAGGCTCCAGAGAGCAGCTCATCCGACGGCACCAGGAGTTCATACACATCTACAACGCACAGTGTGATGCACTCAACCCCAGATCAAGTGAGGACATTGCTAGAGAGGTTGAAAACAATGAGAAGATGAGGAATCAGCTGGAGAGTAAAAATAAACCTGCAATACTCATCACTAAAAACCACACAGTCACTGAAATTGAACAGTTGCACTCAGATTACCGGAAACAGCACAGTGGTGAGTTTTCCCGTTTAATTGCTCAGGTCAGAGGTCGTTTGGAAAATTCCAGGAGAACACAAATTAAGCAGGAAGGAGGGAAATCAGCAGAGGAATTGTGTTGCAGTGCTGATGACACAGTAGTCCAAAACACACCCCAGCCCCCAGGTTCTTTGACATTGGAAATTGCCACCAATGAGAAGACTTCTGTTATGGAACTTGGGTCGAGGTCACCAAGCCCTACTCTCAGTGAAGTGTCTGTCAGCAGAGTCCCAGAGAGTGGTCCAAGAGGCTAACGCAGAGCCGCAGGCTCCTGGGAGTTGAATCCTCTTATTGTGGGAGGAAAATGCACTCATGGCTAGAAAGAACCGGAGTGACACCTGGACACAATTTAAAATTAACACtgaatagactttttttttataactttacACACGATTCTCTGTTTTCAGTACAGGATTTGTACATAGATTTTGAacaataaaatctatttttaaaaaatg
>XM_034314051.1
CGGAAATGACGTCAGTGCAGGACGTGAAAAAGTGCGCGGGGAAATTTCTATACCTGTTTCAGTAACAGTGTTAGCTGAGTGCATATCGCGTATTTTAATAAACCCAGTTAGAAAATTGGGAAAAATGTCTCATTCAGTCGAAGCGGATTTACCACCGCACTTGTCATGCTTGAAAaataTTGACACTTTGCTCCGATGCCCGATTTGCTTCGACTTCTTGAATATATCCATGATGACGCAGTGTTCTCATAACTTTTGCTCCCTATGTATACGGAAATTTCTTTCCTACAAGTTGCTGTGTCCTCTTTGTAACACGCCACTCACAGAACAAGAGCTGAGGAACAACAGACTACTGGATGACCTTGTTCAGAGCTTCCAAGCTGCGAGGCAACAGCTGTCTCAGACTAATTTTGAGTCACCTCCGATCTCCCCCAAGACCCCGACAATGGCTGTCGGAGGAAAAGCAGCGAGGCAGAAAGCCCTTAAAAAAGAGGGCACTATTCTGACTCACTTCTTCCAGAAACGAGCCCCAATCAACTCCTCCATAGGAGCACAGTCTGGCTCTAAGGGTCTGCACCCAGTGAAACAGGAGCccatggatgtgtgtgtgcagggagcCCTCCTGCCAGAGAGTGCAGTGACTGTGACCACAGTAGTGAAAGAAGAGAAGCTGGACATGCCTGCTTTTCCCTCCACATCGCAGGATATTAAACCTGTGGCCAAAGtggagtgtcCAGTGTGTGGAGTGGAAGTGTCCCAGCAACATATTAATAAACATCTGGATACATGTCTGACCAGAGGGGAGAAGAAGGATAGCCTTAGAAGGTCTGACCAGCTAGGCTTTTCCTGTTCTGCATTTATAGACCCCAACTCTCGGAAGCGCAGGCCTATGGCTAAGCTGGTGTACACCCTGCTGACAATGGTGGAGCTAAAGAGAAGACTGAGAGAGTGCCATCTGTCCACACAAGGCTCCAGAGAGCAGCTCATCCGACGGCACCAGGAGTTCATACACATCTACAACGCACAGTGTGATGCACTCAACCCCAGATCAAGTGAGGACATTGCTAGAGAGGTTGAAAACAATGAGAAGATGAGGAATCAGCTGGAGAGTAAAAATAAACCTGCAATACTCATCACTAAAAACCACACAGTCACTGAAATTGAACAGTTGCACTCAGATTACCGGAAACAGCACAGTGGTGAGTTTTCCCGTTTAATTGCTCAGGTCAGAGGTCGTTTGGAAAATTCCAGGAGAACACAAATTAAGCAGGAAGGAGGGAAATCAGCAGAGGAATTGTGTTGCAGTGCTGATGACACAGTAGTCCAAAACACACCCCAGCCCCCAGGTTCTTTGACATTGGAAATTGCCACCAATGAGAAGACTTCTGTTATGGAACTTGGGTCGAGGTCACCAAGCCCTACTCTCAGTGAAGTGTCTGTCAGCAGCTCCATTTCTGATGTTTTCAGTTGAAGACCAGAAGGAAGCTACCTGTAGTCCCAGAGAGTGGTCCAAGAGGCTAACGCAGAGCCGCAGGCTCCTGGGAGTTGAATCCTCTTATTGTGGGAGGAAAATGCACTCATGGCTAGAAAGAACCGGAGTGACACCTGGACACAATTTAAAATTAACACtgaatagactttttttttataactttacACACGATTCTCTGTTTTCAGTACAGGATTTGTACATAGATTTTGAacaataaaatctatttttaaaaaatg
>XM_034314053.1
CGGAAATGACGTCAGTGCAGGACGTGAAAAAGTGCGCGGGGAAATTTCTATACCTGTTTCAGTAACAGTGTTAGCTGAGTGCATATCGCGTATTTTAATAAACCCAGTTAGAAAATTGGGAAAAATGTCTCATTCAGTCGAAGCGGATTTACCACCGCACTTGTCATGCTTGAAAaataTTGACACTTTGCTCCGATGCCCGATTTGCTTCGACTTCTTGAATATATCCATGATGACGCAGTGTTCTCATAACTTTTGCTCCCTATGTATACGGAAATTTCTTTCCTACAAGTTGCTGTGTCCTCTTTGTAACACGCCACTCACAGAACAAGAGCTGAGGAACAACAGACTACTGGATGACCTTGTTCAGAGCTTCCAAGCTGCGAGGCAACAGCTGTCTCAGACTAATTTTGAGTCACCTCCGATCTCCCCCAAGACCCCGACAATGGCTGTCGGAGGAAAAGCAGCGAGGCAGAAAGCCCTTAAAAAAGAGGGCACTATTCTGACTCACTTCTTCCAGAAACGAGCCCCAATCAACTCCTCCATAGGAGCACAGTCTGGCTCTAAGGGTCTGCACCCAGTGAAACAGGAGCccatggatgtgtgtgtgcagggagcCCTCCTGCCAGAGAGTGCAGTGACTGTGACCACAGTAGTGAAAGAAGAGAAGCTGGACATGCCTGCTTTTCCCTCCACATCGCAGGATATTAAACCTGTGGCCAAAGtggagtgtcCAGTGTGTGGAGTGGAAGTGTCCCAGCAACATATTAATAAACATCTGGATACATGTCTGACCAGAGGGGAGAAGAAGGATAGCCTTAGAAGGTCTGACCAGCTAGGCTTTTCCTGTTCTGCATTTATAGACCCCAACTCTCGGAAGCGCAGGCCTATGGCTAAGCTGGTGTACACCCTGCTGACAATGGTGGAGCTAAAGAGAAGACTGAGAGAGTGCCATCTGTCCACACAAGGCTCCAGAGAGCAGCTCATCCGACGGCACCAGGAGTTCATACACATCTACAACGCACAGTGTGATGCACTCAACCCCAGATCAAGTGAGGACATTGCTAGAGAGGTTGAAAACAATGAGAAGATGAGGAATCAGCTGGAGAGTAAAAATAAACCTGCAATACTCATCACTAAAAACCACACAGTCACTGAAATTGAACAGTTGCACTCAGATTACCGGAAACAGCACAGTGGTGAGTTTTCCCGTTTAATTGCTCAGGTCAGAGGTCGTTTGGAAAATTCCAGGAGAACACAAATTAAGCAGGAAGGAGGGAAATCAGCAGAGGAATTGTGTTGCAGTGCTGATGACACAGTAGTCCAAAACACACCCCAGCCCCCAGGTTCTTTGACATTGGAAATTGCCACCAATGAGAAGACTTCTGTTATGGAACTTGGGTCGAGGTCACCAAGCCCTACTCTCAGTGAAGTGTCTGTCAGCAGCTCCATTTCTGATGTTTTCAGTTGAAGACCAGAAGGAAGCTACCTGTctaaATCACTGATCAGACCAATGGCGAATAAAATTCACCTGGCAGAAAAAGCTGACTCGCTGAATGGAAAGGATATGGAAGAAGCAGATTTGTGTCtggttgtgtttatttttgtgttgcaTCAGCTTTATCTAGGAGAACTTTAACATGTAAATTTATAAGCCTCTGTCTGagccaaaagaaaacaagaaggaTCAGGACTGTGGTCTCTGTGGTGAACAACAAAAAAGGAGGAGATGCTAAGTAGTAAGCACTGCTCACACCAAACTTTTGCCTCACCGTTTTTTCTTTACTGCGGCTTGGCACATCTTTT

Function

symbol description
rad18 Predicted to enable metal ion binding activity; single-stranded DNA binding activity; and ubiquitin protein ligase activity. Predicted to be involved in postreplication repair and protein monoubiquitination. Predicted to act upstream of or within DNA repair. Predicted to be part of Rad6-Rad18 complex. Predicted to be active in nucleus. Orthologous to human RAD18 (RAD18 E3 ubiquitin protein ligase).

NR:

description
E3 ubiquitin-protein ligase RAD18-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10627 RAD18; E3 ubiquitin-protein ligase RAD18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314042.1 False 1754 mRNA 0.46 13 15525560 15568428
XM_034314047.1 False 1681 mRNA 0.46 13 15505644 15568428
XM_034314051.1 False 1728 mRNA 0.46 14 15505644 15568428
XM_034314053.1 True 1806 mRNA 0.46 14 15511866 15568428

Neighbor

gene id symbol gene type direction distance location
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding downstream 226931 15276905 ~ 15278713 (-)
nprl2 nprl2 coding downstream 466041 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 473082 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 481111 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 496461 14887465 ~ 15009183 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 49923 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 183785 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 194108 15762536 ~ 15775878 (-)
wdr82 wdr82,swd2,LOC106565976 coding upstream 209762 15778190 ~ 15784244 (-)
cplane2 rsg1,LOC107673497,LOC107750284,LOC107712114 coding upstream 223140 15791568 ~ 15794776 (-)
G27953 NA non-coding downstream 1601 15503832 ~ 15504043 (-)
G27935 NA non-coding downstream 27636 15477790 ~ 15478008 (-)
G27932 NA non-coding downstream 33097 15472341 ~ 15472547 (-)
G27904 LOC108271919 non-coding downstream 121554 15382914 ~ 15384090 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding downstream 259291 15244315 ~ 15246353 (-)
G28173 NA non-coding upstream 46597 15615025 ~ 15616748 (-)
G28182 NA non-coding upstream 113142 15681570 ~ 15682044 (-)
G28191 NA non-coding upstream 152339 15720767 ~ 15725456 (-)
G28207 NA non-coding upstream 218425 15786853 ~ 15788153 (-)
G28232 NA non-coding upstream 360613 15929041 ~ 15933858 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 10435 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 44643 15456635 ~ 15461001 (-)
G27843 NA other downstream 206625 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 629654 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1447199 14050401 ~ 14058445 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 557402 16125830 ~ 16135715 (-)
G29158 NA other upstream 1704527 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1903902 17472330 ~ 17529315 (-)
G29263 NA other upstream 2380729 17949157 ~ 17949718 (-)
G29279 NA other upstream 2502559 18070987 ~ 18072909 (-)

Expression


Co-expression Network