Gene
RNA
| Item | Value |
|---|---|
| gene id | ptprfa |
| gene name | ptprf,ptprfa,LOC107709086 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 16625654 ~ 16832868 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| ptprfa | Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within sensory neuron axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system; pectoral fin; pharyngeal arch; and somite. Human ortholog(s) of this gene implicated in hyperinsulinism. Orthologous to human PTPRF (protein tyrosine phosphatase receptor type F). |
| ptprf | Enables cell adhesion molecule binding activity and protein tyrosine phosphatase activity. Involved in several processes, including negative regulation of receptor binding activity; peptidyl-tyrosine dephosphorylation; and synaptic membrane adhesion. Located in extracellular exosome. Implicated in hyperinsulinism. Biomarker of obesity. |
| description |
|---|
| PREDICTED: receptor-type tyrosine-protein phosphatase F isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0097374 | sensory neuron axon guidance | biological_process |
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| K05695 | PTPRF, LAR; receptor-type tyrosine-protein phosphatase F |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034314146.1 | True | 8480 | mRNA | 0.51 | 37 | 16625654 | 16832868 |
| XM_034314149.1 | False | 8253 | mRNA | 0.51 | 37 | 16625654 | 16785855 |
| XM_034314159.1 | False | 8409 | mRNA | 0.51 | 37 | 16625654 | 16832868 |
| XM_034314170.1 | False | 8468 | mRNA | 0.51 | 36 | 16625654 | 16832868 |
| XM_034314175.1 | False | 8468 | mRNA | 0.51 | 36 | 16625654 | 16832868 |
| XM_034314176.1 | False | 8462 | mRNA | 0.51 | 36 | 16625654 | 16832868 |
| XM_034314178.1 | False | 8450 | mRNA | 0.51 | 35 | 16625654 | 16832868 |
| XM_034314179.1 | False | 8447 | mRNA | 0.51 | 36 | 16625654 | 16832868 |
| XM_034314182.1 | False | 8435 | mRNA | 0.51 | 35 | 16625654 | 16832868 |
| XM_034314188.1 | False | 8404 | mRNA | 0.51 | 33 | 16625654 | 16832867 |
| XM_034314192.1 | False | 8173 | mRNA | 0.50 | 36 | 16625654 | 16832867 |
| XM_034314197.1 | False | 8161 | mRNA | 0.50 | 35 | 16625654 | 16832867 |
| XM_034314201.1 | False | 8143 | mRNA | 0.50 | 34 | 16625654 | 16832867 |
| XM_034314203.1 | False | 8140 | mRNA | 0.50 | 35 | 16625654 | 16832867 |
| XM_034314209.1 | False | 8097 | mRNA | 0.50 | 32 | 16625654 | 16832866 |
| XM_034314213.1 | False | 8456 | mRNA | 0.51 | 35 | 16625654 | 16832868 |
| XM_034314220.1 | False | 8149 | mRNA | 0.50 | 34 | 16625654 | 16832867 |
| XM_034314227.1 | False | 8130 | mRNA | 0.50 | 33 | 16625654 | 16832866 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| kdm4aa | kdm4aa,kdm4a,LOC108412690 | coding | downstream | 3057 | 16589347 ~ 16622597 (-) |
| st3gal3a | st3gal3,LOC108412691 | coding | downstream | 39408 | 16534768 ~ 16586246 (-) |
| LOC113523777 | artn | coding | downstream | 106496 | 16491681 ~ 16519158 (-) |
| rad54l | rad54l | coding | downstream | 136725 | 16476425 ~ 16488929 (-) |
| LOC113531657 | LOC108272136 | coding | downstream | 171088 | 16436840 ~ 16454566 (-) |
| szt2 | szt2 | coding | upstream | 233487 | 17066355 ~ 17169352 (-) |
| med8 | med8,LOC107690829,LOC107554872,LOC107708572 | coding | upstream | 353777 | 17186645 ~ 17191459 (-) |
| LOC113536221 | NA | coding | upstream | 365121 | 17197989 ~ 17203249 (-) |
| pbx1b | pbx1,pbx1b,LOC108272157,LOC103479586 | coding | upstream | 387716 | 17220584 ~ 17294005 (-) |
| sec16b | sec16b | coding | upstream | 605772 | 17438640 ~ 17462625 (-) |
| G28779 | NA | non-coding | downstream | 54130 | 16570790 ~ 16571524 (-) |
| G28537 | NA | non-coding | downstream | 135739 | 16462102 ~ 16489915 (-) |
| G28508 | NA | non-coding | downstream | 266133 | 16358139 ~ 16359521 (-) |
| G28515 | NA | non-coding | downstream | 296233 | 16329108 ~ 16329421 (-) |
| G28385 | NA | non-coding | downstream | 358899 | 16266556 ~ 16266755 (-) |
| G29119 | NA | non-coding | upstream | 221220 | 17054088 ~ 17054656 (-) |
| G29167 | LOC108272186 | non-coding | upstream | 560590 | 17393458 ~ 17394467 (-) |
| G29166 | LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 | non-coding | upstream | 561898 | 17394766 ~ 17396199 (-) |
| LOC113528975 | NA | non-coding | upstream | 591003 | 17423871 ~ 17429778 (-) |
| G29174 | NA | non-coding | upstream | 600585 | 17433453 ~ 17434168 (-) |
| eif4enif1 | eif4enif1,LOC107568191,LOC107584417 | other | downstream | 489939 | 16125830 ~ 16135715 (-) |
| oxtr | oxtr,LOC107584509,LOC107673460,LOC107658098 | other | downstream | 1130445 | 15461950 ~ 15495209 (-) |
| G27925 | cav3,LOC107749619,LOC107584510,LOC107577493 | other | downstream | 1164653 | 15456635 ~ 15461001 (-) |
| G27843 | NA | other | downstream | 1326635 | 15297309 ~ 15299019 (-) |
| pxmp4 | pxmp4,LOC103464829 | other | downstream | 1749664 | 14872948 ~ 14875990 (-) |
| G29158 | NA | other | upstream | 440087 | 17272955 ~ 17280173 (-) |
| si:dkey-44g17.6 | LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 | other | upstream | 639462 | 17472330 ~ 17529315 (-) |
| G29263 | NA | other | upstream | 1116289 | 17949157 ~ 17949718 (-) |
| G29279 | NA | other | upstream | 1238119 | 18070987 ~ 18072909 (-) |
| zgc:153916 | LOC108271870,LOC108413223,LOC107749976 | other | upstream | 1315360 | 18148228 ~ 18195628 (-) |
