stx16 (stx16,LOC107708146,LOC107685804,LOC107554194)


Basic Information

Item Value
gene id stx16
gene name stx16,LOC107708146,LOC107685804,LOC107554194
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3938000 ~ 3958819 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314242.1
GGCTCCACGCTTTTCCCGGAAGTGTCCATGACGCTCTTCTCGTTTGTAGCCTCTCACTATTTCTTCAAATGTCTTTGTTCAAAGCGGATATGATCTCATGTTTACGTATTACACACCTCAGTGGCCCTAAAGTGGTCTATTGACGCTCTGAGTTGAAAAGGGGACACTAGACGTAGTCTATTATCGttctttattattgttttagtgTAGAAACCGAGGCTAGTGAGACTACACCGGACGCATTGTCAGTCGGCGcgctgtcagtctgtctgtctgtctgtctgctctgcTGGAGGCTAAACTCGCTAGCACTCGGTAGCTGCCTGCCAGAATCAGCAGACAGAAAGCGAGCCAGAGGCAGTCAGCCATTATTTGATTGCGGTAACCTGCCCTCTTATGTACTGAAAGTAGTCATGGCAACTAGGCGCCTGACCGATGCCTTCTTATTAATGCGGAACAATGCGATCCAAAACCGACAGATATTGGCTGAGCAAGTGAGTACCTATGAGCCCCGTCGCACTCTGAATACACGTAGCAATGCTGCGGAGTATGATGAGCTGGTGGATGATCGGATGGCTCTGGTGTCTGGAATTAGTTTGGATCCAGAGGCTGGCATCGGTGTCACCAAAAGGCTCTCACCCAAATGGATAGAGGGTGTGGATGAGATTCAGTACGAGATCACACGTATACGGCAGAAAATGAAGGAGCTGGCAAGTCTGCATGATAGACACATGAACCGGCCGACACTGGATGACAGCACCAAGGAGGAGCATGCCATCGAGATCACTACCCAGGAAATCACACAGatgttccATCGTTGTCAGCGTGCAGTGGTGGGGCTGCAGTCGCGGTCTGGTCACTGTACAGAGCAGGAGGGGAGGCTGCTCAGAAACGTCATCTCCTCATTGGCTCAGAGCCTTCAGGAGCTCTCAACCAACTTTAGACACACACAATCGAGTTACCTGAAACGCATGAAGAATCGTGAAGAAAGGTCTAAACACTTCTTTGACTCTGGGCCTTTgatggaggaggatgaaggCATAGCACTACATGACAGGggtTTTACAGATGACCAGCTTGCTCTGGTGGAGCAAAACACAGTAATGGTGGAAGAGAGGGAGCGAGACATCCAGCAAATTGTACAGTCCATCTCTGATCTTAATGAGATTTTTCGAGACCTTGCTAGCATGGTGGTAGAGCagGGTACAGTTCTTGACAGAATTGACTTCAACGTGGAGCAAGCCTGCATCAAAACGGAGGATGGACTGAAACAGTTACAAAAGGCTGAacagtaccaaaaaaaaaatcgaaagaTGCTGGTGATTTTAATCCTGTTTGTCATAGTCATCATTCTAATCCTTGTTCTGTTTATGACAAAGTTCCAATGATGCAGTTTATGTGTACCCAACTGAAGAAGCAAGCTCTTTTGTGTGAACTTCCTGTGAGCCATCTATTCTCACATAAACGCAATATAAAGAAACAGCGCCCACTAATGTTCTTCTTGTGCAGAATTTGGCGTTTCAGATAAATCCAGTGACATGAAAAGGGTGCAGTTTCCCCTCCTGTTACACAGGCTTCAAAGTAAGCCAGTCTTTGTGCTTTAACGAATTGTTTTCCATAACTGTTTTCAAGTTGTCTTGTTCTCAGTAAGGACTGGATGTGTAAGTAAAACGACAGCTTCTTCTTTAATACTGTTGCTACACAGAAAAGCACCTCTCAAATCCACCCAAAAGCTAGAAGCCTagttttgtgtgtctttttcttatccaaaagtttctttttttgcttccatTCCTTGTCTTCAGTTTCATTTGTAAttaacaacagcagaaaacaaagaaagatgCAAAAACAACAATTCTTTAGTTGTTGGCCCTTTAAAAAGGAGTCCATCGTTCCTGGTTATAATGTGCACACTACAGCATGCTTTCACACAGTCCCTGAACTTGATTCCAGAATTTGCTTAATGAGGAGCAAAAACAGGGAGATACCATGAAAAGTGGAACATTGTTCTAGTAGTTCAGAAACATGAGGAAGTGTTTCATAAGTGACCAAATGTTCTCTTGATCATGAGAGACTTGTGACCTGAATAAATAGCTTTGGTTCAGTCTGCTTGGGGTGTTGGCATTTTGCCCTTCTCAGTTGAATAATGGTTTTTATAACCACACACCtgtgtgatttattaaaatttagaTTACAAATGttaa
>XM_034314247.1
GGCTCCACGCTTTTCCCGGAAGTGTCCATGACGCTCTTCTCGTTTGTAGCCTCTCACTATTTCTTCAAATGTCTTTGTTCAAAGCGGATATGATCTCATGTTTACGTATTACACACCTCAGTGGCCCTAAAGTGGTCTATTGACGCTCTGAGTTGAAAAGGGGACACTAGACGTAGTCTATTATCGttctttattattgttttagtgTAGAAACCGAGGCTAGTGAGACTACACCGGACGCATTGTCAGTCGGCGcgctgtcagtctgtctgtctgtctgtctgctctgcTGGAGGCTAAACTCGCTAGCACTCGGTAGCTGCCTGCCAGAATCAGCAGACAGAAAGCGAGCCAGAGGCAGTCAGCCATTATTTGATTGCGGTAACCTGCCCTCTTATGTACTGAAAGTAGTCATGGCAACTAGGCGCCTGACCGATGCCTTCTTATTAATGCGGAACAATGCGATCCAAAACCGACAGATATTGGCTGAGCAAGTGAGTACCTATGAGCCCCGTCGCACTCTGAATACACGTAGCAATGCTGCGCTGGTGGATGATCGGATGGCTCTGGTGTCTGGAATTAGTTTGGATCCAGAGGCTGGCATCGGTGTCACCAAAAGGCTCTCACCCAAATGGATAGAGGGTGTGGATGAGATTCAGTACGAGATCACACGTATACGGCAGAAAATGAAGGAGCTGGCAAGTCTGCATGATAGACACATGAACCGGCCGACACTGGATGACAGCACCAAGGAGGAGCATGCCATCGAGATCACTACCCAGGAAATCACACAGatgttccATCGTTGTCAGCGTGCAGTGGTGGGGCTGCAGTCGCGGTCTGGTCACTGTACAGAGCAGGAGGGGAGGCTGCTCAGAAACGTCATCTCCTCATTGGCTCAGAGCCTTCAGGAGCTCTCAACCAACTTTAGACACACACAATCGAGTTACCTGAAACGCATGAAGAATCGTGAAGAAAGGTCTAAACACTTCTTTGACTCTGGGCCTTTgatggaggaggatgaaggCATAGCACTACATGACAGGggtTTTACAGATGACCAGCTTGCTCTGGTGGAGCAAAACACAGTAATGGTGGAAGAGAGGGAGCGAGACATCCAGCAAATTGTACAGTCCATCTCTGATCTTAATGAGATTTTTCGAGACCTTGCTAGCATGGTGGTAGAGCagGGTACAGTTCTTGACAGAATTGACTTCAACGTGGAGCAAGCCTGCATCAAAACGGAGGATGGACTGAAACAGTTACAAAAGGCTGAacagtaccaaaaaaaaaatcgaaagaTGCTGGTGATTTTAATCCTGTTTGTCATAGTCATCATTCTAATCCTTGTTCTGTTTATGACAAAGTTCCAATGATGCAGTTTATGTGTACCCAACTGAAGAAGCAAGCTCTTTTGTGTGAACTTCCTGTGAGCCATCTATTCTCACATAAACGCAATATAAAGAAACAGCGCCCACTAATGTTCTTCTTGTGCAGAATTTGGCGTTTCAGATAAATCCAGTGACATGAAAAGGGTGCAGTTTCCCCTCCTGTTACACAGGCTTCAAAGTAAGCCAGTCTTTGTGCTTTAACGAATTGTTTTCCATAACTGTTTTCAAGTTGTCTTGTTCTCAGTAAGGACTGGATGTGTAAGTAAAACGACAGCTTCTTCTTTAATACTGTTGCTACACAGAAAAGCACCTCTCAAATCCACCCAAAAGCTAGAAGCCTagttttgtgtgtctttttcttatccaaaagtttctttttttgcttccatTCCTTGTCTTCAGTTTCATTTGTAAttaacaacagcagaaaacaaagaaagatgCAAAAACAACAATTCTTTAGTTGTTGGCCCTTTAAAAAGGAGTCCATCGTTCCTGGTTATAATGTGCACACTACAGCATGCTTTCACACAGTCCCTGAACTTGATTCCAGAATTTGCTTAATGAGGAGCAAAAACAGGGAGATACCATGAAAAGTGGAACATTGTTCTAGTAGTTCAGAAACATGAGGAAGTGTTTCATAAGTGACCAAATGTTCTCTTGATCATGAGAGACTTGTGACCTGAATAAATAGCTTTGGTTCAGTCTGCTTGGGGTGTTGGCATTTTGCCCTTCTCAGTTGAATAATGGTTTTTATAACCACACACCtgtgtgatttattaaaatttagaTTACAAATGttaa
>XM_034314254.1
GCTCCACGCTTTTCCCGGAAGTGTCCATGACGCTCTTCTCGTTTGTAGCCTCTCACTATTTCTTCAAATGTCTTTGTTCAAAGCGGATATGATCTCATGTTTACGTATTACACACCTCAGTGGCCCTAAAGTGGTCTATTGACGCTCTGAGTTGAAAAGGGGACACTAGACGTAGTCTATTATCGttctttattattgttttagtgTAGAAACCGAGGCTAGTGAGACTACACCGGACGCATTGTCAGTCGGCGcgctgtcagtctgtctgtctgtctgtctgctctgcTGGAGGCTAAACTCGCTAGCACTCGGTAGCTGCCTGCCAGAATCAGCAGACAGAAAGCGAGCCAGAGGCAGTCAGCCATTATTTGATTGCGGTAACCTGCCCTCTTATGTACTGAAAGTAGTCATGGCAACTAGGCGCCTGACCGATGCCTTCTTATTAATGCGGAACAATGCGATCCAAAACCGACAGATATTGGCTGAGCAAGAGTATGATGAGCTGGTGGATGATCGGATGGCTCTGGTGTCTGGAATTAGTTTGGATCCAGAGGCTGGCATCGGTGTCACCAAAAGGCTCTCACCCAAATGGATAGAGGGTGTGGATGAGATTCAGTACGAGATCACACGTATACGGCAGAAAATGAAGGAGCTGGCAAGTCTGCATGATAGACACATGAACCGGCCGACACTGGATGACAGCACCAAGGAGGAGCATGCCATCGAGATCACTACCCAGGAAATCACACAGatgttccATCGTTGTCAGCGTGCAGTGGTGGGGCTGCAGTCGCGGTCTGGTCACTGTACAGAGCAGGAGGGGAGGCTGCTCAGAAACGTCATCTCCTCATTGGCTCAGAGCCTTCAGGAGCTCTCAACCAACTTTAGACACACACAATCGAGTTACCTGAAACGCATGAAGAATCGTGAAGAAAGGTCTAAACACTTCTTTGACTCTGGGCCTTTgatggaggaggatgaaggCATAGCACTACATGACAGGggtTTTACAGATGACCAGCTTGCTCTGGTGGAGCAAAACACAGTAATGGTGGAAGAGAGGGAGCGAGACATCCAGCAAATTGTACAGTCCATCTCTGATCTTAATGAGATTTTTCGAGACCTTGCTAGCATGGTGGTAGAGCagGGTACAGTTCTTGACAGAATTGACTTCAACGTGGAGCAAGCCTGCATCAAAACGGAGGATGGACTGAAACAGTTACAAAAGGCTGAacagtaccaaaaaaaaaatcgaaagaTGCTGGTGATTTTAATCCTGTTTGTCATAGTCATCATTCTAATCCTTGTTCTGTTTATGACAAAGTTCCAATGATGCAGTTTATGTGTACCCAACTGAAGAAGCAAGCTCTTTTGTGTGAACTTCCTGTGAGCCATCTATTCTCACATAAACGCAATATAAAGAAACAGCGCCCACTAATGTTCTTCTTGTGCAGAATTTGGCGTTTCAGATAAATCCAGTGACATGAAAAGGGTGCAGTTTCCCCTCCTGTTACACAGGCTTCAAAGTAAGCCAGTCTTTGTGCTTTAACGAATTGTTTTCCATAACTGTTTTCAAGTTGTCTTGTTCTCAGTAAGGACTGGATGTGTAAGTAAAACGACAGCTTCTTCTTTAATACTGTTGCTACACAGAAAAGCACCTCTCAAATCCACCCAAAAGCTAGAAGCCTagttttgtgtgtctttttcttatccaaaagtttctttttttgcttccatTCCTTGTCTTCAGTTTCATTTGTAAttaacaacagcagaaaacaaagaaagatgCAAAAACAACAATTCTTTAGTTGTTGGCCCTTTAAAAAGGAGTCCATCGTTCCTGGTTATAATGTGCACACTACAGCATGCTTTCACACAGTCCCTGAACTTGATTCCAGAATTTGCTTAATGAGGAGCAAAAACAGGGAGATACCATGAAAAGTGGAACATTGTTCTAGTAGTTCAGAAACATGAGGAAGTGTTTCATAAGTGACCAAATGTTCTCTTGATCATGAGAGACTTGTGACCTGAATAAATAGCTTTGGTTCAGTCTGCTTGGGGTGTTGGCATTTTGCCCTTCTCAGTTGAATAATGGTTTTTATAACCACACACCtgtgtgatttattaaaatttagaTTACAAATGttaa
>XM_034314260.1
GCTCCACGCTTTTCCCGGAAGTGTCCATGACGCTCTTCTCGTTTGTAGCCTCTCACTATTTCTTCAAATGTCTTTGTTCAAAGCGGATATGATCTCATGTTTACGTATTACACACCTCAGTGGCCCTAAAGTGGTCTATTGACGCTCTGAGTTGAAAAGGGGACACTAGACGTAGTCTATTATCGttctttattattgttttagtgTAGAAACCGAGGCTAGTGAGACTACACCGGACGCATTGTCAGTCGGCGcgctgtcagtctgtctgtctgtctgtctgctctgcTGGAGGCTAAACTCGCTAGCACTCGGTAGCTGCCTGCCAGAATCAGCAGACAGAAAGCGAGCCAGAGGCAGTCAGCCATTATTTGATTGCGGTAACCTGCCCTCTTATGTACTGAAAGTAGTCATGGCAACTAGGCGCCTGACCGATGCCTTCTTATTAATGCGGAACAATGCGATCCAAAACCGACAGATATTGGCTGAGCAACTGGTGGATGATCGGATGGCTCTGGTGTCTGGAATTAGTTTGGATCCAGAGGCTGGCATCGGTGTCACCAAAAGGCTCTCACCCAAATGGATAGAGGGTGTGGATGAGATTCAGTACGAGATCACACGTATACGGCAGAAAATGAAGGAGCTGGCAAGTCTGCATGATAGACACATGAACCGGCCGACACTGGATGACAGCACCAAGGAGGAGCATGCCATCGAGATCACTACCCAGGAAATCACACAGatgttccATCGTTGTCAGCGTGCAGTGGTGGGGCTGCAGTCGCGGTCTGGTCACTGTACAGAGCAGGAGGGGAGGCTGCTCAGAAACGTCATCTCCTCATTGGCTCAGAGCCTTCAGGAGCTCTCAACCAACTTTAGACACACACAATCGAGTTACCTGAAACGCATGAAGAATCGTGAAGAAAGGTCTAAACACTTCTTTGACTCTGGGCCTTTgatggaggaggatgaaggCATAGCACTACATGACAGGggtTTTACAGATGACCAGCTTGCTCTGGTGGAGCAAAACACAGTAATGGTGGAAGAGAGGGAGCGAGACATCCAGCAAATTGTACAGTCCATCTCTGATCTTAATGAGATTTTTCGAGACCTTGCTAGCATGGTGGTAGAGCagGGTACAGTTCTTGACAGAATTGACTTCAACGTGGAGCAAGCCTGCATCAAAACGGAGGATGGACTGAAACAGTTACAAAAGGCTGAacagtaccaaaaaaaaaatcgaaagaTGCTGGTGATTTTAATCCTGTTTGTCATAGTCATCATTCTAATCCTTGTTCTGTTTATGACAAAGTTCCAATGATGCAGTTTATGTGTACCCAACTGAAGAAGCAAGCTCTTTTGTGTGAACTTCCTGTGAGCCATCTATTCTCACATAAACGCAATATAAAGAAACAGCGCCCACTAATGTTCTTCTTGTGCAGAATTTGGCGTTTCAGATAAATCCAGTGACATGAAAAGGGTGCAGTTTCCCCTCCTGTTACACAGGCTTCAAAGTAAGCCAGTCTTTGTGCTTTAACGAATTGTTTTCCATAACTGTTTTCAAGTTGTCTTGTTCTCAGTAAGGACTGGATGTGTAAGTAAAACGACAGCTTCTTCTTTAATACTGTTGCTACACAGAAAAGCACCTCTCAAATCCACCCAAAAGCTAGAAGCCTagttttgtgtgtctttttcttatccaaaagtttctttttttgcttccatTCCTTGTCTTCAGTTTCATTTGTAAttaacaacagcagaaaacaaagaaagatgCAAAAACAACAATTCTTTAGTTGTTGGCCCTTTAAAAAGGAGTCCATCGTTCCTGGTTATAATGTGCACACTACAGCATGCTTTCACACAGTCCCTGAACTTGATTCCAGAATTTGCTTAATGAGGAGCAAAAACAGGGAGATACCATGAAAAGTGGAACATTGTTCTAGTAGTTCAGAAACATGAGGAAGTGTTTCATAAGTGACCAAATGTTCTCTTGATCATGAGAGACTTGTGACCTGAATAAATAGCTTTGGTTCAGTCTGCTTGGGGTGTTGGCATTTTGCCCTTCTCAGTTGAATAATGGTTTTTATAACCACACACCtgtgtgatttattaaaatttagaTTACAAATGttaa

Function

symbol description
stx16 Predicted to enable SNAP receptor activity and SNARE binding activity. Acts upstream of or within pronephric duct morphogenesis. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system. Predicted to be integral component of membrane. Is expressed in pronephric duct. Human ortholog(s) of this gene implicated in pseudohypoparathyroidism type IB. Orthologous to human STX16 (syntaxin 16).

NR:

description
syntaxin-16-like isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0039023 pronephric duct morphogenesis biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08489 STX16; syntaxin 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314242.1 True 2207 mRNA 0.44 9 3938000 3958819
XM_034314247.1 False 2195 mRNA 0.44 8 3938000 3958819
XM_034314254.1 False 2155 mRNA 0.44 9 3938000 3958818
XM_034314260.1 False 2143 mRNA 0.44 8 3938000 3958818

Neighbor

gene id symbol gene type direction distance location
tubb1 tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746 coding downstream 92276 3839963 ~ 3845724 (-)
LOC113545812 LOC107667744,LOC107582924 coding downstream 114717 3817517 ~ 3823283 (-)
vapb vapb,LOC101078863 coding downstream 132391 3788470 ~ 3805609 (-)
ctsz ctsz,LOC107729770,LOC107596856,LOC107708086,LOC107666025 coding downstream 226243 3704874 ~ 3711757 (-)
LOC113545819 LOC108271666 coding downstream 399979 3530784 ~ 3538021 (-)
si:ch211-181l5.2 LOC108273231 coding upstream 45803 4004622 ~ 4008577 (-)
si:busm1-52i16.2 LOC108272376 coding upstream 64971 4023790 ~ 4025978 (-)
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding upstream 75252 4034071 ~ 4039284 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding upstream 400301 4359120 ~ 4365171 (-)
LOC117596284 NA coding upstream 488548 4447367 ~ 4447479 (-)
G21358 NA non-coding downstream 5432 3932136 ~ 3932568 (-)
G21306 NA non-coding downstream 152446 3785140 ~ 3785554 (-)
G21303 NA non-coding downstream 222957 3713299 ~ 3715043 (-)
G21153 NA non-coding downstream 281328 3656395 ~ 3656672 (-)
LOC117599952 LOC108271653,LOC108271638,LOC108271644,LOC108271652 non-coding downstream 386049 3549631 ~ 3551951 (-)
G21377 NA non-coding upstream 35060 3993879 ~ 3999636 (-)
G21382 NA non-coding upstream 50312 4009131 ~ 4009340 (-)
LOC113545971 NA non-coding upstream 85745 4044564 ~ 4062409 (-)
G21400 LOC108272755 non-coding upstream 118309 4077128 ~ 4077827 (-)
G21341 NA non-coding upstream 152463 4111282 ~ 4111654 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 160012 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 201114 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 566846 3348308 ~ 3371154 (-)
LOC113545802 NA other downstream 1304320 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 2115332 1756160 ~ 1822668 (-)
G21434 NA other upstream 297849 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 373280 4332099 ~ 4332171 (-)
obsl1a obsl1 other upstream 854456 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 1152643 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 1447148 5405967 ~ 5414086 (-)

Expression


Co-expression Network