LOC113527312


Basic Information

Item Value
gene id LOC113527312
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18841437 ~ 18857162 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314518.1
ATGAATCCCTTGCAACCGGCCAGATCGCCAGCGTACTTCTTGGGCCATGTGATGAGTGATGGGACAGATTGGGGTTTTGCTGGCAGTGGAACCTACGTAGCTGGCATGATGGCCTGGATGCTGCCCCATCAGGGCGGACAGGATCAGTTTCACAAACATGACAGGGATTACTGTAAGGGTACCAAACCCTCTTACCAAACCCCCTTACCCCCTAAACCCCAGATAAAAGGGGGTATACCACAGAAGGTCCTGGATTCCCCTCCAAGCAGCACTAACACGACAAGTGGTGCACAATACAGACCGACCCCTAAACCTCGCCTACGCAAACCTGGTCCCCTAAAGGATACCCTGAACCGAACTGGCAATGCTGATCAACCCTCTTTGTGTAACACGGACAATGCTGCCCCAAATGGATCCAGTGAGAGCCACTCTGTTCCTCCAGCCTGCCCACCCTGCTGTCCTTGTGTTTGTCATTATTCCAGCATGTACGGACAAAAGAAAAGCCAACAGTATGAGGACAATTATATCATTAGCTCAGAGAATAAAGACAATAAGGAACCCAGAAGAGTCCCTCCAGCTATACCTGTACCTGCAAGACCTCTTCCCAAAGAGCCTTGGCAGATGATCATAATGAATGTAGAAGGAACgactgatgatgataatgaaagCATTTATGCTGAACCTGACATGCCAAAGCATGACGACACAGCACCTGAAAGATATGAACCTGAGCCAAGTGGTGTTGCAATGAAGGTCCCTTCCCAAAAGCCCATTCCTACTGCAAGGATGGCTGCTCAGGAGCAGTCTAAACATCAGGACAGTGAGCATGTCATCTCTAAGAGTTTGAGGAATAAGaagaaaaacaaagcagataaaacaaaacaaaacaaatcatcCATTTCAGTCAAACGTCCGACTACAATTTCCAACTGTTCACGCAGTCAGTTCTTCCAGACCTCTGCAAAATGCCCTGAACAATCAAGTGCAGGTATGGTGCCATCTGCAGGCTTGAAGGTTAAGAGGACAAGAAGCTCTCCATGTAGACAAACTAAAGCAAAGGATGGCCGTTCCTGGAAGATGCTGCAGGACAGCTTATGGCAGGAGCGCTGTGTTGTGAAAGAGAGTGGAATCCTGAACCACTTAACCAAAGAGGAGCTTCTCCTTCAGGAGAGTATTTATGAGGTGGCAACTTCTGAGCAGTCCTATCTTGAACGGCTAACTGTTGTTGTGAATCATTTCATGGAATCTCCAGAACTAAATTCAGCTATAGCTTCCAGAGACCAAAAAGCACTCTTTTCCAGCATGCACAAAATGAGAGAGATCAGCAAGAACTTCCTGGAGTCGATGGTTCAGAATTTGGGCTCCAGGTTGTTTTGTGAAGGTTTCTGTGATGTTGTCCATCGTTATGCCACTGGACCATTCAGTGCTTATGTGGATTACATCCGCAACATACCATGCCAGAAGCAAACACTCATCAAGTTGAGGAAGGAGAGCCCTCGCTTTGTGGAGATCTTAAACAAGCTTCAGGAGGACCCATGTTGCAATCGGCTGCCTCTCGACTCTTTCCTCTCGCTGCCTTTTCAGAGGATCTCCCAACTCAAGGTCTTAATGGAGACAGTCCTAAAGAGGGCAGCCTCAAAGTCAGACATTCAGGCCTCTGCAGAAGCAGCCTTGACTGAGATTTCTGAGgtgCTGGAGGCATGCAATAGGGAAGTGGGTAAGATGAAGCAGATTGAGGAACTTGTCAACATTGCCAACAAAATAGAGTTTGAGTGCAAGgccTTGCCGCTGGTGTCATCTTCTCGCTGGTTAATCAGAGATGGTGAAATGACCCAGCTCACTCTGAATGAGAACATTTTTGTCCAGAGGAAAAATTGCACTGTCCATTTGATCCTCTTCAATGATTTGCTACTGGTTGCCTCAAAGAAAGGGTCAGACAGGTATGTGGTGCATGATCATGTCCACCGTTCCCTCATTGAGGTCACTGAGGGTGCTAAAGTGGAGGATGATCTGGAAGGGTATGACATGAGAAGAGTATTTCTACTGGCTATTTTGAAGAACCACAAAGGAAGCTCATACCAACTTTTACTGCAGACCTCCACACTagaagagagagacagctggcTGAAGGTCCTGAAGAGTGAGGAAGGAGTGTATGAAGAGTGGGATTGTCCTCAGGTGCGATGTATTGAAGCGTATAATGGACAACAACCTGGAGAGCTCAGTCTACAGCCTGAGGACATAGTCAGCATCATCCAGAAAACATCTGATGGTTTAATGGAGGGTCGGAGGCTTCCTGATGGGGAGAGGGGCTGGTTCCCTGCtaagtgtgtgatggagatctctaatgagcatgTGCAGAGACGCAACCTGCGTCAGCGTCACCACGTCCTCCAGGCAGCTGCAAACATCCTAAAACGCCGCAGCATTTGTCAGGACCAGCACACCACTACCTgcttcaacaaatattaattacaatatttattatctgCCTATTTAGTCTTATAGACCCAACGCCAATGTACGTAGCAGCTTTAGGAACTAAAAAAGCACTGGGAActgtatgcatgtatgcatgtttTATATGAGATGGGCTTTTATATGGTTGGTCTACTCTTTACTCTTCAGGGaaataatctgtaaaataatgaaatctaTATTATGATTAATGGTCTCTGTGTGAATAATATTCCCTTTTGTTGTCATGGAGATGGAAAGCATCACTCTTTACTGTGCTAGCTTACAGTTTATTTAACCTCACATTAAAAGTTGATTATATTTCCCAGCTTTTAGGcttttgtaaagtcattatgaGGGAAATAGTGTTGTTCAGAATCTTTCTTTTAGTGGATACTTGAATGGGTTGATTGTAGAGGAGACGCTTATAGTTCatactatttatttttctgcactGAAACCTCAGACTATT

Function

GO: NA

KEGG:

id description
ko00970 Aminoacyl-tRNA biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314518.1 True 2929 mRNA 0.45 17 18841437 18857162

Neighbor

gene id symbol gene type direction distance location
dzip1l LOC108271535 coding upstream 226612 18600959 ~ 18614825 (+)
LOC113536767 LOC108272161 coding upstream 427482 18298375 ~ 18413955 (+)
LOC113532395 kyat3,ccbl2,LOC100332215 coding upstream 694520 18139055 ~ 18146917 (+)
barhl2 barhl2,LOC107749991 coding upstream 918618 17918400 ~ 17922819 (+)
znf644b LOC108271612 coding upstream 1000455 17804545 ~ 17840982 (+)
farp2 farp2 coding downstream 1277 18858439 ~ 18917006 (+)
atg4b atg4b coding downstream 94527 18951689 ~ 18957780 (+)
kif1aa kif1a,kif1aa,LOC108427666,LOC107593169 coding downstream 130841 18988003 ~ 19049750 (+)
scly scly coding downstream 194960 19052122 ~ 19060672 (+)
klhl30 klhl30,LOC107696751,LOC107753621,LOC107752665,LOC107694118 coding downstream 232722 19089884 ~ 19096027 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding upstream 150430 18688653 ~ 18691007 (+)
LOC113530672 NA non-coding upstream 374117 18464884 ~ 18467320 (+)
LOC113536874 NA non-coding upstream 481402 18358202 ~ 18360035 (+)
G29281 znf326 non-coding upstream 755793 18083719 ~ 18085644 (+)
G29106 NA non-coding upstream 1076664 17694754 ~ 17764773 (+)
G29640 NA non-coding downstream 193064 19050226 ~ 19050438 (+)
G29641 NA non-coding downstream 193662 19050824 ~ 19051043 (+)
G29656 NA non-coding downstream 335387 19192549 ~ 19195409 (+)
G29674 NA non-coding downstream 343153 19200315 ~ 19202099 (+)
G29792 NA non-coding downstream 401886 19259048 ~ 19259266 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 5716 18774770 ~ 18835721 (+)
trnai-aau NA other upstream 23962 18817402 ~ 18817475 (+)
tomm6 tomm6 other upstream 2440326 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 2659128 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 2738189 16083289 ~ 16103248 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 75521 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 203935 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 677183 19534345 ~ 19537197 (+)
LOC113543059 c11h1orf146 other downstream 1142884 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 1679811 20536973 ~ 20658080 (+)

Expression


Co-expression Network