si:dkey-148h10.5


Basic Information

Item Value
gene id si:dkey-148h10.5
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21783792 ~ 21795509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314527.1
ATGGCTGGAAGCAAGATCAGTATTTATGTAAAGTTTGGTGAAAATACCAGAATTCATCACCATATTTTCTTTCACAGTGTCAAAAGAAGCCTTCAGGTAGAAGACAAGGAAAACACTCCAGTCAAGCGGCACACCAAGGACAGAAACTGTTCCCCTTTGACTGGAATGAAGCCCATGACCCCAACAGCCAAAACCCAAGCAGGTAATTACAAAACCAGTGGGACCACTGTCTATGCCCTGGAAGCACAACAgccacagacagaaacagagagAATGGATTTTCTCAGGTCTAAATTGGAGGAATCTTTAGAGGCCTTAATGAAGACCAGGCAAGAACTTGAGTCCTTACTGCCTGTAGAGGGCAACAGTGAGCTGAGGAGTTTCTTGCTGATGGGTCCTGCTGACTTGCACACTGAACTGAAGAGACACAAAGAGCTGActtCTAAAGTAAACTTTCATGTTAATGCAACACACATGCACGATAAGTGGCTCCAAGGTCCAACTCAGACTGGCAGTTCCTGTGAGTTTCTGAAGAACATCTTAAGTGGCTGAGAAGGCCAACCTGAACAACAGCTGCTGGCCACACAAACCATCCTATTTCTGCCCAAGGTGGATCATATAACTCTCACTTTATCACCCCCAGAGGCAGCGTGAAGGACAAAAGCACAAGGTGGCCCATTAACAGTACTTGTATTTTCCCATATACTTGGTCTCCTTTTGTTGGAAGTAAAAAATCTTGGGGTGTGGTTTTTGGCATTGATTTTACAAGACTTGTGCTTGGCCATAGCACAGATCTCCACAGCCTCTTCATCCTGACCGTTcgttcacagaaaaaaaacaatatgaatatgaatttccACACTTATCTGTGCACTTCCTTCATTACATTCATGCATTGTTGACtgctcatttctgattggtcagaaggtgctgaatATT

Function

NR:

description
centromere protein R-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314527.1 True 939 mRNA 0.44 9 21783792 21795509

Neighbor

gene id symbol gene type direction distance location
jak1 jak1,LOC107739023,LOC107556544,LOC107659055 coding upstream 335709 21408754 ~ 21448083 (+)
wdr78 wdr78 coding upstream 772062 20999483 ~ 21011730 (+)
ttc22 ttc22 coding upstream 794925 20982532 ~ 20988867 (+)
wwc3 wwc3 coding upstream 835155 20894023 ~ 20948637 (+)
cldn34a cldn34 coding upstream 903325 20876945 ~ 20880467 (+)
dock7 dock7 coding downstream 174465 21969974 ~ 22034090 (+)
kank4 kank4 coding downstream 253007 22048516 ~ 22101105 (+)
LOC117599931 LOC108271599 coding downstream 314439 22109948 ~ 22119632 (+)
cyldl LOC108271977 coding downstream 597319 22392828 ~ 22406479 (+)
ghrhrb ghrhrb,LOC108271568,LOC103030126,LOC108440237,LOC106560417,LOC107692395,LOC107556991,LOC107731650,LOC107704523 coding downstream 631411 22426920 ~ 22474562 (+)
LOC117599889 NA non-coding upstream 141442 21636184 ~ 21642350 (+)
G31384 NA non-coding upstream 170914 21609233 ~ 21612878 (+)
LOC113526220 NA non-coding upstream 377406 21402242 ~ 21406386 (+)
G31260 NA non-coding upstream 398450 21385006 ~ 21385342 (+)
G30791 NA non-coding upstream 689976 21093614 ~ 21093816 (+)
G31565 NA non-coding downstream 30989 21826498 ~ 21826735 (+)
G31567 NA non-coding downstream 35217 21830726 ~ 21830939 (+)
G31693 NA non-coding downstream 352689 22148198 ~ 22148470 (+)
LOC117599240 NA non-coding downstream 369427 22164936 ~ 22165852 (+)
G31704 NA non-coding downstream 386695 22182204 ~ 22188503 (+)
insl5a insl5 other upstream 765925 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 1125712 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 1763566 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 2246595 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 2696581 19061097 ~ 19087211 (+)
tmem69 tmem69 other downstream 802086 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 1838097 23633606 ~ 23653555 (+)
G32684 NA other downstream 2224869 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 2857481 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 3961305 25756814 ~ 25784890 (+)

Expression


Co-expression Network