LOC117599932


Basic Information

Item Value
gene id LOC117599932
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22157708 ~ 22199634 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314538.1
ATTGCATAACTGAAATGTATACATATGAAACATTGGCTTGTTCCTGGTTGATTGTCCTGCTTGTTTGAGGCAGGACCCAAAGTAGAATGTTGTGATGGAATTTTTCTACATTATGATGTCATAAAGGTAAGGCTGCAGTTTTCCCTCACAATGAGCGTTCACTTCAGACCACGTTAAGCCACTGAGGAGGATCGCAGCAAAACACACTGAAGAGGATTGCAGCGTTtctactgaagacaaaactgttACTGACTTTTTTGACAACACGAGAGAGATAACCAAGCTAATGGATATCTTTGTGGATGCCACTGAGAAGGCCACCAGCCAGAATCTGAGAGAAAAGATGAGCCAGAGGACATGCGCCAAGGCTGAAGCTGAGGCTAGGGAACTGATGGGCAGGTTCCTCAAGGATATTGAAGCAAATGACAAAGAACTGAGAGAAAGGATCCGCACTAAGGCCGTTAGGGTACTGATGGGAATTTTCCTCTGCGATACTGAGACAAATGACACCTCCATGAagtTCCTGAAAGAGGTGGATGCTTTagcagaggaagaggatgaagcCATCAGTCAGGTcttggaggaggaagagggaaCAATCGACCTGCCACTGGTAAACGGCAATAAGACAGAGAAGACTGTTGAAAACAGCGGGAAtggaaaggagaaaaagaaatggacCAGGAGAGGGACACGAGGCAAAGGAAGGAagataaattacaaaaagtTCCAGGCCAACAAagaagAAGGAGATAAGGCTGAAGCTGAGGCTGAAGCTGTTTTTGAAGCTGAACCTGATGCTGAAGCTCACACTGATGCTGAAGTTGAGGCTGAAGCTAACATTGATGCTGAAGTTGAGGCTAAAACTGAACATGAGGCTGAAGCTGAAACTGGGGATGAAGCTCACATTGATGCTGAAGTTGAGGCTCAAGCTGAAACTGAACATGAGACTGAAGCTGAGGCTAAAACTGAACATGAGGCTGAAGTTGAGGCTGACACTGAAGCTGAAACTGAGACTGAAGCCGAGTCTAAAACTGAACCTGAGGCTGAACCTGACACTGAGGATGAAGCTCACATTGATGCTGAAGTTGAGGCTCAAGCTGAAACTGAACATGAGGCTGAAGCTGAGGCTAAAACTGAACATGAGGCTGAAGTTCAGGCTGACACTGAAACTGAACCTGAGACTGAAGCTGAGACTAAAACTGAACCTGAGGCTGAAGTTGAAGTTGACACTGAAGCAGAACCTGATGCTGAATGTGctgctgaagaaagaaagacggaTGACGCTGAAACAGAGAACAGCACATCTCTGGATGGAGCAAATGGCAAGGATGCAGACGAGCCTGCTGAAAGCATCaggaaaggaaatgagaaaaagaaaaggaccaGGAGAGGGACACGAGGCAGAGGGAGAAAGATCAATTACAAAAAGGTCCAGGACAACAAAGcagGGATGCTGAAAGAGGTGGATGATGGAGCGGAGGCCGAAGCTATCGGTGACCTGATGAACATCCTCCTGGATGAGACAGAGGAAACTAATGGCCCATCTCTGGcaggaGAAAGTGGGGAGATCACGATGAGTGCTGACATTGAAGCTGAGGCTGAAGCCTTTAATGGTTTCCTCACCGTCCTCCTGGAGGAGATAAGGGACAAGATCAACCTGCCTCTGGgGATGCTGCAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAAGCAGCTCCTGAACGTCTTCCTGGATCAGGCAGGCGAAATGATTGACCTGCCTCTGGggATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGATCAGGCAGAAGAAAAGATCCACCTGCCTCTGGGGATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAAAGTCCCTCTGGatgagacagaagaaaagatcCACCTGCCTCTGGggATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAAAGTCCCTCTGGatgagacagaagaaaagatcCACCTGCTGTCTCTGGgGATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAAAGTCCCTCTGGatgagacagaagaaaagatcCACCTGCCTCTGAggATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAATGTCGTCCTGGATCAAGCAGGGGAAACTTCTGGCCAGTCTCTGGGGATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGATCAAGCAGGGGAAGCTTCTGGCCAGTCTCTGGGGATGTTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGATCAGGCAGGAAAAACTTCTGGCCAGTCTCTGGAGATGCTAAAGGAGGTGGATGATGGGGTGGAGACTGAAGCCATCAACCAGCTCCAGAACGTCTTCCTGGATCAGGCAGAGGAAACTTCTGGCCAGTCTCTGGGGATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGatgagacagaagaaaagatcCACCTGCCTCTGGggATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGATCAGCAAGGCGAATCTTCTGGCCAGTCTCTGGAGATGCTAAAGGAGGTGGATGATGGGGTGGAGACTGAAGCCATCAACCAGCTCCAGAACGTCTTCCTGGATCAGGCAGAGGAAACTTCTGGCCAGTCTCTGGcaggAGAAAGTGGGGAGATCGTGACGAGTGCCAACGCTGAAGCTGAGGCTGAAGTCTTTAATGGTTTCCTCACCGTCCTCCTGGAGGAGACAAGGGACAAGAACAACCTGCCTCTGGAAGAAGTTGAGGCTGAAGCTCAAGAAAGAAATCCAGAAGAGGCTGAAACAGAGAATAGCACATCTCTGGATCAAGTAAACGGCAATAATACAGACGGGCCTGTTGAAAACACTGGGAATGGAaacgagaaaaagaaaaggaccaGGAGAGGGACACGAGGCAAAGGAAGAAagataaattacaaaaagtTCCAGGACAACAAAGcagCTGAGGCCATAGAAAGACCACCAGAAGATGCAGAAACAATGAACAGCACACCTCTGGCAGACAAACCCATGGTGAAGGCGGAAGAAGACTCTGAGCCTAAAGAGGAAATCCAACTCCCTGAGACGGAGACCATTAATGAGCAGCTTCTGACAGGAGAAGAGACACCAAAGATGGAGGAAGAAGCTGAGCTGGAAGGTACTCCCGATGAAGTGAAGGCAAAGAAAAAGGTCAGGAGAGGAACACgaggaagagggagaaaaaTCAACTACAAGAAAGTTGAAGACAAAGAAGCTGAACAGAATTTAGGGAGGAAAGAGCTGACCGACGCCAAAGCATTGAGAGACCAACAtgaaagacagacacaaagaaagccacagacacagtCACATGTCTGGACACACCGTGACAGAGCCTGCGAGTCAGGGTGGAGAGGACCTGCTCACTGGGACTGGAGAGGCAGGAGAATCCTAAGAAGATCAACTCAAGACACACCATCACATGCTGGAGCCTGATCTAttgaacagcacacacacacacacacacacacacacacacacatatatacacacacacatatatacacacacaaaacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314538.1 True 3815 mRNA 0.50 29 22157708 22199634

Neighbor

gene id symbol gene type direction distance location
LOC113538524 NA coding downstream 7470 22144203 ~ 22150238 (-)
usp1 usp1 coding downstream 111250 22035213 ~ 22046458 (-)
angptl3 angptl3 coding downstream 160987 21993695 ~ 21996721 (-)
atg4c atg4c coding downstream 189499 21957535 ~ 21968209 (-)
foxd3 foxd3,foxd1 coding downstream 332234 21822742 ~ 21825474 (-)
mafaa mafa,mafaa,LOC107556987,LOC107591187 coding upstream 119501 22319135 ~ 22322050 (-)
zc3h3 zc3h3 coding upstream 127821 22327455 ~ 22390555 (-)
LOC117599264 zc3h3 coding upstream 190619 22390253 ~ 22392793 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding upstream 284458 22484092 ~ 22514058 (-)
LOC113538473 NA coding upstream 347620 22547254 ~ 22552299 (-)
LOC117596032 NA non-coding downstream 25010 22130425 ~ 22132698 (-)
G31681 NA non-coding downstream 53297 22104198 ~ 22104411 (-)
G31492 NA non-coding downstream 542033 21615321 ~ 21615675 (-)
G31491 NA non-coding downstream 548541 21607396 ~ 21609167 (-)
G31489 NA non-coding downstream 553845 21602544 ~ 21603863 (-)
G31742 NA non-coding upstream 24751 22224385 ~ 22226660 (-)
G31755 NA non-coding upstream 116172 22315806 ~ 22316006 (-)
G31916 NA non-coding upstream 338689 22538323 ~ 22560608 (-)
G31934 NA non-coding upstream 365658 22565292 ~ 22568836 (-)
G32157 NA non-coding upstream 511579 22711213 ~ 22785690 (-)
raver2 raver2 other downstream 626280 21449546 ~ 21531428 (-)
lepr lepr other downstream 839885 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 1728383 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 2143614 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 3340510 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 372798 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 382669 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 1022659 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1415820 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3480456 25680090 ~ 25738817 (-)

Expression


Co-expression Network