LOC113526220


Basic Information

Item Value
gene id LOC113526220
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21402242 ~ 21406386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402742.2
TGAACTTTCCATGTATGACTTTAACCCCCTGTGCTATCTAGGAATGCACTTTTACGTACAGATCTCAGTGATCTCACTTCAGGGCTCACTTCATTGCATTCCTCCACTGCCATTTTGCAGGATTCATGGTAGAATAACAGGTTAAGTTGACTCTAAGGAAGAAAGCGCACTTGTTGATAGcagtggtgcaaaaaaaacGTCAAACCTCCAAACGTcaccgtgttttttttttttcttttttttctagatgtTTCACATGAAATCAGGTCTCAGTTTTTCTAATTGCGACGCATATCATGTATTCGAGAGGAGCCTGCTGAACTGGGCAGGTGACGTCAGAAGTGGGCAGATGTGCGCGCGACGCTCTTCCAGGCACGTGCGCTCGTTGACAACATTTTataccaggtgattttttttattttttttattttttttgtttgcttttatagCCTTCTACAAGACAATAACTAGAGAATTTTCTCCACACGAAGAGCGCTGGTGAGCTTCGGCACCCGGAAGCctgctgattttattttgtcacatgGCTCCGAGATTttcaataacaacaacaaaaatggcGACATATCACGTTGCGTTGCTCGATGTGAGCTTGCTGCGTCATTAAAAGATATTCCCGTAAACACAAGCGAGAAGCAGGAAAGAAAGCCAGATAGGTTAGGTGATATTAGGTCATTTTGGCAGCCACTGACGCCGTCTCGTGACAGCAAAAACCCCGACGAGCTGATCGACTTGTTTACAAGAAGAGATTTGCGCGGAGGGAGGGGCGCGAGTGGGCGGAGCTTTGCCGAGCGGCAAGGCGAGTGGACGAGCCGGAGAAGACGCGCCGCGGAGGGCGGAGCCTACAGGATAATAGCAAGCTGGACGTGAAAGAGGGCGGAGGGGTTTGTATGAGGTATCTGTTGGAGTGCTGTTTAACTGTTGACGCATTAGTCTTATTTTTTGTGATACTTAAAGtctctgaataataataataataaaaaaaaagactttgagAGCTTGAGTCATTATATGTATCTTGgaaatatttaattcatttatttagtaatcCATGTCTAATTAGTGGTCTGTATTGACTAGAGAATTGTCTTTACAACATAGATCCATGATCATGATATGATAATAACATagtaacacaacacaacaaccCTGATTAAATAATAGCTtgataatattttttctttcaatgtttattctgagtgtgtgtagcaTGTCACTGCTTTATTTATGTTGTGCTTCTTATATTCTGTTTGCTGCTTAACAATGAATAATGCCCATGGCTCATATTAGCTTTGGGTAGCTGAGACAGAAAACACCATGTTAAATAACCACCTATGAATACAGCTTTGTTCTTGGGGAACAGTAAAAAGACAAAACCACTTCTCATGCCTGGGGATGTTCCTGTTAGAAAGTGTATGTAAACAGGTATGTGTGGAAACAAGACAGGGAGGTAGTATAATAGAGGGAATTCACTTATTAGTTTTAGTTAGCGTGAAAAGCAGTTGATTTATACTTCACCACTTTTCGTTTAATTCTCGAATCAAAATGAcctgtgtaatataaatataaagtggaTTTGTACTGTTTCATGTTATGTACAGGTAATGGATCAAACACATTAAGTTTCATGTTGAAAGTTTTTTTCTAGTATggtaaataaactttaaataaacaaaaaattaaaatgggAAATTCTGACTTAAACAGAACACAAGGATTAAATACATTCTGTATGAAATATtctactttttaaatgaaataagcaCAGTAATTCTGCATTTCTAAAATGTATACTTggactttcttctttttctcttttgaatttttaaatattgaattaGTTTACATTCACTTTAATCCTGTCTACAGAGGTGGTTTGTTATTTCCCGCAGTCGTATGTCTCCTGTGCGTAAGTATGATTTCTCATGATGTTTTCAGTATGGCTGAAGGTAAGGTATCTGATGGAGAGGACGGACCGGACTTGGCTCTTCTTGATGTGACAGGCTGCCCTTGTTCAGTTATCACAGTGCTGATGCTGTCCGTCTTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTGACATCTGGTTCTTGTGAAGAAGCCTTTCCTATCTTAACAAGTTCTGAATGGTTTGATTGTTGCTATTAGTTATTAGAATTAGTTAACCTAAACTAAATCTGAAACGTAGTCATTTCTAATACTGCACACATTCTTTTGTATGTGGTTTCAGTTGAATTCAAAAATACCATTCTGTATTGCTATGcagatgtaaaataaaaggcTTCATACTGTCA
>XR_004580180.1
TTGTctgaaacatcctgtttctccgGAAAATTTCAACATAATGTGTCTTAGTAAAGTGTTGGTCCACcacgagccaccagaacagcctTAACGCTGCCTGGTATAGAgttctggaactgtactggatccatgaacaccattcttccaaaccatagtccctcagttggtgttctgatgatgatgatgatagacCTGTGTAACATCACTCCAAAATTTCACTGGGGTGAGATCTGTCGACTGTGTCGGCCACAGTGCGTGagttacatcattttcatactcaacAGACCATTCAGCTAGTCCTCATCATCCTGGAAGAGTCCACTCCCATCAGGAGAGGaatatttcatcataggataaagatgtTTCACATGAAATCAGGTCTCAGTTTTTCTAATTGCGACGCATATCATGTATTCGAGAGGAGCCTGCTGAACTGGGCAGGTGACGTCAGAAGTGGGCAGATGTGCGCGCGACGCTCTTCCAGGCACGTGCGCTCGTTGACAACATTTTataccaggtgattttttttattttttttattttttttgtttgcttttatagCCTTCTACAAGACAATAACTAGAGAATTTTCTCCACACGAAGAGCGCTGGTGAGCTTCGGCACCCGGAAGCctgctgattttattttgtcacatgGCTCCGAGATTttcaataacaacaacaaaaatggcGACATATCACGTTGCGTTGCTCGATGTGAGCTTGCTGCGTCATTAAAAGATATTCCCGTAAACACAAGCGAGAAGCAGGAAAGAAAGCCAGATAGGTTAGGTGATATTAGGTCATTTTGGCAGCCACTGACGCCGTCTCGTGACAGCAAAAACCCCGACGAGCTGATCGACTTGTTTACAAGAAGAGATTTGCGCGGAGGGAGGGGCGCGAGTGGGCGGAGCTTTGCCGAGCGGCAAGGCGAGTGGACGAGCCGGAGAAGACGCGCCGCGGAGGGCGGAGCCTACAGGATAATAGCAAGCTGGACGTGAAAGAGGGCGGAGGGGTTTGTATGAGGTATCTGTTGGAGTGCTGTTTAACTGTTGACGCATTAGTCTTATTTTTTGTGATACTTAAAGtctctgaataataataataataaaaaaaaagactttgagAGCTTGAGTCATTATATGTATCTTGgaaatatttaattcatttatttagtaatcCATGTCTAATTAGTGGTCTGTATTGACTAGAGAATTGTCTTTACAACATAGATCCATGATCATGATATGATAATAACATagtaacacaacacaacaaccCTGATTAAATAATAGCTtgataatattttttctttcaatgtttattctgagtgtgtgtagcaTGTCACTGCTTTATTTATGTTGTGCTTCTTATATTCTGTTTGCTGCTTAACAATGAATAATGCCCATGGCTCATATTAGCTTTGGGTAGCTGAGACAGAAAACACCATGTTAAATAACCACCTATGAATACAGCTTTGTTCTTGGGGAACAGTAAAAAGACAAAACCACTTCTCATGCCTGGGGATGTTCCTGTTAGAAAGTGTATGTAAACAGGTATGTGTGGAAACAAGACAGGGAGGTAGTATAATAGAGGGAATTCACTTATTAGTTTTAGTTAGCGTGAAAAGCAGTTGATTTATACTTCACCACTTTTCGTTTAATTCTCGAATCAAAATGAcctgtgtaatataaatataaagtggaTTTGTACTGTTTCATGTTATGTACAGGTAATGGATCAAACACATTAAGTTTCATGTTGAAAGTTTTTTTCTAGTATggtaaataaactttaaataaacaaaaaattaaaatgggAAATTCTGACTTAAACAGAACACAAGGATTAAATACATTCTGTATGAAATATtctactttttaaatgaaataagcaCAGTAATTCTGCATTTCTAAAATGTATACTTggactttcttctttttctcttttgaatttttaaatattgaattaGTTTACATTCACTTTAATCCTGTCTACAGAGGTGGTTTGTTATTTCCCGCAGTCGTATGTCTCCTGTGCGTAAGTATGATTTCTCATGATGTTTTCAGTATGGCTGAAGGTAAGGTATCTGATGGAGAGGACGGACCGGACTTGGCTCTTCTTGATGTGACAGGCTGCCCTTGTTCAGTTATCACAGTGCTGATGCTGTCCGTCTTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTGACATCTGGTTCTTGTGAAGAAGCCTTTCCTATCTTAACAAGTTCTGAATGGTTTGATTGTTGCTATTAGTTATTAGAATTAGTTAACCTAAACTAAATCTGAAACGTAGTCATTTCTAATACTGCACACATTCTTTTGTATGTGGTTTCAGTTGAATTCAAAAATACCATTCTGTATTGCTATGcagatgtaaaataaaaggcTTCATACTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402742.2 False 2322 lncRNA 0.38 2 21403473 21406386
XR_004580180.1 True 2434 lncRNA 0.39 3 21402242 21406386

Neighbor

gene id symbol gene type direction distance location
wdr78 wdr78 coding upstream 390512 20999483 ~ 21011730 (+)
ttc22 ttc22 coding upstream 413375 20982532 ~ 20988867 (+)
wwc3 wwc3 coding upstream 453605 20894023 ~ 20948637 (+)
cldn34a cldn34 coding upstream 521775 20876945 ~ 20880467 (+)
shroom2a shroom2 coding upstream 530546 20824340 ~ 20871696 (+)
jak1 jak1,LOC107739023,LOC107556544,LOC107659055 coding downstream 2368 21408754 ~ 21448083 (+)
si:dkey-148h10.5 NA coding downstream 377406 21783792 ~ 21795509 (+)
dock7 dock7 coding downstream 563588 21969974 ~ 22034090 (+)
kank4 kank4 coding downstream 642130 22048516 ~ 22101105 (+)
LOC117599931 LOC108271599 coding downstream 703562 22109948 ~ 22119632 (+)
G31260 NA non-coding upstream 16900 21385006 ~ 21385342 (+)
G30791 NA non-coding upstream 308426 21093614 ~ 21093816 (+)
G30747 NA non-coding upstream 438601 20963432 ~ 20963641 (+)
G30715 NA non-coding upstream 512532 20835487 ~ 20889710 (+)
G30721 NA non-coding upstream 550566 20848491 ~ 20851676 (+)
G31384 NA non-coding downstream 202847 21609233 ~ 21612878 (+)
LOC117599889 NA non-coding downstream 229798 21636184 ~ 21642350 (+)
G31565 NA non-coding downstream 420112 21826498 ~ 21826735 (+)
G31567 NA non-coding downstream 424340 21830726 ~ 21830939 (+)
G31693 NA non-coding downstream 741812 22148198 ~ 22148470 (+)
insl5a insl5 other upstream 384375 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 744162 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 1382016 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 1865045 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 2315031 19061097 ~ 19087211 (+)
tmem69 tmem69 other downstream 1191209 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 2227220 23633606 ~ 23653555 (+)
G32684 NA other downstream 2613992 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 3246604 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 4350428 25756814 ~ 25784890 (+)

Expression


Co-expression Network