LOC113530672


Basic Information

Item Value
gene id LOC113530672
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18464884 ~ 18467320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403164.2
gcgCGCTTTTCTTCGCGTGAAATAACAAATTGGGCCAATCAGAACGCAGTGAAGTTGGCTCTCAGAAGCTGCGAGTGAAGGAGcaagtgAAGGCCCAGTGCTGGTCCACACATACCATCTTCATCCGACCTACAGAAGGAATGGTGGAAATGAGTTCATCCGAATCTGGCTGCCATGACACCACCTCAATggttgtggtggctCCAGagcgggaacactgggtgcaggGTAAGGACACAGCCTAGACGAGATGCCAGTCTATCGCAGAGCATGCTGAAAAGGCCACGAAACCCTAAAATGAAAACACTCTGGGCTGTCTGAAGAGCTGAGTCACTGTGTGTCTTCAGACGAAGACTGAAGACGTTCCTCTTCACTAAACACTTAAACAAGCACTAAATCTACACtgcttgtttaaataaaaaacacttgtACTGTTTTCTTTGCTGCTATGTAAAAGAGTTTTAGCCTTATGGTATTCTTGAATActgacctatttgtactagTGTGAGGACATCGTTTTCAACAGGGACTACAAAACACTTCTGgaagtctctctggataagggtgttgTAGATGTTGCTGCTTACATCTGGGTGACTTTTGACCCACAAAAACCTCGTCATAGGCTTGACTGGCGCTTATGTGCCTAAACCCAAATATATTGATATGtataattttcttctttttctgattgAAGTGGCCACATGAAGTCTCTGAGCTCAGAACAGTATTTCTGACTGTATATGAATATAGTATGAAGCTTTCACACACATGTTCTTACACAGTGGCACCATCATCTGTCCACAAAAGGAATTACAGATGGTAGGAAAGTAGGTAACCAGCCACTTTCCCAGCCTTGCCATGCAATacttattttaatctgttttccTGGTGCATCGTATCCGAATTAACTCATCATTACTAACCTCTTCATGAATGTTAGAGCAGGtcacattaaaaatgtacaatgtgttgGGACTACAGAAATTGGAAAcacctttatttgtcacatacattatagtgaaattattttctttgccTAGCCCAGCTTGTTCAGAAGTTGGGGttagagcacagggtcagccatgatgtggtgcccagcagtggcagcttggcagagCCAGGGCTTGAACTCCTACCTTCTgctcagtaacccagagccttagcCACTGAGCCACAACTGCCCTGAGACCCCAGCAGCCAGCTGCACCAGCTGAACATAAATCTGATTGTAAGACACTTAAGGTACATCATAACTAGTCATGAGTAAGTGATCGTAATCAAAGTTATGTGATTTGGCATCACCAGCCAATCTGAAACATGATCTGACATAAAGTAAAGCAAATTCTTCATCTCTTGTAACTTAACCTGCATTTGAAAACACTGAAAGATATAACAAATATAGCTTTACATTAATAGTGAAgtatttcaaataatttgtGGCCTTGCCAGAAAAATCAATTTGATCTTTAACACTTTGTGCTAACCAAGGAAAACTTCCCATCCCTGATACAGCACAGTAGCTCTATGATCCAATACAGAATAAAACCCTACCATAAAGCATTAAACCAGCATTAAAATGAGAATGGTTCTGAGTAAAATCAGGTTAAAGTGCATCAGCATTCTagtataatttatgtatttaactaTATGCTCTTTGAGTGAGCAGTAAGTGTGTACTGTTCTGGATATTAAGCGCTGATACTGAAATGAATCAGAAAACTATTTTTCATGTAGAAATGTTGCTATTTTAAGGACCATTTAGCTTTCCAACTTCTTTGTTCTACCTTGAAAGGAGAGGATCTGCTTATTGTTCTAGCACATGGTACACACTCACcagtgcaaaaataaatctGCTGAA
>XR_004580300.1
gCGCTTTTCTTCGCGTGAAATAACAAATTGGGCCAATCAGAACGCAGTGAAGTTGGCTCTCAGAAGCTGCGAGTGAAGGAGAAAAATGCCCAGTGTGTGGACAGGTTTCTTTCACTACTCTGCCAAACTGTGAGGGTTTGAAATGAATTGCTACCCCTGACTGCCAGACTGGGTTCAGAATTTTCCAACCAAAACACTGTcaagtgAAGGCCCAGTGCTGGTCCACACATACCATCTTCATCCGACCTACAGAAGGAATGGTGGAAATGAGTTCATCCGAATCTGGCTGCCATGACACCACCTCAATggttgtggtggctCCAGagcgggaacactgggtgcaggGTAAGGACACAGCCTAGACGAGATGCCAGTCTATCGCAGAGCATGCTGAAAAGGCCACGAAACCCTAAAATGAAAACACTCTGGGCTGTCTGAAGAGCTGAGTCACTGTGTGTCTTCAGACGAAGACTGAAGACGTTCCTCTTCACTAAACACTTAAACAAGCACTAAATCTACACtgcttgtttaaataaaaaacacttgtACTGTTTTCTTTGCTGCTATGTAAAAGAGTTTTAGCCTTATGGTATTCTTGAATActgacctatttgtactagTGTGAGGACATCGTTTTCAACAGGGACTACAAAACACTTCTGgaagtctctctggataagggtgttgTAGATGTTGCTGCTTACATCTGGGTGACTTTTGACCCACAAAAACCTCGTCATAGGCTTGACTGGCGCTTATGTGCCTAAACCCAAATATATTGATATGtataattttcttctttttctgattgAAGTGGCCACATGAAGTCTCTGAGCTCAGAACAGTATTTCTGACTGTATATGAATATAGTATGAAGCTTTCACACACATGTTCTTACACAGTGGCACCATCATCTGTCCACAAAAGGAATTACAGATGGTAGGAAAGTAGGTAACCAGCCACTTTCCCAGCCTTGCCATGCAATacttattttaatctgttttccTGGTGCATCGTATCCGAATTAACTCATCATTACTAACCTCTTCATGAATGTTAGAGCAGGtcacattaaaaatgtacaatgtgttgGGACTACAGAAATTGGAAAcacctttatttgtcacatacattatagtgaaattattttctttgccTAGCCCAGCTTGTTCAGAAGTTGGGGttagagcacagggtcagccatgatgtggtgcccagcagtggcagcttggcagagCCAGGGCTTGAACTCCTACCTTCTgctcagtaacccagagccttagcCACTGAGCCACAACTGCCCTGAGACCCCAGCAGCCAGCTGCACCAGCTGAACATAAATCTGATTGTAAGACACTTAAGGTACATCATAACTAGTCATGAGTAAGTGATCGTAATCAAAGTTATGTGATTTGGCATCACCAGCCAATCTGAAACATGATCTGACATAAAGTAAAGCAAATTCTTCATCTCTTGTAACTTAACCTGCATTTGAAAACACTGAAAGATATAACAAATATAGCTTTACATTAATAGTGAAgtatttcaaataatttgtGGCCTTGCCAGAAAAATCAATTTGATCTTTAACACTTTGTGCTAACCAAGGAAAACTTCCCATCCCTGATACAGCACAGTAGCTCTATGATCCAATACAGAATAAAACCCTACCATAAAGCATTAAACCAGCATTAAAATGAGAATGGTTCTGAGTAAAATCAGGTTAAAGTGCATCAGCATTCTagtataatttatgtatttaactaTATGCTCTTTGAGTGAGCAGTAAGTGTGTACTGTTCTGGATATTAAGCGCTGATACTGAAATGAATCAGAAAACTATTTTTCATGTAGAAATGTTGCTATTTTAAGGACCATTTAGCTTTCCAACTTCTTTGTTCTACCTTGAAAGGAGAGGATCTGCTTATTGTTCTAGCACATGGTACACACTCACcagtgcaaaaataaatctGCTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403164.2 False 1861 lncRNA 0.41 3 18464884 18467320
XR_004580300.1 True 1978 lncRNA 0.41 4 18464886 18467320

Neighbor

gene id symbol gene type direction distance location
LOC113536767 LOC108272161 coding upstream 50929 18298375 ~ 18413955 (+)
LOC113532395 kyat3,ccbl2,LOC100332215 coding upstream 317967 18139055 ~ 18146917 (+)
barhl2 barhl2,LOC107749991 coding upstream 542065 17918400 ~ 17922819 (+)
znf644b LOC108271612 coding upstream 623902 17804545 ~ 17840982 (+)
tgfbr3 tgfbr3 coding upstream 697604 17666584 ~ 17767280 (+)
dzip1l LOC108271535 coding downstream 133639 18600959 ~ 18614825 (+)
LOC113527312 NA coding downstream 374117 18841437 ~ 18857162 (+)
farp2 farp2 coding downstream 391119 18858439 ~ 18917006 (+)
atg4b atg4b coding downstream 484369 18951689 ~ 18957780 (+)
kif1aa kif1a,kif1aa,LOC108427666,LOC107593169 coding downstream 520683 18988003 ~ 19049750 (+)
LOC113536874 NA non-coding upstream 104849 18358202 ~ 18360035 (+)
G29281 znf326 non-coding upstream 379240 18083719 ~ 18085644 (+)
G29106 NA non-coding upstream 700111 17694754 ~ 17764773 (+)
G29105 NA non-coding upstream 776149 17683821 ~ 17688735 (+)
G29036 NA non-coding upstream 929533 17530575 ~ 17535351 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding downstream 221333 18688653 ~ 18691007 (+)
G29640 NA non-coding downstream 582906 19050226 ~ 19050438 (+)
G29641 NA non-coding downstream 583504 19050824 ~ 19051043 (+)
G29656 NA non-coding downstream 725229 19192549 ~ 19195409 (+)
G29674 NA non-coding downstream 732995 19200315 ~ 19202099 (+)
tomm6 tomm6 other upstream 2063773 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 2282575 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 2361636 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 2674440 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 3160390 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 307450 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 350082 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 465363 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 593777 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 1067025 19534345 ~ 19537197 (+)

Expression


Co-expression Network