LOC113534804


Basic Information

Item Value
gene id LOC113534804
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10381401 ~ 10395544 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403528.2
AGTAgcgatggataaatggatgtgGACAGGAATGCCTTGTTGGTGGTGGGATGGGGAGTGAGTGAATATCCAGCGGGGGAAGGAGATGGATGTGGCAGTGGAAGACCTGCAGGGTAGAGACGAGGGTGGAGACAAAGGCATGGGGTTGGAgGTTAACCAAGCTTGGCAGGAGGCGTGTGTGCTATGCCACACTAGGAAGGCTGACCCTCGAGATTGGACTAAGCGATAAAGAGCAGAAAGCAGGCGCAAGCTGAAGGCTGTACTCAACATCCACATCAGATGAGAGCTGCTTTATCATCGAAAGGGGGCTGacttaaatcatttaattacatGCTGCTATGTTTTGCTCATGTGGTTGAGCCCTGTTTCCGATGTGCGTGACTGGCCGTTATTGACaatgacagtgacagtgtttaCTGTGACCCATCAGGGGATAAGAAGGTGGAATCAATTTAGAATATAAAACAAAGATctataaatgttatgtaaagCAGGAGGGAAGATTTGAATTGGACCTTCTATGTGAGTCACAGACACAACATAGAgctgtaactagaaatggaacAATAGAGCACATTTGTGATATTGTAATCTTACAACTTTAAACATGACCATTGTTGGCATATCACAGTGTATGCTTActatgtcactttttttttttttttttttttaaagaggatGGCACATAAGACCTTAGCAACAGCTCAAGAATTAAATTTATTCAgttaggaattttttttaaacaaacattatcACTTTTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403528.2 True 763 lncRNA 0.42 3 10381401 10395544

Neighbor

gene id symbol gene type direction distance location
tfap2c tfap2c,LOC102234024 coding upstream 13384 10354311 ~ 10368017 (+)
rtf2 rtfdc1,LOC107740265,LOC107666131,LOC107744351,LOC107681290 coding upstream 65876 10289199 ~ 10315525 (+)
nat8l2 LOC108271756 coding upstream 172967 10203574 ~ 10208434 (+)
ncoa5 ncoa5 coding upstream 336619 10034633 ~ 10044782 (+)
pltp pltp coding upstream 356035 10011535 ~ 10025366 (+)
LOC113537259 NA coding downstream 358971 10754515 ~ 10754622 (+)
necab3 necab3,LOC108271560,LOC108431835,LOC107666033,LOC107744391,LOC107681272 coding downstream 539160 10934704 ~ 10974521 (+)
snta1 snta1,LOC107681301,LOC107587638 coding downstream 632764 11028308 ~ 11058982 (+)
ralgapb ralgapb,LOC107681280 coding downstream 817801 11213345 ~ 11252653 (+)
LOC113533429 kcnq2,LOC107681271,LOC100537363 coding downstream 867586 11263130 ~ 11312925 (+)
G24670 NA non-coding upstream 60605 10320531 ~ 10320796 (+)
G24668 NA non-coding upstream 62572 10318618 ~ 10318829 (+)
G24658 eya2 non-coding upstream 134024 10246944 ~ 10247377 (+)
G24653 NA non-coding upstream 143279 10237886 ~ 10238122 (+)
G24494 NA non-coding upstream 200919 10180243 ~ 10180482 (+)
G24751 NA non-coding downstream 56705 10452249 ~ 10452762 (+)
G24759 NA non-coding downstream 93744 10489288 ~ 10490288 (+)
G24989 NA non-coding downstream 425923 10821467 ~ 10847125 (+)
G25035 NA non-coding downstream 520512 10916056 ~ 10918504 (+)
G25110 NA non-coding downstream 838578 11234122 ~ 11234603 (+)
G24500 NA other upstream 182946 10197966 ~ 10198455 (+)
manbal manbal other upstream 440214 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 458236 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 777895 9591941 ~ 9603506 (+)
hmga1b NA other upstream 926939 9450925 ~ 9454462 (+)
G25029 NA other downstream 510656 10906200 ~ 10908572 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 1808897 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 2130626 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 2333449 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 2870244 13265788 ~ 13332177 (+)

Expression


Co-expression Network